Right Mark

RSP 11628

Grower: Denise Marston

General Information

Accession Date
July 28, 2020
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.06%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0457
male female RSP11628

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1944273

IGV: Start, Jump

T/C
NGS:
0.101
C90:
0.967
PKSG-2a

UniProt

c.1105C>G p.Pro369Ala missense variant moderate contig700 1944285

IGV: Start, Jump

G/C
NGS:
0.011
C90:
0.000
PKSG-2a

UniProt

c.995C>T p.Ser332Phe missense variant moderate contig700 1944395

IGV: Start, Jump

G/A
NGS:
0.015
C90:
0.598
PKSG-2a

UniProt

c.781T>A p.Leu261Ile missense variant moderate contig700 1944609

IGV: Start, Jump

A/T
NGS:
0.026
C90:
0.574
PKSG-2a

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1944616

IGV: Start, Jump

C/T
NGS:
0.123
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
DXR-2

UniProt

c.431C>G p.Ala144Gly missense variant moderate contig380 287760

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.550
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000
HDS-1

UniProt

c.-108+1_-108+2insG splice donor variant & intron variant high contig1891 889975

IGV: Start, Jump

A/AC
NGS:
0.217
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.234 Star Dawg (RSP11352)
  2. 0.240 Deadhead OG (RSP11463)
  3. 0.242 RKM-2018-012 (RSP11103)
  4. 0.245 Tahoe OG (RSP11189)
  5. 0.249 RKM-2018-026 (RSP11118)
  6. 0.250 Pure Power Plant (RSP11265)
  7. 0.250 Mother s Milk No 31 (RSP11623)
  8. 0.252 RKM-2018-004 (RSP11095)
  9. 0.253 Rugburn OG (RSP11353)
  10. 0.257 RKM-2018-005 (RSP11096)
  11. 0.260 MENDO BREATH (RSP11242)
  12. 0.260 Casco Kush (RSP11167)
  13. 0.262 RKM-2018-002 (RSP11093)
  14. 0.263 Power Plant (RSP11223)
  15. 0.263 Dominion Skunk (RSP11354)
  16. 0.264 Gorilla Cookies (RSP11231)
  17. 0.270 Noetic OG (RSP11455)
  18. 0.272 GG 4 (RSP11461)
  19. 0.272 Mothers Milk 5 (RSP11186)
  20. 0.274 Super Sour Diesel (RSP11191)

Nearest genetic relatives (Base Tree)

0 0.092 0.183 0.275 0.367
clone distance sibling distance more distant
  1. 0.257 RKM-2018-026 (RSP11118)
  2. 0.260 RKM-2018-002 (RSP11093)
  3. 0.268 Skywalker OG (RSP10837)
  4. 0.272 RKM-2018-005 (RSP11096)
  5. 0.283 RKM-2018-032 (RSP11124)
  6. 0.304 RKM-2018-034 (RSP11126)
  7. 0.308 Blueberry Cheesecake (RSP10680)
  8. 0.309 Pie Hoe (RSP11073)
  9. 0.310 Blueberry Cheesecake (RSP10684)
  10. 0.319 Hermaphrodite ResearchSample2 (RSP11050)
  11. 0.322 The Gift (RSP10988)
  12. 0.330 RKM-2018-033 (RSP11125)
  13. 0.331 Durban Poison (RSP11014)
  14. 0.339 Golden Goat 2 (RSP10991)
  15. 0.343 Kimbo Slice (RSP10997)
  16. 0.343 RKM-2018-019 (RSP11111)
  17. 0.345 RKM-2018-009 (RSP11100)
  18. 0.349 RKM-2018-020 (RSP11112)
  19. 0.352 Liberty Haze (RSP11000)
  20. 0.363 UP Sunrise (RSP10989)

Most genetically distant strains (All Samples)

0 0.133 0.267 0.400 0.533
clone distance sibling distance more distant
  1. 0.512 JL yellow (RSP11075)
  2. 0.509 Cherry Blossom (RSP11325)
  3. 0.507 Cherry Blossom (RSP11306)
  4. 0.502 Brunswick High (RSP11164)
  5. 0.496 JL 3rd Gen Mother (RSP11214)
  6. 0.488 JL 3rd Gen Mother (RSP11197)
  7. 0.486 Tanao Sri 46 (RSP11486)
  8. 0.478 JL 4th Gen 5 (RSP11199)
  9. 0.475 Cherry Blossom (RSP11323)
  10. 0.470 Unknown- Cherry Wine - 001 (RSP11268)
  11. 0.469 JL x NSPM1 4 (RSP11482)
  12. 0.469 JL 4th Gen 1 (RSP11193)
  13. 0.467 Black Beauty (RSP11035)
  14. 0.466 JL 4th Gen 2 (RSP11194)
  15. 0.465 Cherry Blossom (RSP11315)
  16. 0.464 JL 3rd Gen Father (RSP11196)
  17. 0.461 Black Beauty (RSP11175)
  18. 0.461 Cherry Blossom (RSP11322)
  19. 0.461 Ringo s Gift Katie s Cut (RSP11624)
  20. 0.460 Tanao Sri-white 80 (RSP11621)

Most genetically distant strains (Base Tree)

0 0.133 0.267 0.400 0.533
clone distance sibling distance more distant
  1. 0.526 JL yellow (RSP11075)
  2. 0.469 Black Beauty (RSP11035)
  3. 0.469 Italian Kiss (RSP11034)
  4. 0.458 RKM-2018-018 (RSP11110)
  5. 0.449 RKM-2018-028 (RSP11120)
  6. 0.440 Carmagnola (RSP11037)
  7. 0.438 Ivory (RSP10668)
  8. 0.437 Cbot-2019-001 (RSP11129)
  9. 0.432 RKM-2018-006 (RSP11097)
  10. 0.431 Santhica27 (RSP11047)
  11. 0.429 Fedora 17 (RSP10661)
  12. 0.429 Cherry (RSP11143)
  13. 0.426 Feral (RSP10890)
  14. 0.425 Futura 75 (RSP10664)
  15. 0.423 Monoica (RSP10241)
  16. 0.422 Sour Raspberry (RSP10551)
  17. 0.421 RKM-2018-003 (RSP11094)
  18. 0.417 RKM-2018-023 (RSP11115)
  19. 0.415 USO 31 (RSP10981)
  20. 0.412 Carmagnola (RSP10979)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349065
Overlapping SNPs:
86
Concordance:
52

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495246
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

SHASUM Hash
d0ccb0e54d7abf09df16833da1c68123fde5a84828af27c634fc43569ddefaf9
QR code for RSP11628

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