C Temple

RSP 11643

Grower: Happy Valley

Summary

C Temple (RSP11643/Happy Valley) is a genetic Type I plant and its genetics appear rare. The sample's closest relative in the database is Thank You Jerry (RSP11459/Happy Valley) and it is a potential sibling. The heterozygosity rate is 1.13% which is average (58.2 percentile).

General Information

Accession Date
September 17, 2020
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.13%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0459
male female RSP11643

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.182 Thank You Jerry (RSP11459)
  2. 0.209 Electra (RSP11366)
  3. 0.211 RKM-2018-034 (RSP11126)
  4. 0.213 Rest (RSP11377)
  5. 0.214 Blueberry Cheesecake (RSP10684)
  6. 0.217 Domnesia (RSP11184)
  7. 0.222 GG 4 (RSP11461)
  8. 0.224 Doug s Varin (RSP11243)
  9. 0.229 RKM-2018-017 (RSP11109)
  10. 0.229 RKM-2018-032 (RSP11124)
  11. 0.231 RKM-2018-021 (RSP11113)
  12. 0.232 Tahoe OG (RSP11189)
  13. 0.234 Lift (RSP11378)
  14. 0.238 NSPM1 (RSP11362)
  15. 0.238 CBG- 40 (RSP11444)
  16. 0.239 Suver Haze (RSP11364)
  17. 0.242 Trump x Trump (RSP11466)
  18. 0.244 Super Sour Diesel (RSP11191)
  19. 0.245 Serious Happiness (RSP10763)
  20. 0.249 Pure Power Plant (RSP11265)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.211 RKM-2018-034 (RSP11126)
  2. 0.233 RKM-2018-032 (RSP11124)
  3. 0.237 Blueberry Cheesecake (RSP10684)
  4. 0.283 The Gift (RSP10988)
  5. 0.284 Hermaphrodite Research Sample1 (RSP11049)
  6. 0.287 Skywalker OG (RSP10837)
  7. 0.287 Blueberry Cheesecake (RSP10680)
  8. 0.288 RKM-2018-026 (RSP11118)
  9. 0.291 RKM-2018-033 (RSP11125)
  10. 0.295 RKM-2018-020 (RSP11112)
  11. 0.295 Liberty Haze (RSP11000)
  12. 0.295 RKM-2018-009 (RSP11100)
  13. 0.298 Durban Poison (RSP11014)
  14. 0.299 Cbot-2019-004 (RSP11132)
  15. 0.299 RKM-2018-002 (RSP11093)
  16. 0.301 RKM-2018-018 (RSP11110)
  17. 0.303 Blueberry Cheesecake (RSP10672)
  18. 0.304 QUEEN JESUS (RSP10105)
  19. 0.306 RKM-2018-005 (RSP11096)
  20. 0.306 Pie Hoe (RSP11073)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.467 JL 3rd Gen Father (RSP11196)
  2. 0.457 80E (RSP11213)
  3. 0.435 80E (RSP11211)
  4. 0.431 80E (RSP11212)
  5. 0.427 JL 4th Gen 5 (RSP11199)
  6. 0.425 JL yellow (RSP11075)
  7. 0.422 White Label 1 (RSP11336)
  8. 0.422 JL 3rd Gen Mother (RSP11214)
  9. 0.420 Tanao Sri-white 80 (RSP11621)
  10. 0.412 Squirrel Tail 81 (RSP11622)
  11. 0.411 Tanao Sri 46 (RSP11486)
  12. 0.409 Northern Skunk (RSP11456)
  13. 0.408 Cherry Blossom (RSP11334)
  14. 0.407 JL 4th Gen 2 (RSP11194)
  15. 0.404 Cherry Blossom (RSP11328)
  16. 0.404 Tiger Tail 30 (RSP11484)
  17. 0.403 RKM-2018-024 (RSP11116)
  18. 0.403 JL 4th Gen 4 (RSP11198)
  19. 0.401 Cherry Blossom (RSP11301)
  20. 0.400 Ringo s Gift Katie s Cut (RSP11624)

Most genetically distant strains (Base Tree)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.437 JL yellow (RSP11075)
  2. 0.407 RKM-2018-022 (RSP11114)
  3. 0.400 Cherry (RSP11142)
  4. 0.393 Skunk 18 (RSP11038)
  5. 0.393 Cbot-2019-005 (RSP11133)
  6. 0.384 Monoica (RSP10241)
  7. 0.383 Feral (RSP10890)
  8. 0.378 RKM-2018-028 (RSP11120)
  9. 0.377 RKM-2018-023 (RSP11115)
  10. 0.375 Cherry (RSP11143)
  11. 0.374 Lovrin (RSP10658)
  12. 0.372 Ivory (RSP10668)
  13. 0.371 RKM-2018-031 (RSP11123)
  14. 0.371 RKM-2018-027 (RSP11119)
  15. 0.371 Santhica27 (RSP11047)
  16. 0.370 Italian Kiss (RSP11034)
  17. 0.368 USO 31 (RSP10981)
  18. 0.364 Futura 75 (RSP10664)
  19. 0.364 Cbot-2019-001 (RSP11129)
  20. 0.363 Jiangji (RSP10653)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349338
Overlapping SNPs:
85
Concordance:
60

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495160
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

Transaction ID
5ef2f73c71d308a7b31a727c5e2ec9217642392fcbd7140942c2f2cf60271ac7
Stamping Certificate
Download PDF (39.6 KB)
SHASUM Hash
b9b70a9cdc8853ac8f6a05513ce9440c7731c2c73f95e7448f02b15ded823343
QR code for RSP11643

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