Jolly Rancher

RSP 11639

Grower: Happy Valley

Summary

Jolly Rancher (RSP11639/Happy Valley) is a genetic Type I plant and its genetics appear uncommon. The sample's closest relative in the database is Electra (RSP11366/TOKN CBD) and it is a potential sibling. The heterozygosity rate is 1.11% which is average (54.1 percentile).

General Information

Accession Date
September 17, 2020
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.11%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0466
male female RSP11639

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.373G>C p.Val125Leu missense variant moderate contig741 4417455

IGV: Start, Jump

C/G
NGS:
0.050
C90:
0.000

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.184 UP Wendigo (RSP11261)
  2. 0.201 Mother s Milk No 31 (RSP11623)
  3. 0.206 Peach Cresendo (RSP12483)
  4. 0.206 Electra (RSP11366)
  5. 0.207 Super Blue Dream (RSP11011)
  6. 0.208 JL Cross 10 (RSP11511)
  7. 0.210 Lemon OG Haze (RSP11977)
  8. 0.211 Serious Happiness (RSP10763)
  9. 0.213 Banana Daddy 1 -Big- (RSP11496)
  10. 0.215 Pai 60w (RSP11743)
  11. 0.217 Lift (RSP11378)
  12. 0.218 QLE1 (RSP11451)
  13. 0.218 Lime OG (RSP12101)
  14. 0.219 Super Lemon Haze (RSP11641)
  15. 0.220 Whitey (RSP11363)
  16. 0.221 UnObtanium (RSP11611)
  17. 0.222 Blue Dream (RSP11006)
  18. 0.223 CPH (RSP11367)
  19. 0.224 Joy (RSP11380)
  20. 0.225 GG#4 (RSP11461)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.229 UP Sunrise (RSP10989)
  2. 0.230 Golden Goat 2 (RSP10991)
  3. 0.244 RKM-2018-004 (RSP11096)
  4. 0.251 RKM-2018-032 (RSP11124)
  5. 0.253 Blueberry Cheesecake (RSP10684)
  6. 0.254 Blue Dream (RSP11033)
  7. 0.262 Liberty Haze (RSP11000)
  8. 0.268 Blueberry Cheesecake (RSP10680)
  9. 0.268 RKM-2018-020 (RSP11112)
  10. 0.271 Durban Poison (RSP11014)
  11. 0.276 RKM-2018-027 (RSP11119)
  12. 0.282 RKM-2018-033 (RSP11125)
  13. 0.282 RKM-2018-029 (RSP11121)
  14. 0.284 Gold Cracker (RSP11048)
  15. 0.285 RKM-2018-023 (RSP11115)
  16. 0.291 RKM-2018-009 (RSP11100)
  17. 0.295 Pie Hoe (RSP11073)
  18. 0.296 Cbot-2019-006 (RSP11134)
  19. 0.299 Italian Kiss (RSP11034)
  20. 0.300 Hermaphrodite ResearchSample2 (RSP11050)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.434 Northern Lights (RSP11501)
  2. 0.433 80E (RSP11213)
  3. 0.428 Unknown--Cherry Wine---001- (RSP11268)
  4. 0.427 Cherry Blossom (RSP11323)
  5. 0.427 Cherry Blossom (RSP11311)
  6. 0.422 Tanao Sri -46- (RSP11486)
  7. 0.422 Tiger Tail -30- (RSP11484)
  8. 0.420 80E (RSP11212)
  9. 0.420 Cherry Blossom (RSP11274)
  10. 0.420 Feral (RSP11205)
  11. 0.418 Feral (RSP10890)
  12. 0.418 XBL1 (SRR14708207)
  13. 0.417 80E (RSP11211)
  14. 0.416 Unknown--Cherry Wine---003- (RSP11270)
  15. 0.415 BagSeed (RSP12627)
  16. 0.415 JL 3rd Gen Father (RSP11196)
  17. 0.414 Cherry Blossom (RSP11314)
  18. 0.413 IUP2 (SRR14708257)
  19. 0.413 CS (RSP11208)
  20. 0.412 Cherry Blossom (RSP11301)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.411 Cbot-2019-005 (RSP11133)
  2. 0.407 Feral (RSP10890)
  3. 0.406 JL yellow (RSP11075)
  4. 0.397 Carmagnola (RSP11037)
  5. 0.396 Santhica27 (RSP11047)
  6. 0.395 Monoica (RSP10241)
  7. 0.388 Fedora 17 (RSP10661)
  8. 0.386 Futura 75 (RSP10664)
  9. 0.384 Ivory (RSP10668)
  10. 0.381 Kush Hemp E1 (RSP11128)
  11. 0.378 KYRG-11 (RSP11051)
  12. 0.378 Carmagnola (RSP10979)
  13. 0.372 Tisza (RSP11044)
  14. 0.371 Cherry (RSP11142)
  15. 0.368 USO 31 (RSP10981)
  16. 0.367 RKM-2018-006 (RSP11097)
  17. 0.366 Kyrgyz Gold (RSP11054)
  18. 0.362 Black Beauty (RSP11035)
  19. 0.357 Jiangji (RSP10653)
  20. 0.357 Cbot-2019-004 (RSP11132)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448266
Overlapping SNPs:
85
Concordance:
54

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495164
Overlapping SNPs:
2
Concordance:
2

Blockchain Registration Information

Transaction ID
975da35d3858b4b7edc8369b1b39189608c95a5b714e1d7c26b388afd251270d
Stamping Certificate
Download PDF (39.4 KB)
SHASUM Hash
a8912fb3ee140cf0a6d550efcefdf884901c78c7c7ae54a46c1e51624152b98a
QR code for RSP11639

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