Dave Alaska
RSP 11627
Grower: Denise Marston
General Information
- Accession Date
- July 28, 2020
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-2a | c.1105C>G | p.Pro369Ala | missense variant | moderate | contig700 | 1944285 | G/C |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1124G>C | p.Arg375Thr | missense variant | moderate | contig700 | 1950514 | C/G |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b |
c.353_354ins |
p.Gly119fs | frameshift variant | high | contig700 | 2721319 | T/TGG |
|
DXR-1 | c.20G>T | p.Cys7Phe | missense variant | moderate | contig380 | 235947 | C/A |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
DXR-2 | c.1140A>C | p.Lys380Asn | missense variant | moderate | contig380 | 285582 | T/G |
|
FAD2-2 | c.58C>T | p.His20Tyr | missense variant | moderate | contig83 | 1803311 | G/A |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
HDS-1 |
c.-108+1_-10 |
splice donor variant & intron variant | high | contig1891 | 889975 | A/AC |
|
Nearest genetic relatives (All Samples)
- 0.142 Sour D (RSP11343)
- 0.156 New York City Deisel (RSP11225)
- 0.157 East Coast Sour Diesel (RSP10243)
- 0.158 RKM-2018-002 (RSP11093)
- 0.179 Trump x Trump (RSP11466)
- 0.201 Thank You Jerry (RSP11459)
- 0.202 Blueberry Cheesecake (RSP10684)
- 0.204 Domnesia (RSP11184)
- 0.205 Hermaphrodite Research Sample1 (RSP11042)
- 0.205 Hermaphrodite Research Sample1 (RSP11049)
- 0.210 Rest (RSP11377)
- 0.212 Durban Poison 1 (RSP10996)
- 0.213 Serious Happiness (RSP10763)
- 0.215 Durban Poison 1 (RSP11013)
- 0.216 Liberty Haze (RSP11000)
- 0.217 501st OG (RSP11241)
- 0.217 Sour Tsunami x Cataract Ku (RSP11183)
- 0.217 Bordello (RSP11228)
- 0.220 Super Sour Diesel (RSP11191)
- 0.220 Whitey (RSP11363)
Nearest genetic relatives (Base Tree)
- 0.169 RKM-2018-002 (RSP11093)
- 0.211 Blueberry Cheesecake (RSP10684)
- 0.213 Hermaphrodite Research Sample1 (RSP11049)
- 0.226 Pie Hoe (RSP11073)
- 0.235 RKM-2018-005 (RSP11096)
- 0.235 Liberty Haze (RSP11000)
- 0.240 RKM-2018-033 (RSP11125)
- 0.250 RKM-2018-032 (RSP11124)
- 0.257 RKM-2018-018 (RSP11110)
- 0.257 Gold Cracker (RSP11048)
- 0.260 Durban Poison (RSP11014)
- 0.262 RKM-2018-020 (RSP11112)
- 0.264 QUEEN JESUS (RSP10105)
- 0.268 Skywalker OG (RSP10837)
- 0.277 Golden Goat 2 (RSP10991)
- 0.280 UP Sunrise (RSP10989)
- 0.284 RKM-2018-003 (RSP11094)
- 0.286 The Gift (RSP10988)
- 0.287 RKM-2018-028 (RSP11120)
- 0.287 Sour Raspberry (RSP10551)
Most genetically distant strains (All Samples)
- 0.492 80E (RSP11213)
- 0.491 80E (RSP11211)
- 0.476 80E (RSP11212)
- 0.462 Tiger Tail 30 (RSP11484)
- 0.451 Tanao Sri-white 80 (RSP11621)
- 0.438 Tanao Sri 46 (RSP11486)
- 0.434 Unknown- Cherry Wine - 004 (RSP11271)
- 0.433 Squirrel Tail 81 (RSP11622)
- 0.433 JL yellow (RSP11075)
- 0.430 Cherry Blossom (RSP11306)
- 0.430 Cherry Blossom (RSP11314)
- 0.429 JL 3rd Gen Mother (RSP11214)
- 0.429 Squirrel Tail 31 (RSP11485)
- 0.427 Tiger Tail 78 (RSP11619)
- 0.426 Feral (RSP11205)
- 0.425 JL 3rd Gen Father (RSP11196)
- 0.424 Cherry Blossom (RSP11334)
- 0.424 R1 (RSP11483)
- 0.423 R2 (RSP11615)
- 0.423 Feral (RSP10892)
Most genetically distant strains (Base Tree)
- 0.443 JL yellow (RSP11075)
- 0.425 Carmagnola (RSP11037)
- 0.412 Lovrin (RSP10658)
- 0.411 Feral (RSP10890)
- 0.407 Santhica27 (RSP11047)
- 0.406 Futura 75 (RSP10664)
- 0.400 Monoica (RSP10241)
- 0.400 Carmagnola (RSP10979)
- 0.397 Kyrgyz Gold (RSP11054)
- 0.393 USO 31 (RSP10981)
- 0.388 Fedora 17 (RSP10661)
- 0.387 Jiangji (RSP10653)
- 0.386 Cbot-2019-005 (RSP11133)
- 0.382 Ivory (RSP10668)
- 0.380 Tisza (RSP11044)
- 0.374 Cherry (RSP11142)
- 0.373 Tygra (RSP10667)
- 0.370 Tisza (RSP10659)
- 0.370 KYRG-11 (RSP11051)
- 0.369 RKM-2018-022 (RSP11114)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 88
- Concordance:
- 61
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 3
- Concordance:
- 3
Blockchain Registration Information
- SHASUM Hash
-
1277f504b7a63def
3ae5d5291175a9ee 0595f81e078c1096 ca6c8f9c262b0917