Cherry Gar-See-Ya

RSP 11642

Grower: Happy Valley

Summary

Cherry Gar-See-Ya (RSP11642/Happy Valley) is a genetic Type I plant and its genetics appear uncommon. The sample's closest relative in the database is Electra (RSP11366/TOKN CBD) and it is a potential sibling. The heterozygosity rate is 1.22% which is higher than average (72.1 percentile).

General Information

Accession Date
September 17, 2020
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.22%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0477
male female RSP11642

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.187A>C p.Ile63Leu missense variant moderate contig741 4417641

IGV: Start, Jump

T/G
NGS:
0.059
C90:
0.679

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1944442

IGV: Start, Jump

A/C
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1944445

IGV: Start, Jump

A/C
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1944446

IGV: Start, Jump

C/T
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1944456

IGV: Start, Jump

G/C
NGS:
0.070
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.995C>T p.Ser332Phe missense variant moderate contig700 1950643

IGV: Start, Jump

G/A
NGS:
0.042
C90:
0.000
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.544G>T p.Gly182Trp missense variant moderate contig700 2721129

IGV: Start, Jump

C/A
NGS:
0.055
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.353_354insCC p.Gly119fs frameshift variant high contig700 2721319

IGV: Start, Jump

T/TGG
NGS:
0.175
C90:
0.000
PKSG-4b

UniProt

c.338G>A p.Gly113Glu missense variant moderate contig700 2721335

IGV: Start, Jump

C/T
NGS:
0.046
C90:
0.000
DXR-2

UniProt

c.431C>G p.Ala144Gly missense variant moderate contig380 287760

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.550
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.191 Domnesia (RSP11184)
  2. 0.194 Electra (RSP11366)
  3. 0.196 Serious Happiness (RSP10763)
  4. 0.203 Doug s Varin (RSP11243)
  5. 0.205 GMO x Poison Momosa (RSP12626)
  6. 0.208 Banana Daddy 2 (RSP11495)
  7. 0.209 Lift (RSP11378)
  8. 0.212 Rest (RSP11377)
  9. 0.213 Mandarin Cookies (RSP12102)
  10. 0.214 GMO x The inhaler (RSP12508)
  11. 0.217 Blueberry Cheesecake (RSP10684)
  12. 0.220 Ringo s Angel (RSP10085)
  13. 0.221 Durban Poison #1 (RSP11013)
  14. 0.222 GMO x Poison Momosa (RSP12500)
  15. 0.225 Trump x Trump (RSP11466)
  16. 0.226 JL X NSPM1 14 (RSP11473)
  17. 0.226 Thank You Jerry (RSP11459)
  18. 0.228 Miss X (RSP10999)
  19. 0.229 Suver Haze (RSP11364)
  20. 0.229 JL Cross 6 (RSP11507)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.239 Blueberry Cheesecake (RSP10684)
  2. 0.241 Hermaphrodite ResearchSample2 (RSP11050)
  3. 0.241 Liberty Haze (RSP11000)
  4. 0.252 RKM-2018-033 (RSP11125)
  5. 0.264 Recon (RSP10755)
  6. 0.267 RKM-2018-022 (RSP11114)
  7. 0.267 Durban Poison (RSP11014)
  8. 0.268 RKM-2018-004 (RSP11096)
  9. 0.269 RKM-2018-019 (RSP11111)
  10. 0.271 Cbot-2019-006 (RSP11134)
  11. 0.272 RKM-2018-032 (RSP11124)
  12. 0.273 RKM-2018-009 (RSP11100)
  13. 0.275 RKM-2018-020 (RSP11112)
  14. 0.276 Sour Raspberry (RSP10551)
  15. 0.277 The Gift (RSP10988)
  16. 0.277 RKM-2018-029 (RSP11121)
  17. 0.278 RKM-2018-034 (RSP11126)
  18. 0.279 Pie Hoe (RSP11073)
  19. 0.281 Skywalker OG (RSP10837)
  20. 0.281 UP Sunrise (RSP10989)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.435 JL yellow (RSP11075)
  2. 0.423 Cherry Blossom (RSP11323)
  3. 0.423 Cherry Blossom (RSP11318)
  4. 0.420 JL 3rd Gen Mother (RSP11214)
  5. 0.417 Tanao Sri -46- (RSP11486)
  6. 0.409 JL 4th Gen 5 (RSP11199)
  7. 0.404 JL 4th Gen 2 (RSP11194)
  8. 0.403 Cherry Blossom (RSP11328)
  9. 0.400 JL 3rd Gen Mother (RSP11197)
  10. 0.397 Cherry Blossom (RSP11301)
  11. 0.397 Unknown--Cherry Wine---001- (RSP11268)
  12. 0.387 Cherry Blossom (RSP11306)
  13. 0.385 Cherry Blossom (RSP11309)
  14. 0.384 80E (RSP11213)
  15. 0.382 Cherry Blossom (RSP11325)
  16. 0.381 Chematonic -Cannatonic x Chemdawg- (RSP11394)
  17. 0.380 Cherry Blossom (RSP11300)
  18. 0.380 JL x NSPM1 4 (RSP11482)
  19. 0.379 Cherry Blossom (RSP11298)
  20. 0.379 JL 4th Gen 1 (RSP11193)

Most genetically distant strains (Base Tree)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.442 JL yellow (RSP11075)
  2. 0.370 RKM-2018-006 (RSP11097)
  3. 0.362 Feral (RSP10890)
  4. 0.351 Carmagnola (RSP11037)
  5. 0.350 Cbot-2019-005 (RSP11133)
  6. 0.344 Monoica (RSP10241)
  7. 0.343 Lovrin (RSP10658)
  8. 0.343 Cherry (RSP11142)
  9. 0.342 Italian Kiss (RSP11034)
  10. 0.342 Ivory (RSP10668)
  11. 0.340 USO 31 (RSP10981)
  12. 0.340 Futura 75 (RSP10664)
  13. 0.339 Carmagnola (RSP10979)
  14. 0.338 RKM-2018-027 (RSP11119)
  15. 0.338 Cbot-2019-001 (RSP11129)
  16. 0.337 Cbot-2019-004 (RSP11132)
  17. 0.336 Fedora 17 (RSP10661)
  18. 0.335 Santhica27 (RSP11047)
  19. 0.331 Black Beauty (RSP11035)
  20. 0.331 Skunk#18 (RSP11038)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448620
Overlapping SNPs:
68
Concordance:
46

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495175
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

Transaction ID
9d5c0f8c99bb793e591f388a214f89642732b93d2e58b0b6411031d76f0f326e
Stamping Certificate
Download PDF (39.5 KB)
SHASUM Hash
4116822f3294f78195810bdf1f7d194b4c9aa91d15c48c7610040541d454a24b
QR code for RSP11642

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