CS Indica
RSP 11658
General Information
- Accession Date
- November 1, 2020
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type II
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
EMF1-2 | c.1187T>C | p.Leu396Ser | missense variant | moderate | contig885 | 2073 | T/C |
|
EMF1-2 | c.2256A>T | p.Lys752Asn | missense variant | moderate | contig885 | 3142 | A/T |
|
PHL-2 | c.575T>C | p.Ile192Thr | missense variant | moderate | contig2621 | 339568 | T/C |
|
PHL-2 | c.841A>T | p.Ser281Cys | missense variant | moderate | contig2621 | 340119 | A/T |
|
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.1115T>G | p.Val372Gly | missense variant | moderate | contig2621 | 340393 | T/G |
|
PHL-2 | c.1166C>T | p.Pro389Leu | missense variant | moderate | contig2621 | 340444 | C/T | |
PHL-2 | c.1577A>G | p.His526Arg | missense variant | moderate | contig2621 | 340855 | A/G |
|
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.3373A>G | p.Thr1125Ala | missense variant | moderate | contig2621 | 343416 | A/G | |
PHL-2 |
c.3556_3557d |
p.Lys1186fs | frameshift variant | high | contig2621 | 343598 | GAA/G | |
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
PKSG-2a | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1944442 | A/C |
|
PKSG-2a | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1944445 | A/C |
|
PKSG-2a | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1944446 | C/T |
|
PKSG-2a | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1944456 | G/C |
|
PKSG-2b | c.1136G>A | p.Arg379His | missense variant | moderate | contig700 | 1950502 | C/T |
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
PKSG-4b | c.229G>A | p.Gly77Ser | missense variant | moderate | contig700 | 2724206 | C/T |
|
PKSG-4b | c.216G>C | p.Leu72Phe | missense variant | moderate | contig700 | 2724219 | C/G |
|
PKSG-4b | c.206T>C | p.Leu69Ser | missense variant | moderate | contig700 | 2724229 | A/G |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
OAC-1 | c.260C>G | p.Ser87Cys | missense variant | moderate | contig931 | 118104 | G/C |
|
OAC-1 | c.220A>G | p.Ile74Val | missense variant | moderate | contig931 | 118144 | T/C | |
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 |
c.1803_1805d |
p.His601del | disruptive inframe deletion | moderate | contig97 | 244625 | ACAT/A |
|
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
ELF3 | c.2216A>G | p.His739Arg | missense variant | moderate | contig97 | 245047 | A/G | |
aPT4 | c.439T>A | p.Ser147Thr | missense variant | moderate | contig121 | 2830634 | T/A |
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
aPT1 | c.220A>G | p.Ile74Val | missense variant | moderate | contig121 | 2835927 | A/G | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
AAE1-2 | c.133T>A | p.Phe45Ile | missense variant | moderate | contig81 | 209095 | T/A |
|
AAE1-2 | c.311A>G | p.Asn104Ser | missense variant | moderate | contig81 | 209273 | A/G |
|
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 | c.368A>C | p.His123Pro | missense variant | moderate | contig81 | 209330 | A/C |
|
AAE1-2 | c.374A>G | p.His125Arg | missense variant | moderate | contig81 | 209336 | A/G |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
AAE1-2 | c.1090A>G | p.Lys364Glu | missense variant | moderate | contig81 | 210052 | A/G |
|
AAE1-2 | c.1102C>A | p.His368Asn | missense variant | moderate | contig81 | 210064 | C/A |
|
AAE1-2 | c.1118C>G | p.Thr373Ser | missense variant | moderate | contig81 | 210080 | C/G |
|
AAE1-2 | c.1205C>T | p.Ala402Val | missense variant | moderate | contig81 | 210167 | C/T |
|
AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
|
AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
|
AAE1-2 | c.1434G>T | p.Glu478Asp | missense variant | moderate | contig81 | 210396 | G/T |
|
AAE1-2 | c.1451A>T | p.Lys484Met | missense variant | moderate | contig81 | 210413 | A/T |
|
AAE1-2 | c.1541T>C | p.Val514Ala | missense variant | moderate | contig81 | 210503 | T/C |
|
PHL-1 | c.2978A>G | p.Asn993Ser | missense variant | moderate | contig1439 | 1486819 | T/C |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
PHL-1 | c.432T>A | p.Asp144Glu | missense variant | moderate | contig1439 | 1491416 | A/T |
|
PHL-1 | c.407G>A | p.Arg136Gln | missense variant | moderate | contig1439 | 1491441 | C/T | |
PHL-1 | c.176G>A | p.Gly59Glu | missense variant | moderate | contig1439 | 1492817 | C/T |
|
PHL-1 | c.175G>A | p.Gly59Arg | missense variant | moderate | contig1439 | 1492818 | C/T | |
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 |
c.-108+1_-10 |
splice donor variant & intron variant | high | contig1891 | 889975 | A/AC |
|
|
PIE1-2 | c.6623C>T | p.Ala2208Val | missense variant | moderate | contig1460 | 1184464 | G/A | |
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
PIE1-2 | c.1696G>A | p.Val566Met | missense variant | moderate | contig1460 | 1191534 | C/T |
|
PIE1-2 | c.1683A>T | p.Leu561Phe | missense variant | moderate | contig1460 | 1191547 | T/A |
|
PIE1-2 | c.1630G>C | p.Ala544Pro | missense variant | moderate | contig1460 | 1191600 | C/G | |
PIE1-2 | c.1318A>G | p.Asn440Asp | missense variant | moderate | contig1460 | 1192080 | T/C | |
PIE1-2 | c.1294G>A | p.Asp432Asn | missense variant | moderate | contig1460 | 1192104 | C/T | |
PIE1-2 | c.1289A>G | p.Asp430Gly | missense variant | moderate | contig1460 | 1192109 | T/C |
|
PIE1-2 | c.1279G>A | p.Val427Ile | missense variant | moderate | contig1460 | 1192119 | C/T | |
PIE1-2 | c.710C>T | p.Pro237Leu | missense variant | moderate | contig1460 | 1193804 | G/A | |
PIE1-2 | c.706T>C | p.Tyr236His | missense variant | moderate | contig1460 | 1193808 | A/G | |
PIE1-2 | c.665+2T>A | splice donor variant & intron variant | high | contig1460 | 1194391 | A/T |
|
|
PIE1-2 | c.637T>A | p.Ser213Thr | missense variant | moderate | contig1460 | 1194421 | A/T | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
EMF1-1 | c.242A>G | p.Lys81Arg | missense variant | moderate | contig883 | 269731 | A/G | |
FT |
c.32_43dupAT |
p.Asn11_Asn1 |
disruptive inframe insertion | moderate | contig1561 | 3124441 |
T/TTAATAATAA |
|
FT |
c.20_43dupAT |
p.Asn7_Asn14 |
disruptive inframe insertion | moderate | contig1561 | 3124441 |
T/TTAATAATAA |
|
FT | c.240C>G | p.Asn80Lys | missense variant | moderate | contig1561 | 3124664 | C/G |
|
FLD | c.2981T>C | p.Met994Thr | missense variant | moderate | contig1450 | 2044012 | A/G | |
FLD | c.2962G>A | p.Asp988Asn | missense variant | moderate | contig1450 | 2044031 | C/T |
|
FLD | c.2840A>G | p.Asn947Ser | missense variant | moderate | contig1450 | 2044192 | T/C |
|
FLD | c.2585G>A | p.Arg862Gln | missense variant | moderate | contig1450 | 2045075 | C/T |
|
AAE1-3 | c.729G>T | p.Lys243Asn | missense variant | moderate | contig976 | 1083125 | C/A |
|
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
AAE1-3 | c.487A>T | p.Met163Leu | missense variant | moderate | contig976 | 1083538 | T/A |
|
AAE1-3 | c.467T>C | p.Met156Thr | missense variant | moderate | contig976 | 1083558 | A/G |
|
AAE1-3 | c.416T>C | p.Leu139Pro | missense variant | moderate | contig976 | 1083609 | A/G |
|
AAE1-3 | c.388G>A | p.Gly130Ser | missense variant | moderate | contig976 | 1083637 | C/T |
|
AAE1-3 | c.382T>C | p.Tyr128His | missense variant | moderate | contig976 | 1083643 | A/G |
|
AAE1-3 | c.327G>T | p.Trp109Cys | missense variant | moderate | contig976 | 1083698 | C/A |
|
AAE1-3 | c.301A>T | p.Thr101Ser | missense variant | moderate | contig976 | 1083724 | T/A |
|
AAE1-3 | c.293A>G | p.Asp98Gly | missense variant | moderate | contig976 | 1083732 | T/C |
|
AAE1-3 | c.235A>C | p.Lys79Gln | missense variant & splice region variant | moderate | contig976 | 1083840 | T/G |
|
AAE1-3 | c.218G>A | p.Arg73Gln | missense variant | moderate | contig976 | 1083857 | C/T |
|
AAE1-3 | c.167A>G | p.Glu56Gly | missense variant | moderate | contig976 | 1083908 | T/C |
|
AAE1-3 | c.158C>A | p.Thr53Asn | missense variant | moderate | contig976 | 1083917 | G/T |
|
AAE1-3 | c.147G>T | p.Gln49His | missense variant | moderate | contig976 | 1083928 | C/A |
|
AAE1-3 | c.127A>G | p.Ile43Val | missense variant | moderate | contig976 | 1083948 | T/C |
|
AAE1-3 | c.125A>G | p.Glu42Gly | missense variant | moderate | contig976 | 1083950 | T/C |
|
AAE1-3 | c.80C>T | p.Thr27Ile | missense variant | moderate | contig976 | 1083995 | G/A |
|
AAE1-3 | c.79A>G | p.Thr27Ala | missense variant | moderate | contig976 | 1083996 | T/C |
|
AAE1-3 | c.52G>A | p.Gly18Ser | missense variant | moderate | contig976 | 1084023 | C/T |
|
AAE1-3 | c.48C>A | p.Cys16* | stop gained | high | contig976 | 1084027 | G/T |
|
AAE1-3 | c.14C>T | p.Ala5Val | missense variant | moderate | contig976 | 1084061 | G/A |
|
FAD7A-1 |
c.*340_*343- |
splice donor variant & splice region variant & 3 prime UTR variant & intron variant | high | contig510 | 71467 |
CTATATATATAT |
|
|
PIE1-1 | c.418C>A | p.Leu140Met | missense variant | moderate | contig1225 | 2278688 | C/A |
|
PIE1-1 | c.1066C>T | p.Arg356Trp | missense variant | moderate | contig1225 | 2281326 | C/T | |
PIE1-1 | c.1120G>A | p.Asp374Asn | missense variant | moderate | contig1225 | 2281380 | G/A |
|
PIE1-1 | c.1222C>G | p.Gln408Glu | missense variant | moderate | contig1225 | 2281482 | C/G | |
PIE1-1 | c.1249G>T | p.Val417Leu | missense variant | moderate | contig1225 | 2281509 | G/T | |
PIE1-1 | c.1785A>T | p.Leu595Phe | missense variant | moderate | contig1225 | 2282213 | A/T | |
GGR | c.53A>G | p.Asn18Ser | missense variant | moderate | contig2282 | 549045 | A/G |
|
GGR | c.376G>C | p.Glu126Gln | missense variant | moderate | contig2282 | 549368 | G/C | |
GGR | c.382C>T | p.Leu128Phe | missense variant | moderate | contig2282 | 549374 | C/T |
|
GGR | c.456T>A | p.His152Gln | missense variant | moderate | contig2282 | 549448 | T/A |
|
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
GGR | c.727T>C | p.Tyr243His | missense variant | moderate | contig2282 | 549719 | T/C |
|
PKSB-3 | c.1946C>T | p.Pro649Leu | missense variant | moderate | contig93 | 3340053 | C/T |
|
Nearest genetic relatives (All Samples)
- 0.190 Tiger Tail 78 (RSP11619)
- 0.224 Squirrel Tail 31 (RSP11485)
- 0.230 Squirrel Tail 81 (RSP11622)
- 0.249 Tanao Sri-white 80 (RSP11621)
- 0.257 Tiger Tail 30 (RSP11484)
- 0.270 Tanao Sri-white 79 (RSP11620)
- 0.293 Tanao Sri 46 (RSP11486)
- 0.307 Rest (RSP11377)
- 0.320 Noetic OG (RSP11455)
- 0.323 Liberty Haze (RSP11000)
- 0.327 Recon (RSP10755)
- 0.327 Blueberry Cheesecake (RSP10684)
- 0.328 Lift (RSP11378)
- 0.331 Trump x Trump (RSP11466)
- 0.331 Queen Dream (RSP11291)
- 0.333 LEMONCAKE (RSP11340)
- 0.334 Doug s Varin (RSP11243)
- 0.334 Carmagnola (RSP10982)
- 0.335 80E (RSP11212)
- 0.336 Blue Dream (RSP11010)
Nearest genetic relatives (Base Tree)
- 0.347 Liberty Haze (RSP11000)
- 0.347 KYRG-11 (RSP11051)
- 0.347 Jiangji (RSP10653)
- 0.349 Blueberry Cheesecake (RSP10684)
- 0.350 Tisza (RSP11044)
- 0.355 Kyrgyz Gold (RSP11054)
- 0.363 Carmagnola (RSP11037)
- 0.364 Tygra (RSP10667)
- 0.364 Feral (RSP10890)
- 0.370 Recon (RSP10755)
- 0.371 Tisza (RSP10659)
- 0.372 RKM-2018-031 (RSP11123)
- 0.374 Kimbo Slice (RSP10997)
- 0.376 Fedora 17 (RSP10661)
- 0.378 USO 31 (RSP10981)
- 0.380 Lovrin (RSP10658)
- 0.382 Monoica (RSP10241)
- 0.386 QUEEN JESUS (RSP10105)
- 0.387 Futura 75 (RSP10664)
- 0.392 Santhica27 (RSP11047)
Most genetically distant strains (All Samples)
- 0.620 JL 4th Gen 2 (RSP11194)
- 0.588 JL 4th Gen 5 (RSP11199)
- 0.583 JL 3rd Gen Father (RSP11196)
- 0.567 JL 4th Gen 4 (RSP11198)
- 0.566 JL 4th Gen 1 (RSP11193)
- 0.553 JL 3rd Gen Mother (RSP11214)
- 0.539 JL yellow (RSP11075)
- 0.534 JL Compost (RSP11657)
- 0.511 JL 2 (RSP11076)
- 0.505 JL 3rd Gen Mother (RSP11197)
- 0.502 JL 4th Gen 3 (RSP11195)
- 0.502 JL 4th Gen 6 (RSP11200)
- 0.499 RKM-2018-023 (RSP11115)
- 0.496 Dave Pineapple (RSP11626)
- 0.492 Skunk 18 (RSP11030)
- 0.489 BlueBerry Cheesecake x JL Male (RSP11201)
- 0.485 Skunk 18 (RSP11038)
- 0.478 JL Tent 2 (RSP11489)
- 0.475 RKM-2018-007 (RSP11098)
- 0.474 Ringo s Gift Katie s Cut (RSP11624)
Most genetically distant strains (Base Tree)
- 0.548 JL yellow (RSP11075)
- 0.517 Skunk 18 (RSP11038)
- 0.487 RKM-2018-023 (RSP11115)
- 0.484 Blueberry Cheesecake (RSP10672)
- 0.474 Cbot-2019-005 (RSP11133)
- 0.472 RKM-2018-006 (RSP11097)
- 0.471 RKM-2018-027 (RSP11119)
- 0.456 Kush Hemp E1 (RSP11128)
- 0.447 Blue Dream (RSP11033)
- 0.447 Golden Goat 2 (RSP10991)
- 0.446 RKM-2018-009 (RSP11100)
- 0.444 Sour Raspberry (RSP10551)
- 0.444 RKM-2018-022 (RSP11114)
- 0.442 Cherry (RSP11143)
- 0.441 RKM-2018-033 (RSP11125)
- 0.439 Blueberry Cheesecake (RSP10680)
- 0.439 Ivory (RSP10668)
- 0.438 RKM-2018-005 (RSP11096)
- 0.438 Cherry (RSP11142)
- 0.436 RKM-2018-018 (RSP11110)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 33
- Concordance:
- 26
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 5
- Concordance:
- 5
Blockchain Registration Information
- SHASUM Hash
-
aa39c43de0bc2aa7
92148a693b91eb53 97f41c1a1bdf68fe f589b6458f175f47