#11 Janis

RSP11654
StrainSEEK Cannabis Certification Report

Accession Date:

September 24, 2020

General Information

Strain: #11 Janis
RSP ID: RSP11654
Grower: Kevin McKernan
Accession Date: September 24, 2020
Gender: -
Strain Seek Version: CannSNP90


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

Download VCF file: Here

Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I

Bt/Bd ALLELE DETECTION ?

CBDAS LOG-R RATIO


What does this visualization mean?

THCAS LOG-R RATIO


What does this visualization mean?

CBCAS LOG-R RATIO


What does this visualization mean?

PLANT SEX LOG-R RATIO


What does this visualization mean?

SUMMARY OF DELETIONS (THCAS, CBDAS, and CBCAS) AND PLANT SEX

Gene/Plant Sex Correlation Call
THCAS 0.42 INTACT
CBDAS 0.98 DELETED
CBCAS 0.24 INTACT
Plant Sex 0.93 Female


VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCASc.749C>Ap.Ala250Aspmissense variantMODERATEcontig7414417079

IGV:Start|Jump

G/T

NGS:0.127

C90:0.632

0.127
THCASc.424G>Ap.Val142Ilemissense variantMODERATEcontig7414417404

IGV:Start|Jump

C/T

NGS:0.000

C90:0.761

THCASc.385G>Ap.Val129Ilemissense variantMODERATEcontig7414417443

IGV:Start|Jump

C/T

NGS:0.000

C90:0.947

THCASc.355A>Tp.Met119Leumissense variantMODERATEcontig7414417473

IGV:Start|Jump

T/A

NGS:0.000

C90:0.962

THCASc.187A>Cp.Ile63Leumissense variantMODERATEcontig7414417641

IGV:Start|Jump

T/G

NGS:0.059

C90:0.679

0.059



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSA-3b

UNIPROT

c.298G>Ap.Ala100Thrmissense variantMODERATEcontig7052271640

IGV:Start|Jump

C/T

NGS:0.044

C90:0.177

0.044
EMF1-2

UNIPROT

c.634G>Cp.Val212Leumissense variantMODERATEcontig885734

IGV:Start|Jump

G/C

NGS:0.015

C90:0.239

0.015
EMF1-2

UNIPROT

c.710A>Cp.His237Promissense variantMODERATEcontig885810

IGV:Start|Jump

A/C

NGS:0.090

C90:0.474

0.09
EMF1-2

UNIPROT

c.1384A>Cp.Lys462Glnmissense variantMODERATEcontig8852270

IGV:Start|Jump

A/C

NGS:0.013

C90:0.254

0.013
PHL-2

UNIPROT

c.44G>Ap.Arg15Lysmissense variantMODERATEcontig2621337613

IGV:Start|Jump

G/A

NGS:0.015

C90:0.167

0.015
PHL-2

UNIPROT

c.932T>Cp.Leu311Promissense variantMODERATEcontig2621340210

IGV:Start|Jump

T/C

NGS:0.039

C90:0.268

0.039
PHL-2

UNIPROT

c.1057A>Gp.Arg353Glymissense variantMODERATEcontig2621340335

IGV:Start|Jump

A/G

NGS:0.096

C90:0.555

0.096
PHL-2

UNIPROT

c.1096G>Ap.Ala366Thrmissense variantMODERATEcontig2621340374

IGV:Start|Jump

G/A

NGS:0.090

C90:0.531

0.09
PHL-2

UNIPROT

c.2564T>Ap.Phe855Tyrmissense variantMODERATEcontig2621342607

IGV:Start|Jump

T/A

NGS:0.064

C90:0.732

0.064
PHL-2

UNIPROT

c.2578T>Ap.Leu860Ilemissense variantMODERATEcontig2621342621

IGV:Start|Jump

T/A

NGS:0.068

C90:0.746

0.068
PHL-2

UNIPROT

c.2624C>Tp.Ser875Phemissense variantMODERATEcontig2621342667

IGV:Start|Jump

C/T

NGS:0.042

C90:0.268

0.042
PHL-2

UNIPROT

c.2783G>Ap.Ser928Asnmissense variantMODERATEcontig2621342826

IGV:Start|Jump

G/A

NGS:0.107

C90:0.890

0.107
PHL-2

UNIPROT

c.2933G>Tp.Arg978Leumissense variantMODERATEcontig2621342976

IGV:Start|Jump

G/T

NGS:0.048

C90:0.297

0.048
PHL-2

UNIPROT

c.3209A>Gp.Gln1070Argmissense variantMODERATEcontig2621343252

IGV:Start|Jump

A/G

NGS:0.103

C90:0.885

0.103
PHL-2

UNIPROT

c.3467A>Gp.Gln1156Argmissense variantMODERATEcontig2621343510

IGV:Start|Jump

A/G

NGS:0.064

C90:0.713

0.064
PKSG-4a

UNIPROT

c.1000T>Cp.Tyr334Hismissense variantMODERATEcontig7001938411

IGV:Start|Jump

T/C

NGS:0.002

C90:0.804

0.002
PKSG-2a

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001944273

IGV:Start|Jump

T/C

NGS:0.101

C90:0.967

0.101
PKSG-2a

UNIPROT

c.995C>Tp.Ser332Phemissense variantMODERATEcontig7001944395

IGV:Start|Jump

G/A

NGS:0.015

C90:0.598

0.015
PKSG-2a

UNIPROT

c.224A>Gp.Lys75Argmissense variantMODERATEcontig7001945166

IGV:Start|Jump

T/C

NGS:0.143

C90:0.962

0.143
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-4b

UNIPROT

c.523C>Tp.His175Tyrmissense variantMODERATEcontig7002721150

IGV:Start|Jump

G/A

NGS:0.112

C90:0.325

0.112
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.316+2T>Asplice donor variant&intron variantHIGHcontig7002723818

IGV:Start|Jump

A/T

NGS:0.070

C90:0.689

0.07
DXR-2

UNIPROT

c.431C>Gp.Ala144Glymissense variantMODERATEcontig380287760

IGV:Start|Jump

G/C

NGS:0.182

C90:0.550

0.182
OAC-2

UNIPROT

c.220A>Gp.Ile74Valmissense variantMODERATEcontig931110019

IGV:Start|Jump

T/C

NGS:0.011

C90:0.670

0.011
OAC-1

UNIPROT

c.220A>Gp.Ile74Valmissense variantMODERATEcontig931118144

IGV:Start|Jump

T/C

NGS:0.033

C90:0.670

0.033
ELF3

UNIPROT

c.358G>Ap.Gly120Argmissense variantMODERATEcontig97242064

IGV:Start|Jump

G/A

NGS:0.099

C90:0.493

0.099
ELF3

UNIPROT

c.520A>Cp.Asn174Hismissense variantMODERATEcontig97242226

IGV:Start|Jump

A/C

NGS:0.094

C90:0.502

0.094
ELF3

UNIPROT

c.752G>Tp.Gly251Valmissense variantMODERATEcontig97242458

IGV:Start|Jump

G/T

NGS:0.022

C90:0.139

0.022
ELF3

UNIPROT

c.812G>Cp.Gly271Alamissense variantMODERATEcontig97242518

IGV:Start|Jump

G/C

NGS:0.114

C90:0.938

0.114
ELF3

UNIPROT

c.1230-2_1230-1delAGsplice acceptor variant&intron variantHIGHcontig97243676

IGV:Start|Jump

TAG/T

NGS:0.088

C90:0.450

0.088
ELF3

UNIPROT

c.1630A>Gp.Thr544Alamissense variantMODERATEcontig97244461

IGV:Start|Jump

A/G

NGS:0.103

C90:0.545

0.103
ELF3

UNIPROT

c.1966C>Gp.Pro656Alamissense variantMODERATEcontig97244797

IGV:Start|Jump

C/G

NGS:0.123

C90:0.632

0.123
ELF3

UNIPROT

c.2141C>Gp.Pro714Argmissense variantMODERATEcontig97244972

IGV:Start|Jump

C/G

NGS:0.088

C90:0.335

0.088
ELF3

UNIPROT

c.2198delGp.Arg733fsframeshift variantHIGHcontig97245028

IGV:Start|Jump

CG/C

NGS:0.002

C90:0.612

0.002
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
PHL-1

UNIPROT

c.2551A>Gp.Thr851Alamissense variantMODERATEcontig14391487246

IGV:Start|Jump

T/C

NGS:0.116

C90:0.890

0.116
PHL-1

UNIPROT

c.1387A>Gp.Thr463Alamissense variantMODERATEcontig14391489811

IGV:Start|Jump

T/C

NGS:0.107

C90:0.904

0.107
TFL1

UNIPROT

c.302-1G>Asplice acceptor variant&intron variantHIGHcontig1636520616

IGV:Start|Jump

C/T

NGS:0.103

C90:0.794

0.103
TFL1

UNIPROT

c.47_48dupATp.Val17fsframeshift variantHIGHcontig1636521258

IGV:Start|Jump

C/CAT

NGS:0.026

C90:0.211

0.026
HDS-1

UNIPROT

c.1618A>Gp.Ile540Valmissense variantMODERATEcontig1891885936

IGV:Start|Jump

T/C

NGS:0.099

C90:0.861

0.099
HDS-1

UNIPROT

c.56C>Gp.Ala19Glymissense variantMODERATEcontig1891889336

IGV:Start|Jump

G/C

NGS:0.125

C90:0.943

0.125
HDS-1

UNIPROT

c.35G>Ap.Cys12Tyrmissense variantMODERATEcontig1891889357

IGV:Start|Jump

C/T

NGS:0.094

C90:0.646

0.094
PIE1-2

UNIPROT

c.6653A>Gp.Asn2218Sermissense variantMODERATEcontig14601184434

IGV:Start|Jump

T/C

NGS:0.059

C90:0.928

0.059
PIE1-2

UNIPROT

c.6636T>Gp.Asp2212Glumissense variantMODERATEcontig14601184451

IGV:Start|Jump

A/C

NGS:0.035

C90:0.885

0.035
PIE1-2

UNIPROT

c.5932A>Gp.Ile1978Valmissense variantMODERATEcontig14601185552

IGV:Start|Jump

T/C

NGS:0.061

C90:0.268

0.061
PIE1-2

UNIPROT

c.5132T>Cp.Ile1711Thrmissense variantMODERATEcontig14601186607

IGV:Start|Jump

A/G

NGS:0.000

C90:0.852

PIE1-2

UNIPROT

c.2083_2085delGTCp.Val695delconservative inframe deletionMODERATEcontig14601189954

IGV:Start|Jump

GGAC/G

NGS:0.046

C90:0.880

0.046
PIE1-2

UNIPROT

c.2072A>Gp.His691Argmissense variantMODERATEcontig14601189968

IGV:Start|Jump

T/C

NGS:0.046

C90:0.789

0.046
PIE1-2

UNIPROT

c.1916T>Cp.Val639Alamissense variantMODERATEcontig14601190124

IGV:Start|Jump

A/G

NGS:0.004

C90:0.029

0.004
PIE1-2

UNIPROT

c.1872T>Ap.Asp624Glumissense variantMODERATEcontig14601190252

IGV:Start|Jump

A/T

NGS:0.086

C90:0.990

0.086
PIE1-2

UNIPROT

c.1630G>Cp.Ala544Promissense variantMODERATEcontig14601191600

IGV:Start|Jump

C/G

NGS:0.070

C90:0.933

0.07
PIE1-2

UNIPROT

c.1156T>Gp.Trp386Glymissense variantMODERATEcontig14601192242

IGV:Start|Jump

A/C

NGS:0.009

C90:0.976

0.009
PIE1-2

UNIPROT

c.1117C>Gp.Gln373Glumissense variantMODERATEcontig14601192281

IGV:Start|Jump

G/C

NGS:0.002

C90:0.818

0.002
PIE1-2

UNIPROT

c.1093G>Ap.Gly365Sermissense variantMODERATEcontig14601192305

IGV:Start|Jump

C/T

NGS:0.002

C90:0.986

0.002
PIE1-2

UNIPROT

c.982G>Ap.Glu328Lysmissense variantMODERATEcontig14601192416

IGV:Start|Jump

C/T

NGS:0.050

C90:0.976

0.05
PIE1-2

UNIPROT

c.710C>Tp.Pro237Leumissense variantMODERATEcontig14601193804

IGV:Start|Jump

G/A

NGS:0.072

C90:0.866

0.072
PIE1-2

UNIPROT

c.706T>Cp.Tyr236Hismissense variantMODERATEcontig14601193808

IGV:Start|Jump

A/G

NGS:0.059

C90:0.737

0.059
PIE1-2

UNIPROT

c.637T>Ap.Ser213Thrmissense variantMODERATEcontig14601194421

IGV:Start|Jump

A/T

NGS:0.079

C90:0.885

0.079
PIE1-2

UNIPROT

c.349C>Tp.Pro117Sermissense variant&splice region variantMODERATEcontig14601195017

IGV:Start|Jump

G/A

NGS:0.000

C90:0.962

EMF2

UNIPROT

c.1772A>Gp.Gln591Argmissense variantMODERATEcontig9543059929

IGV:Start|Jump

A/G

NGS:0.092

C90:0.876

0.092
EMF1-1

UNIPROT

c.470C>Ap.Ser157Tyrmissense variantMODERATEcontig883269959

IGV:Start|Jump

C/A

NGS:0.013

C90:0.239

0.013
EMF1-1

UNIPROT

c.605A>Tp.His202Leumissense variantMODERATEcontig883270210

IGV:Start|Jump

A/T

NGS:0.009

C90:0.230

0.009
FLD

UNIPROT

c.2981T>Cp.Met994Thrmissense variantMODERATEcontig14502044012

IGV:Start|Jump

A/G

NGS:0.064

C90:0.478

0.064
FLD

UNIPROT

c.2976A>Cp.Gln992Hismissense variantMODERATEcontig14502044017

IGV:Start|Jump

T/G

NGS:0.000

C90:0.153

FLD

UNIPROT

c.2964C>Ap.Asp988Glumissense variantMODERATEcontig14502044029

IGV:Start|Jump

G/T

NGS:0.057

C90:0.464

0.057
FLD

UNIPROT

c.2929T>Cp.Phe977Leumissense variantMODERATEcontig14502044103

IGV:Start|Jump

A/G

NGS:0.026

C90:0.349

0.026
FLD

UNIPROT

c.125G>Ap.Ser42Asnmissense variantMODERATEcontig14502047909

IGV:Start|Jump

C/T

NGS:0.037

C90:0.388

0.037
PKSA-3a

UNIPROT

c.298G>Ap.Ala100Thrmissense variantMODERATEcontig13571144811

IGV:Start|Jump

G/A

NGS:0.000

C90:0.177

PIE1-1

UNIPROT

c.742T>Ap.Ser248Thrmissense variantMODERATEcontig12252279320

IGV:Start|Jump

T/A

NGS:0.002

C90:0.890

0.002
PIE1-1

UNIPROT

c.773A>Gp.Asn258Sermissense variant&splice region variantMODERATEcontig12252279897

IGV:Start|Jump

A/G

NGS:0.033

C90:0.895

0.033
PIE1-1

UNIPROT

c.811T>Cp.Tyr271Hismissense variantMODERATEcontig12252279935

IGV:Start|Jump

T/C

NGS:0.026

C90:0.742

0.026
PIE1-1

UNIPROT

c.815C>Tp.Pro272Leumissense variantMODERATEcontig12252279939

IGV:Start|Jump

C/T

NGS:0.029

C90:0.885

0.029
PIE1-1

UNIPROT

c.1222C>Gp.Gln408Glumissense variantMODERATEcontig12252281482

IGV:Start|Jump

C/G

NGS:0.096

C90:0.852

0.096
PIE1-1

UNIPROT

c.1394A>Gp.Asp465Glymissense variantMODERATEcontig12252281654

IGV:Start|Jump

A/G

NGS:0.007

C90:0.818

0.007
PIE1-1

UNIPROT

c.1454T>Cp.Val485Alamissense variantMODERATEcontig12252281714

IGV:Start|Jump

T/C

NGS:0.000

C90:0.900

PIE1-1

UNIPROT

c.1548_1549insATGp.Gln516_Glu517insMetconservative inframe insertionMODERATEcontig12252281807

IGV:Start|Jump

A/AGAT

NGS:0.002

C90:0.904

0.002
PIE1-1

UNIPROT

c.2018T>Cp.Val673Alamissense variantMODERATEcontig12252283633

IGV:Start|Jump

T/C

NGS:0.004

C90:0.033

0.004
PIE1-1

UNIPROT

c.2174A>Gp.His725Argmissense variantMODERATEcontig12252283789

IGV:Start|Jump

A/G

NGS:0.000

C90:0.770

PIE1-1

UNIPROT

c.2185_2187delGTCp.Val729delconservative inframe deletionMODERATEcontig12252283796

IGV:Start|Jump

AGTC/A

NGS:0.000

C90:0.876

PIE1-1

UNIPROT

c.3869A>Cp.Asn1290Thrmissense variantMODERATEcontig12252285484

IGV:Start|Jump

A/C

NGS:0.002

C90:0.909

0.002
PIE1-1

UNIPROT

c.5234T>Cp.Ile1745Thrmissense variantMODERATEcontig12252287152

IGV:Start|Jump

T/C

NGS:0.000

C90:0.842

PIE1-1

UNIPROT

c.6041T>Cp.Met2014Thrmissense variantMODERATEcontig12252288214

IGV:Start|Jump

T/C

NGS:0.000

C90:0.876

PIE1-1

UNIPROT

c.6738G>Tp.Glu2246Aspmissense variantMODERATEcontig12252289303

IGV:Start|Jump

G/T

NGS:0.000

C90:0.397


NEAREST GENETIC RELATIVES TO #11 Janis:
# Relative Genetic Distance
1 RSP11655-Unknown 0.04
2 RSP11464-Wedding Cake x MAC 4.07
3 RSP11459-Thank You Jerry 4.13
4 RSP11647-Girl Scout Cookies 4.14
5 RSP11579-JL Cross 78 4.2
6 RSP11645-Unknown 4.2
7 RSP11537-JL Cross 36 4.21
8 RSP11261-UP Wendigo 4.23
9 RSP11181-Herijuana 4.35
10 RSP11651-Girl Scout Cookies 4.35
11 RSP11184-Domnesia 4.38
12 RSP11648-Pineapple Haze 4.38
13 RSP11557-JL Cross 56 4.4
14 RSP11578-JL Cross 77 4.42
15 RSP11535-JL Cross 34 4.45
16 RSP11585-JL Cross 84 4.45
17 RSP11649-Girl Scout Cookies 4.46
18 RSP11581-JL Cross 80 4.46
19 RSP11650-Girl Scout Cookies 4.53
20 RSP11526-JL Cross 25 4.54
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR4448736 86 56

Blockchain Registration Information:

Transaction ID: 70e9a7dc707844757bc0fed1eb76a30669c7203ea834fb1c84c7b1f0ae6a09b7
Stamping Certificate: PDF
SHASUM Hash: 4057fa34105e3414e903644ea039702059152cb53804489905e8c6942030fedf