C Temple

RSP 11643

Grower: Happy Valley

Summary

C Temple (RSP11643/Happy Valley) is a genetic Type I plant and its genetics appear rare. The sample's closest relative in the database is Thank You Jerry (RSP11459/Happy Valley) and it is a potential sibling. The heterozygosity rate is 1.13% which is average (58.2 percentile).

General Information

Accession Date
September 17, 2020
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.13%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0459
male female RSP11643

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.168 Thank You Jerry (RSP11459)
  2. 0.198 GG#4 (RSP11461)
  3. 0.210 GG4 (RSP12096)
  4. 0.211 RKM-2018-032 (RSP11124)
  5. 0.211 RKM-2018-017 (RSP11109)
  6. 0.212 RKM-2018-021 (RSP11113)
  7. 0.214 Super Sour Diesel (RSP11191)
  8. 0.219 RKM-2018-034 (RSP11126)
  9. 0.219 Rest (RSP11377)
  10. 0.220 Tahoe OG (RSP11189)
  11. 0.225 Dog Patch (RSP11725)
  12. 0.228 501st OG (RSP11241)
  13. 0.231 Domnesia (RSP11184)
  14. 0.233 Sour D (RSP11343)
  15. 0.233 SHERBERT (RSP11355)
  16. 0.234 Pure Power Plant (RSP11265)
  17. 0.234 Trump x Trump (RSP11466)
  18. 0.235 Motor Breath #15 (RSP12093)
  19. 0.235 white wedding (RSP12103)
  20. 0.236 NSPM1 (RSP11362)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.210 RKM-2018-032 (RSP11124)
  2. 0.212 RKM-2018-034 (RSP11126)
  3. 0.242 Blueberry Cheesecake (RSP10684)
  4. 0.264 The Gift (RSP10988)
  5. 0.264 RKM-2018-033 (RSP11125)
  6. 0.266 RKM-2018-026 (RSP11118)
  7. 0.267 Blueberry Cheesecake (RSP10680)
  8. 0.267 Skywalker OG (RSP10837)
  9. 0.267 RKM-2018-009 (RSP11100)
  10. 0.271 RKM-2018-002 (RSP11093)
  11. 0.281 Hermaphrodite Research Sample1 (RSP11049)
  12. 0.282 RKM-2018-004 (RSP11096)
  13. 0.285 Liberty Haze (RSP11000)
  14. 0.288 Queen Jesus (RSP10105)
  15. 0.290 RKM-2018-020 (RSP11112)
  16. 0.290 Tygra (RSP10667)
  17. 0.291 Pie Hoe (RSP11073)
  18. 0.291 Cbot-2019-004 (RSP11132)
  19. 0.301 Hermaphrodite ResearchSample2 (RSP11050)
  20. 0.301 RKM-2018-018 (RSP11110)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.468 JL 3rd Gen Father (RSP11196)
  2. 0.441 80E (RSP11213)
  3. 0.436 Cherry Blossom (RSP11334)
  4. 0.435 JL yellow (RSP11075)
  5. 0.433 Cherry Blossom (RSP11311)
  6. 0.432 Cherry Blossom (RSP11301)
  7. 0.431 JL 3rd Gen Mother (RSP11214)
  8. 0.428 JL 4th Gen 5 (RSP11199)
  9. 0.427 Cherry Blossom (RSP11328)
  10. 0.422 80E (RSP11212)
  11. 0.421 JL 4th Gen 4 (RSP11198)
  12. 0.419 JL 4th Gen 2 (RSP11194)
  13. 0.416 Tiger Tail -30- (RSP11484)
  14. 0.414 Unknown--Cherry Wine---001- (RSP11268)
  15. 0.410 Northern Skunk (RSP11456)
  16. 0.410 80E (RSP11211)
  17. 0.409 JL 3rd Gen Mother (RSP11197)
  18. 0.409 Cherry Blossom (RSP11333)
  19. 0.407 Cherry (RSP11142)
  20. 0.407 White Label 1 (RSP11336)

Most genetically distant strains (Base Tree)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.436 JL yellow (RSP11075)
  2. 0.410 Cherry (RSP11142)
  3. 0.384 RKM-2018-023 (RSP11115)
  4. 0.381 RKM-2018-022 (RSP11114)
  5. 0.379 Cbot-2019-005 (RSP11133)
  6. 0.375 RKM-2018-027 (RSP11119)
  7. 0.374 Cherry (RSP11143)
  8. 0.372 Feral (RSP10890)
  9. 0.370 Skunk#18 (RSP11038)
  10. 0.365 Monoica (RSP10241)
  11. 0.360 RKM-2018-031 (RSP11123)
  12. 0.360 USO 31 (RSP10981)
  13. 0.359 Jiangji (RSP10653)
  14. 0.358 Futura 75 (RSP10664)
  15. 0.357 RKM-2018-028 (RSP11120)
  16. 0.354 Fedora 17 (RSP10661)
  17. 0.353 Cbot-2019-001 (RSP11129)
  18. 0.353 RKM-2018-006 (RSP11097)
  19. 0.351 CST (RSP11002)
  20. 0.348 Italian Kiss (RSP11034)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349338
Overlapping SNPs:
85
Concordance:
60

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495160
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

Transaction ID
5ef2f73c71d308a7b31a727c5e2ec9217642392fcbd7140942c2f2cf60271ac7
Stamping Certificate
Download PDF (39.6 KB)
SHASUM Hash
b9b70a9cdc8853ac8f6a05513ce9440c7731c2c73f95e7448f02b15ded823343
QR code for RSP11643

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