Advanced Strain Search

Sweet Berry

RSP 11632

Grower: Trilogene Seeds

General Information

Accession Date
August 19, 2020
Reported Plant Sex
Female
Report Type
CannSNP90

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

File Downloads

This chart represents the Log-R Ratio (LRR) over variants in the region of the THCA synthase gene. A high correlation between the LRR and samples with a known deletion in THCA synthase indicates the THCA region is deleted and a low correlation indicates it is intact.

THCAS Log-R Ratio
intact deleted RSP11632

This chart represents the Log-R Ratio (LRR) over variants in the region of the CBDA synthase gene. A high correlation between the LRR and samples with a known deletion in CBDA synthase indicates the CBDA region is deleted and a low correlation indicates it is intact.

CBDAS Log-R Ratio
intact deleted RSP11632

This chart represents the Log-R Ratio (LRR) over variants in the region of the CBCA synthase gene. A high correlation between the LRR and samples with a known deletion in CBCA synthase indicates the CBCA region is deleted and a low correlation indicates it is intact.

CBCAS Log-R Ratio
intact deleted RSP11632

This chart represents the Log-R Ratio (LRR) over variants in the Y-contigs. A high correlation between the LRR and samples which are known Females indicates these Y-contigs are deleted in this sample and a low correlation indicates that the Y-contigs are not deleted and is likely Male.

Plant Sex Log-R Ratio
male female RSP11632

Summary of Deletions

THCAS

Correlation:
0.93
Call:
deleted

CBDAS

Correlation:
0.22
Call:
intact

CBCAS

Correlation:
0.19
Call:
intact

Plant Sex

Correlation:
0.89
Call:
female

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
CBDAS c.407G>A p.Arg136His missense variant moderate contig1772 2082633

IGV: Start, Jump

G/A
NGS:
0.002
C90:
1.000

Variants (Select Genes of Interest)
EMF1-2

UniProt

c.710A>C p.His237Pro missense variant moderate contig885 810

IGV: Start, Jump

A/C
NGS:
0.090
C90:
0.474
PHL-2 c.1057A>G p.Arg353Gly missense variant moderate contig2621 340335

IGV: Start, Jump

A/G
NGS:
0.096
C90:
0.555
PHL-2 c.1096G>A p.Ala366Thr missense variant moderate contig2621 340374

IGV: Start, Jump

G/A
NGS:
0.090
C90:
0.531
PHL-2 c.1540A>G p.Thr514Ala missense variant moderate contig2621 340818

IGV: Start, Jump

A/G
NGS:
0.042
C90:
0.282
PHL-2 c.2756A>C p.Glu919Ala missense variant moderate contig2621 342799

IGV: Start, Jump

A/C
NGS:
0.064
C90:
0.675
PHL-2 c.2783G>A p.Ser928Asn missense variant moderate contig2621 342826

IGV: Start, Jump

G/A
NGS:
0.107
C90:
0.890
PHL-2 c.3002A>G p.Tyr1001Cys missense variant moderate contig2621 343045

IGV: Start, Jump

A/G
NGS:
0.055
C90:
0.316
PHL-2 c.3027G>T p.Lys1009Asn missense variant moderate contig2621 343070

IGV: Start, Jump

G/T
NGS:
0.055
C90:
0.311
PHL-2 c.3033T>G p.Cys1011Trp missense variant moderate contig2621 343076

IGV: Start, Jump

T/G
NGS:
0.055
C90:
0.292
PHL-2 c.3209A>G p.Gln1070Arg missense variant moderate contig2621 343252

IGV: Start, Jump

A/G
NGS:
0.103
C90:
0.885
PKSG-4a

UniProt

c.1000T>C p.Tyr334His missense variant moderate contig700 1938411

IGV: Start, Jump

T/C
NGS:
0.002
C90:
0.804
PKSG-2a

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1944273

IGV: Start, Jump

T/C
NGS:
0.101
C90:
0.967
PKSG-2a

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1945166

IGV: Start, Jump

T/C
NGS:
0.143
C90:
0.962
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1951408

IGV: Start, Jump

A/G
NGS:
0.134
C90:
0.646
PKSG-2b

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1951414

IGV: Start, Jump

T/C
NGS:
0.151
C90:
0.957
PKSG-2b

UniProt

c.167C>G p.Thr56Ser missense variant moderate contig700 1951471

IGV: Start, Jump

G/C
NGS:
0.103
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.316+2T>A splice donor variant & intron variant high contig700 2723818

IGV: Start, Jump

A/T
NGS:
0.070
C90:
0.689
OAC-2

UniProt

c.220A>G p.Ile74Val missense variant moderate contig931 110019

IGV: Start, Jump

T/C
NGS:
0.011
C90:
0.670
OAC-1

UniProt

c.220A>G p.Ile74Val missense variant moderate contig931 118144

IGV: Start, Jump

T/C
NGS:
0.033
C90:
0.670
ELF3

UniProt

c.358G>A p.Gly120Arg missense variant moderate contig97 242064

IGV: Start, Jump

G/A
NGS:
0.099
C90:
0.493
ELF3

UniProt

c.520A>C p.Asn174His missense variant moderate contig97 242226

IGV: Start, Jump

A/C
NGS:
0.094
C90:
0.502
ELF3

UniProt

c.812G>C p.Gly271Ala missense variant moderate contig97 242518

IGV: Start, Jump

G/C
NGS:
0.114
C90:
0.938
ELF3

UniProt

c.1230-2_1230-1delAG splice acceptor variant & intron variant high contig97 243676

IGV: Start, Jump

TAG/T
NGS:
0.088
C90:
0.450
ELF3

UniProt

c.1630A>G p.Thr544Ala missense variant moderate contig97 244461

IGV: Start, Jump

A/G
NGS:
0.103
C90:
0.545
ELF3

UniProt

c.1966C>G p.Pro656Ala missense variant moderate contig97 244797

IGV: Start, Jump

C/G
NGS:
0.123
C90:
0.632
ELF3

UniProt

c.2198delG p.Arg733fs frameshift variant high contig97 245028

IGV: Start, Jump

CG/C
NGS:
0.002
C90:
0.612
ELF3

UniProt

c.2216A>G p.His739Arg missense variant moderate contig97 245047

IGV: Start, Jump

A/G
NGS:
0.020
C90:
0.182
ELF5

UniProt

c.853C>T p.Pro285Ser missense variant moderate contig382 880715

IGV: Start, Jump

C/T
NGS:
0.007
C90:
0.153
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
PHL-1

UniProt

c.2551A>G p.Thr851Ala missense variant moderate contig1439 1487246

IGV: Start, Jump

T/C
NGS:
0.116
C90:
0.890
PHL-1

UniProt

c.1387A>G p.Thr463Ala missense variant moderate contig1439 1489811

IGV: Start, Jump

T/C
NGS:
0.107
C90:
0.904
PHL-1

UniProt

c.407G>A p.Arg136Gln missense variant moderate contig1439 1491441

IGV: Start, Jump

C/T
NGS:
0.024
C90:
0.139
PHL-1

UniProt

c.175G>A p.Gly59Arg missense variant moderate contig1439 1492818

IGV: Start, Jump

C/T
NGS:
0.024
C90:
0.144
TFL1

UniProt

c.302-1G>A splice acceptor variant & intron variant high contig1636 520616

IGV: Start, Jump

C/T
NGS:
0.103
C90:
0.794
HDS-1

UniProt

c.1618A>G p.Ile540Val missense variant moderate contig1891 885936

IGV: Start, Jump

T/C
NGS:
0.099
C90:
0.861
HDS-1

UniProt

c.136G>A p.Val46Ile missense variant moderate contig1891 889256

IGV: Start, Jump

C/T
NGS:
0.088
C90:
0.593
HDS-1

UniProt

c.56C>G p.Ala19Gly missense variant moderate contig1891 889336

IGV: Start, Jump

G/C
NGS:
0.125
C90:
0.943
HDS-1

UniProt

c.35G>A p.Cys12Tyr missense variant moderate contig1891 889357

IGV: Start, Jump

C/T
NGS:
0.094
C90:
0.646
PIE1-2

UniProt

c.6653A>G p.Asn2218Ser missense variant moderate contig1460 1184434

IGV: Start, Jump

T/C
NGS:
0.059
C90:
0.928
PIE1-2

UniProt

c.6636T>G p.Asp2212Glu missense variant moderate contig1460 1184451

IGV: Start, Jump

A/C
NGS:
0.035
C90:
0.885
PIE1-2

UniProt

c.5932A>G p.Ile1978Val missense variant moderate contig1460 1185552

IGV: Start, Jump

T/C
NGS:
0.061
C90:
0.268
PIE1-2

UniProt

c.5132T>C p.Ile1711Thr missense variant moderate contig1460 1186607

IGV: Start, Jump

A/G
NGS:
0.000
C90:
0.852
PIE1-2

UniProt

c.2083_2085delGTC p.Val695del conservative inframe deletion moderate contig1460 1189954

IGV: Start, Jump

GGAC/G
NGS:
0.046
C90:
0.880
PIE1-2

UniProt

c.2072A>G p.His691Arg missense variant moderate contig1460 1189968

IGV: Start, Jump

T/C
NGS:
0.046
C90:
0.789
PIE1-2

UniProt

c.1872T>A p.Asp624Glu missense variant moderate contig1460 1190252

IGV: Start, Jump

A/T
NGS:
0.086
C90:
0.990
PIE1-2

UniProt

c.1656T>G p.Asn552Lys missense variant moderate contig1460 1191574

IGV: Start, Jump

A/C
NGS:
0.009
C90:
0.043
PIE1-2

UniProt

c.1630G>C p.Ala544Pro missense variant moderate contig1460 1191600

IGV: Start, Jump

C/G
NGS:
0.070
C90:
0.933
PIE1-2

UniProt

c.1156T>G p.Trp386Gly missense variant moderate contig1460 1192242

IGV: Start, Jump

A/C
NGS:
0.009
C90:
0.976
PIE1-2

UniProt

c.1093G>A p.Gly365Ser missense variant moderate contig1460 1192305

IGV: Start, Jump

C/T
NGS:
0.002
C90:
0.986
PIE1-2

UniProt

c.982G>A p.Glu328Lys missense variant moderate contig1460 1192416

IGV: Start, Jump

C/T
NGS:
0.050
C90:
0.976
PIE1-2

UniProt

c.710C>T p.Pro237Leu missense variant moderate contig1460 1193804

IGV: Start, Jump

G/A
NGS:
0.072
C90:
0.866
PIE1-2

UniProt

c.706T>C p.Tyr236His missense variant moderate contig1460 1193808

IGV: Start, Jump

A/G
NGS:
0.059
C90:
0.737
PIE1-2

UniProt

c.637T>A p.Ser213Thr missense variant moderate contig1460 1194421

IGV: Start, Jump

A/T
NGS:
0.079
C90:
0.885
PIE1-2

UniProt

c.349C>T p.Pro117Ser missense variant & splice region variant moderate contig1460 1195017

IGV: Start, Jump

G/A
NGS:
0.000
C90:
0.962
EMF2

UniProt

c.1772A>G p.Gln591Arg missense variant moderate contig954 3059929

IGV: Start, Jump

A/G
NGS:
0.092
C90:
0.876
FT

UniProt

c.259+1_259+2insTA splice donor variant & intron variant high contig1561 3124684

IGV: Start, Jump

G/GTA
NGS:
0.015
C90:
0.077
FLD

UniProt

c.2981T>C p.Met994Thr missense variant moderate contig1450 2044012

IGV: Start, Jump

A/G
NGS:
0.064
C90:
0.478
FLD

UniProt

c.2964C>A p.Asp988Glu missense variant moderate contig1450 2044029

IGV: Start, Jump

G/T
NGS:
0.057
C90:
0.464
FLD

UniProt

c.2929T>C p.Phe977Leu missense variant moderate contig1450 2044103

IGV: Start, Jump

A/G
NGS:
0.026
C90:
0.349
FLD

UniProt

c.2686G>A p.Ala896Thr missense variant moderate contig1450 2044848

IGV: Start, Jump

C/T
NGS:
0.035
C90:
0.225
FLD

UniProt

c.2681T>C p.Ile894Thr missense variant moderate contig1450 2044853

IGV: Start, Jump

A/G
NGS:
0.020
C90:
0.144
FLD

UniProt

c.125G>A p.Ser42Asn missense variant moderate contig1450 2047909

IGV: Start, Jump

C/T
NGS:
0.037
C90:
0.388
AAE1-3

UniProt

c.3G>A p.Met1? start lost high contig976 1084072

IGV: Start, Jump

C/T
NGS:
0.046
C90:
0.416
PIE1-1

UniProt

c.742T>A p.Ser248Thr missense variant moderate contig1225 2279320

IGV: Start, Jump

T/A
NGS:
0.002
C90:
0.890
PIE1-1

UniProt

c.773A>G p.Asn258Ser missense variant & splice region variant moderate contig1225 2279897

IGV: Start, Jump

A/G
NGS:
0.033
C90:
0.895
PIE1-1

UniProt

c.811T>C p.Tyr271His missense variant moderate contig1225 2279935

IGV: Start, Jump

T/C
NGS:
0.026
C90:
0.742
PIE1-1

UniProt

c.815C>T p.Pro272Leu missense variant moderate contig1225 2279939

IGV: Start, Jump

C/T
NGS:
0.029
C90:
0.885
PIE1-1

UniProt

c.1394A>G p.Asp465Gly missense variant moderate contig1225 2281654

IGV: Start, Jump

A/G
NGS:
0.007
C90:
0.818
PIE1-1

UniProt

c.1454T>C p.Val485Ala missense variant moderate contig1225 2281714

IGV: Start, Jump

T/C
NGS:
0.000
C90:
0.900
PIE1-1

UniProt

c.1548_1549insATG p.Gln516_Glu517insMet conservative inframe insertion moderate contig1225 2281807

IGV: Start, Jump

A/AGAT
NGS:
0.002
C90:
0.904
PIE1-1

UniProt

c.1758T>G p.Asn586Lys missense variant moderate contig1225 2282186

IGV: Start, Jump

T/G
NGS:
0.007
C90:
0.043
PIE1-1

UniProt

c.2174A>G p.His725Arg missense variant moderate contig1225 2283789

IGV: Start, Jump

A/G
NGS:
0.000
C90:
0.770
PIE1-1

UniProt

c.2185_2187delGTC p.Val729del conservative inframe deletion moderate contig1225 2283796

IGV: Start, Jump

AGTC/A
NGS:
0.000
C90:
0.876
PIE1-1

UniProt

c.3869A>C p.Asn1290Thr missense variant moderate contig1225 2285484

IGV: Start, Jump

A/C
NGS:
0.002
C90:
0.909
PIE1-1

UniProt

c.5234T>C p.Ile1745Thr missense variant moderate contig1225 2287152

IGV: Start, Jump

T/C
NGS:
0.000
C90:
0.842
PIE1-1

UniProt

c.6041T>C p.Met2014Thr missense variant moderate contig1225 2288214

IGV: Start, Jump

T/C
NGS:
0.000
C90:
0.876
PIE1-1

UniProt

c.6738G>T p.Glu2246Asp missense variant moderate contig1225 2289303

IGV: Start, Jump

G/T
NGS:
0.000
C90:
0.397

Nearest genetic relatives (All Samples)

0 0.042 0.083 0.125 0.167
closely related moderately related distantly related
  1. 0.135 Electra (RSP11366)
  2. 0.139 AVIDEKEL USA (RSP11169)
  3. 0.141 Unknown- Cherry Wine - 005 (RSP11272)
  4. 0.141 Herijuana (RSP11181)
  5. 0.142 Sangria (RSP11631)
  6. 0.142 Wedding Cake x MAC (RSP11464)
  7. 0.142 JL Cross 78 (RSP11579)
  8. 0.146 WO DC (RSP11413)
  9. 0.146 Unknown- Cherry Wine - 004 (RSP11271)
  10. 0.146 Thank You Jerry (RSP11459)
  11. 0.147 Joy (RSP11380)
  12. 0.147 Unknown- Cherry Wine - 003 (RSP11270)
  13. 0.148 Lift (RSP11378)
  14. 0.148 Cherry Sunrise (RSP11633)
  15. 0.151 JL Cross 25 (RSP11526)
  16. 0.151 Cold Weather Cherry (RSP11414)
  17. 0.151 Unknown- Cherry Wine - 002 (RSP11269)
  18. 0.151 Aquawoman (RSP11634)
  19. 0.152 JL Cross 80 (RSP11581)
  20. 0.152 RAPHAEL 2 (RSP11172)

Most genetically distant strains (All Samples)

0 0.067 0.133 0.200 0.267
closely related moderately related distantly related
  1. 0.237 Feral (RSP11205)
  2. 0.236 80E (RSP11212)
  3. 0.234 CS (RSP11208)
  4. 0.231 Tiborszallasie (RSP11210)
  5. 0.229 80E (RSP11213)
  6. 0.229 80E (RSP11211)
  7. 0.226 Fedora 17 (RSP11203)
  8. 0.224 Carmagnola USO 31 (RSP11204)
  9. 0.223 Feral (RSP11206)
  10. 0.222 Carmaleonte (RSP11207)
  11. 0.212 Eletta Campana (RSP11209)
  12. 0.210 Arcata Trainwreck (RSP11176)
  13. 0.202 JL 3rd Gen Father (RSP11196)
  14. 0.201 JL 4th Gen 6 (RSP11200)
  15. 0.198 Goomendaze (RSP11462)
  16. 0.196 unknown (RSP11432)
  17. 0.194 JL 4th Gen 2 (RSP11194)
  18. 0.193 TI-7 (RSP11601)
  19. 0.192 Chem 91 (RSP11185)
  20. 0.191 Red Eye OG (RSP11190)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346517
Overlapping SNPs:
81
Concordance:
49

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495214
Overlapping SNPs:
10
Concordance:
10

Blockchain Registration Information

SHASUM Hash
7abc1b2f71cca195e35bd02258af54773f4ec578eadfc75edf991157ff620e4c
QR code for RSP11632

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