JL Compost
RSP 11657
Grower: Kevin Mckernan
General Information
- Accession Date
- October 8, 2020
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type II
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
EMF1-2 | c.634G>C | p.Val212Leu | missense variant | moderate | contig885 | 734 | G/C | |
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
EMF1-2 | c.1384A>C | p.Lys462Gln | missense variant | moderate | contig885 | 2270 | A/C | |
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.1540A>G | p.Thr514Ala | missense variant | moderate | contig2621 | 340818 | A/G | |
PHL-2 | c.3002A>G | p.Tyr1001Cys | missense variant | moderate | contig2621 | 343045 | A/G | |
PHL-2 | c.3027G>T | p.Lys1009Asn | missense variant | moderate | contig2621 | 343070 | G/T | |
PHL-2 | c.3033T>G | p.Cys1011Trp | missense variant | moderate | contig2621 | 343076 | T/G | |
PHL-2 | c.3202A>C | p.Thr1068Pro | missense variant | moderate | contig2621 | 343245 | A/C |
|
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.492G>C | p.Glu164Asp | missense variant | moderate | contig700 | 2721181 | C/G |
|
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
PKSG-4b | c.229G>A | p.Gly77Ser | missense variant | moderate | contig700 | 2724206 | C/T |
|
PKSG-4b | c.216G>C | p.Leu72Phe | missense variant | moderate | contig700 | 2724219 | C/G |
|
PKSG-4b | c.206T>C | p.Leu69Ser | missense variant | moderate | contig700 | 2724229 | A/G |
|
DXR-1 | c.139A>G | p.Arg47Gly | missense variant | moderate | contig380 | 235296 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 |
c.1230-2_123 |
splice acceptor variant & intron variant | high | contig97 | 243676 | TAG/T | ||
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.2141C>G | p.Pro714Arg | missense variant | moderate | contig97 | 244972 | C/G | |
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
ELF5 | c.853C>T | p.Pro285Ser | missense variant | moderate | contig382 | 880715 | C/T | |
AAE1-2 |
c.948_949ins |
p.Asp317fs | frameshift variant | high | contig81 | 209910 | C/CA |
|
AAE1-2 | c.952delC | p.Gln318fs | frameshift variant | high | contig81 | 209912 | AC/A |
|
AAE1-2 | c.953A>G | p.Gln318Arg | missense variant | moderate | contig81 | 209915 | A/G |
|
AAE1-2 | c.955C>T | p.Arg319Cys | missense variant | moderate | contig81 | 209917 | C/T |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
PHL-1 | c.2651C>T | p.Ala884Val | missense variant | moderate | contig1439 | 1487146 | G/A | |
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2561A>T | p.Asn854Ile | missense variant | moderate | contig1439 | 1487236 | T/A | |
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
TFL1 | c.47_48dupAT | p.Val17fs | frameshift variant | high | contig1636 | 521258 | C/CAT | |
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 | c.35G>A | p.Cys12Tyr | missense variant | moderate | contig1891 | 889357 | C/T | |
HDS-1 |
c.-108+1_-10 |
splice donor variant & intron variant | high | contig1891 | 889975 | A/AC |
|
|
PIE1-2 | c.6653A>G | p.Asn2218Ser | missense variant | moderate | contig1460 | 1184434 | T/C | |
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
EMF1-1 | c.470C>A | p.Ser157Tyr | missense variant | moderate | contig883 | 269959 | C/A | |
EMF1-1 | c.605A>T | p.His202Leu | missense variant | moderate | contig883 | 270210 | A/T | |
FT | c.13C>G | p.Leu5Val | missense variant | moderate | contig1561 | 3124437 | C/G | |
FT |
c.35_43dupAT |
p.Asn12_Asn1 |
disruptive inframe insertion | moderate | contig1561 | 3124441 | T/TTAATAATAA |
|
FT |
c.32_43dupAT |
p.Asn11_Asn1 |
disruptive inframe insertion | moderate | contig1561 | 3124441 |
T/TTAATAATAA |
|
FT | c.240C>G | p.Asn80Lys | missense variant | moderate | contig1561 | 3124664 | C/G |
|
FLD |
c.1668_1669d |
p.Tyr556fs | frameshift variant | high | contig1450 | 2046364 | CTG/C |
|
AAE1-3 | c.722G>A | p.Arg241Lys | missense variant | moderate | contig976 | 1083132 | C/T |
|
AAE1-3 | c.667G>A | p.Val223Ile | missense variant | moderate | contig976 | 1083187 | C/T |
|
AAE1-3 | c.659G>A | p.Arg220Gln | missense variant | moderate | contig976 | 1083195 | C/T |
|
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
AAE1-3 | c.475G>A | p.Gly159Arg | missense variant | moderate | contig976 | 1083550 | C/T |
|
AAE1-3 | c.416T>C | p.Leu139Pro | missense variant | moderate | contig976 | 1083609 | A/G |
|
AAE1-3 | c.382T>C | p.Tyr128His | missense variant | moderate | contig976 | 1083643 | A/G |
|
AAE1-3 | c.296C>T | p.Pro99Leu | missense variant | moderate | contig976 | 1083729 | G/A |
|
AAE1-3 | c.293A>G | p.Asp98Gly | missense variant | moderate | contig976 | 1083732 | T/C |
|
AAE1-3 | c.284A>T | p.Glu95Val | missense variant | moderate | contig976 | 1083741 | T/A |
|
AAE1-3 | c.199A>G | p.Asn67Asp | missense variant | moderate | contig976 | 1083876 | T/C |
|
AAE1-3 | c.188A>G | p.Asn63Ser | missense variant | moderate | contig976 | 1083887 | T/C |
|
AAE1-3 | c.181G>A | p.Val61Ile | missense variant | moderate | contig976 | 1083894 | C/T |
|
AAE1-3 | c.167A>G | p.Glu56Gly | missense variant | moderate | contig976 | 1083908 | T/C |
|
AAE1-3 | c.125A>G | p.Glu42Gly | missense variant | moderate | contig976 | 1083950 | T/C |
|
AAE1-3 | c.79A>G | p.Thr27Ala | missense variant | moderate | contig976 | 1083996 | T/C |
|
AAE1-3 | c.52G>A | p.Gly18Ser | missense variant | moderate | contig976 | 1084023 | C/T |
|
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
Nearest genetic relatives (All Samples)
- 0.165 BlueBerry Cheesecake x JL Male (RSP11201)
- 0.166 Domnesia (RSP11184)
- 0.183 Lift (RSP11378)
- 0.184 JL 4th Gen 7 (RSP11153)
- 0.187 Blueberry Cheesecake (RSP10671)
- 0.190 JL 3rd Gen Father (RSP11196)
- 0.190 Electra (RSP11366)
- 0.191 Serious Happiness (RSP10763)
- 0.192 JL Tent 2 (RSP11489)
- 0.195 Joy (RSP11380)
- 0.196 Blueberry Cheesecake (RSP10672)
- 0.201 JL X NSPM1 7 (RSP11469)
- 0.202 JL 2 (RSP11076)
- 0.202 Blueberry Cheesecake (RSP10670)
- 0.205 JL Tent 3 (RSP11490)
- 0.206 JL X NSPM1 14 (RSP11473)
- 0.207 Doug s Varin (RSP11243)
- 0.208 JL X NSPM1 22 (RSP11475)
- 0.212 Blue Dream (RSP11004)
- 0.215 JL Cross 18 (RSP11519)
Nearest genetic relatives (Base Tree)
- 0.217 Blueberry Cheesecake (RSP10672)
- 0.229 UP Sunrise (RSP10989)
- 0.246 CST (RSP11002)
- 0.253 Liberty Haze (RSP11000)
- 0.272 Durban Poison (RSP11014)
- 0.272 Cbot-2019-001 (RSP11129)
- 0.284 Recon (RSP10755)
- 0.286 Tygra (RSP10667)
- 0.290 JL yellow (RSP11075)
- 0.293 Blue Dream (RSP11033)
- 0.295 Gold Cracker (RSP11048)
- 0.301 Blueberry Cheesecake (RSP10684)
- 0.303 Italian Kiss (RSP11034)
- 0.310 Cherry (RSP11143)
- 0.315 Golden Goat 2 (RSP10991)
- 0.316 RKM-2018-022 (RSP11114)
- 0.316 QUEEN JESUS (RSP10105)
- 0.318 RKM-2018-027 (RSP11119)
- 0.323 Hermaphrodite Research Sample1 (RSP11049)
- 0.324 RKM-2018-029 (RSP11121)
Most genetically distant strains (All Samples)
- 0.534 Tanao Sri-white-T1 (RSP11658)
- 0.471 80E (RSP11213)
- 0.459 Tanao Sri 46 (RSP11486)
- 0.458 Tiger Tail 78 (RSP11619)
- 0.458 Tanao Sri-white 80 (RSP11621)
- 0.458 80E (RSP11211)
- 0.457 80E (RSP11212)
- 0.453 Squirrel Tail 81 (RSP11622)
- 0.451 Tiger Tail 30 (RSP11484)
- 0.438 Tanao Sri-white 79 (RSP11620)
- 0.432 Squirrel Tail 31 (RSP11485)
- 0.429 RKM-2018-026 (RSP11118)
- 0.428 Feral (RSP11205)
- 0.422 Carmagnola (RSP11202)
- 0.419 Danny Noonan (RSP11070)
- 0.419 CS (RSP11208)
- 0.417 Eden (RSP11411)
- 0.416 R1 (RSP11483)
- 0.415 Red Eye OG (RSP11190)
- 0.415 501st OG (RSP11241)
Most genetically distant strains (Base Tree)
- 0.424 RKM-2018-002 (RSP11093)
- 0.413 Carmagnola (RSP10979)
- 0.412 RKM-2018-026 (RSP11118)
- 0.410 Monoica (RSP10241)
- 0.403 Kyrgyz Gold (RSP11054)
- 0.403 Santhica27 (RSP11047)
- 0.402 Feral (RSP10890)
- 0.401 Kush Hemp E1 (RSP11128)
- 0.400 Tisza (RSP11044)
- 0.398 Carmagnola (RSP11037)
- 0.398 Fedora 17 (RSP10661)
- 0.395 Black Beauty (RSP11035)
- 0.393 USO 31 (RSP10981)
- 0.393 Lovrin (RSP10658)
- 0.390 Futura 75 (RSP10664)
- 0.384 Jiangji (RSP10653)
- 0.376 KYRG-11 (RSP11051)
- 0.372 Cbot-2019-004 (RSP11132)
- 0.370 RKM-2018-032 (RSP11124)
- 0.370 Tisza (RSP10659)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 34
- Concordance:
- 22
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 3
- Concordance:
- 3
Blockchain Registration Information
- SHASUM Hash
-
30321b00c816b76d
15e2f5d9787cc272 4dbabac43f3e1316 8271477acd4e1e58