Advanced Strain Search

Fatso

RSP 11741

Grower: Atlas Seed

General Information

Accession Date
January 13, 2021
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.97%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0500
male female RSP11741

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.749C>A p.Ala250Asp missense variant moderate contig741 4417079

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.632

Variants (Select Genes of Interest)
PKSG-4a

UniProt

c.37C>G p.Gln13Glu missense variant moderate contig700 1936734

IGV: Start, Jump

C/G
NGS:
0.031
C90:
0.000
PKSG-4a

UniProt

c.617A>G p.Tyr206Cys missense variant moderate contig700 1938028

IGV: Start, Jump

A/G
NGS:
0.075
C90:
0.000
PKSG-4a

UniProt

c.626_628delATA p.Asn209del disruptive inframe deletion moderate contig700 1938032

IGV: Start, Jump

CAAT/C
NGS:
0.075
C90:
0.000
PKSG-4a

UniProt

c.1191_1193delTTA p.Tyr398del disruptive inframe deletion moderate contig700 1938600

IGV: Start, Jump

AATT/A
NGS:
0.167
C90:
0.000
PKSG-2a

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1944273

IGV: Start, Jump

T/C
NGS:
0.101
C90:
0.967
PKSG-2a

UniProt

c.560C>T p.Thr187Met missense variant moderate contig700 1944830

IGV: Start, Jump

G/A
NGS:
0.004
C90:
0.000
PKSG-2a

UniProt

c.558G>A p.Met186Ile missense variant moderate contig700 1944832

IGV: Start, Jump

C/T
NGS:
0.004
C90:
0.000
PKSG-2a

UniProt

c.241G>A p.Val81Met missense variant moderate contig700 1945149

IGV: Start, Jump

C/T
NGS:
0.136
C90:
0.000
PKSG-2a

UniProt

c.240T>G p.Asp80Glu missense variant moderate contig700 1945150

IGV: Start, Jump

A/C
NGS:
0.136
C90:
0.000
PKSG-2a

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1945160

IGV: Start, Jump

A/G
NGS:
0.114
C90:
0.000
PKSG-2a

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1945166

IGV: Start, Jump

T/C
NGS:
0.143
C90:
0.962
PKSG-2a

UniProt

c.188T>G p.Ile63Ser missense variant moderate contig700 1945202

IGV: Start, Jump

A/C
NGS:
0.101
C90:
0.000
PKSG-2a

UniProt

c.188T>A p.Ile63Asn missense variant moderate contig700 1945202

IGV: Start, Jump

A/T
NGS:
0.061
C90:
0.000
PKSG-2a

UniProt

c.187A>T p.Ile63Phe missense variant moderate contig700 1945203

IGV: Start, Jump

T/A
NGS:
0.101
C90:
0.000
PKSG-2a

UniProt

c.167C>G p.Thr56Ser missense variant moderate contig700 1945223

IGV: Start, Jump

G/C
NGS:
0.075
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.995C>T p.Ser332Phe missense variant moderate contig700 1950643

IGV: Start, Jump

G/A
NGS:
0.042
C90:
0.000
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.718T>A p.Phe240Ile missense variant moderate contig700 1950920

IGV: Start, Jump

A/T
NGS:
0.114
C90:
0.000
PKSG-2b

UniProt

c.241G>A p.Val81Met missense variant moderate contig700 1951397

IGV: Start, Jump

C/T
NGS:
0.154
C90:
0.000
PKSG-2b

UniProt

c.240T>G p.Asp80Glu missense variant moderate contig700 1951398

IGV: Start, Jump

A/C
NGS:
0.156
C90:
0.000
PKSG-2b

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1951408

IGV: Start, Jump

A/G
NGS:
0.134
C90:
0.646
PKSG-2b

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1951414

IGV: Start, Jump

T/C
NGS:
0.151
C90:
0.957
PKSG-2b

UniProt

c.188T>G p.Ile63Ser missense variant moderate contig700 1951450

IGV: Start, Jump

A/C
NGS:
0.118
C90:
0.000
PKSG-2b

UniProt

c.188T>A p.Ile63Asn missense variant moderate contig700 1951450

IGV: Start, Jump

A/T
NGS:
0.011
C90:
0.000
PKSG-2b

UniProt

c.187A>T p.Ile63Phe missense variant moderate contig700 1951451

IGV: Start, Jump

T/A
NGS:
0.116
C90:
0.000
PKSG-2b

UniProt

c.167C>G p.Thr56Ser missense variant moderate contig700 1951471

IGV: Start, Jump

G/C
NGS:
0.103
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
DXR-2

UniProt

c.431C>G p.Ala144Gly missense variant moderate contig380 287760

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.550
FAD2-2

UniProt

c.172G>T p.Asp58Tyr missense variant moderate contig83 1803197

IGV: Start, Jump

C/A
NGS:
0.070
C90:
0.000
FAD2-2

UniProt

c.161T>A p.Leu54His missense variant moderate contig83 1803208

IGV: Start, Jump

A/T
NGS:
0.156
C90:
0.000
aPT4

UniProt

c.35A>C p.Gln12Pro missense variant moderate contig121 2828691

IGV: Start, Jump

A/C
NGS:
0.075
C90:
0.000
aPT4

UniProt

c.216A>T p.Lys72Asn missense variant moderate contig121 2828872

IGV: Start, Jump

A/T
NGS:
0.075
C90:
0.000
aPT4

UniProt

c.1111C>A p.Leu371Ile missense variant moderate contig121 2833296

IGV: Start, Jump

C/A
NGS:
0.044
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000
HDS-1

UniProt

c.1378G>A p.Val460Ile missense variant moderate contig1891 886370

IGV: Start, Jump

C/T
NGS:
0.167
C90:
0.000
HDS-1

UniProt

c.-108+1_-108+2insG splice donor variant & intron variant high contig1891 889975

IGV: Start, Jump

A/AC
NGS:
0.217
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.172 Star Dawg (RSP11352)
  2. 0.177 Rugburn OG (RSP11353)
  3. 0.180 Mother s Milk No 31 (RSP11623)
  4. 0.182 RKM-2018-012 (RSP11103)
  5. 0.186 501st OG (RSP11241)
  6. 0.200 Gorilla Cookies (RSP11231)
  7. 0.209 Black Triangle (RSP11638)
  8. 0.212 Mothers Milk 5 (RSP11186)
  9. 0.215 Abacus (RSP11266)
  10. 0.216 Noetic OG (RSP11455)
  11. 0.216 NSPM1 (RSP11362)
  12. 0.218 RKM-2018-002 (RSP11093)
  13. 0.218 Chem 91 (RSP11185)
  14. 0.220 Pure Power Plant (RSP11265)
  15. 0.221 NSPM x NSPM (RSP11487)
  16. 0.225 Garlic (RSP11341)
  17. 0.225 Peanut Butter Breath (RSP11640)
  18. 0.227 Skywalker OG (RSP10837)
  19. 0.234 SFVxTK (RSP11072)
  20. 0.235 Red Eye OG (RSP11190)

Nearest genetic relatives (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.225 RKM-2018-002 (RSP11093)
  2. 0.229 Skywalker OG (RSP10837)
  3. 0.253 RKM-2018-032 (RSP11124)
  4. 0.264 RKM-2018-026 (RSP11118)
  5. 0.276 RKM-2018-034 (RSP11126)
  6. 0.307 The Gift (RSP10988)
  7. 0.312 Blueberry Cheesecake (RSP10684)
  8. 0.322 RKM-2018-020 (RSP11112)
  9. 0.323 RKM-2018-005 (RSP11096)
  10. 0.326 Hermaphrodite Research Sample1 (RSP11049)
  11. 0.335 Hermaphrodite ResearchSample2 (RSP11050)
  12. 0.335 RKM-2018-009 (RSP11100)
  13. 0.338 RKM-2018-033 (RSP11125)
  14. 0.342 Pie Hoe (RSP11073)
  15. 0.345 Liberty Haze (RSP11000)
  16. 0.361 Durban Poison (RSP11014)
  17. 0.364 Recon (RSP10755)
  18. 0.377 Blueberry Cheesecake (RSP10680)
  19. 0.379 UP Sunrise (RSP10989)
  20. 0.379 Sour Raspberry (RSP10551)

Most genetically distant strains (All Samples)

0 0.133 0.267 0.400 0.533
clone distance sibling distance more distant
  1. 0.515 JL yellow (RSP11075)
  2. 0.498 JL 3rd Gen Mother (RSP11214)
  3. 0.486 Tanao Sri 46 (RSP11486)
  4. 0.484 JL 4th Gen 5 (RSP11199)
  5. 0.478 AVIDEKEL 2 0 (RSP11174)
  6. 0.475 JL 3rd Gen Mother (RSP11197)
  7. 0.474 Brunswick High (RSP11164)
  8. 0.471 Danny Noonan (RSP11070)
  9. 0.471 Cherry Blossom (RSP11323)
  10. 0.470 Skunk 18 (RSP11030)
  11. 0.470 Black Beauty (RSP11035)
  12. 0.467 Black Beauty (RSP11175)
  13. 0.465 Unknown- Cherry Wine - 001 (RSP11268)
  14. 0.465 USO 31 (RSP10983)
  15. 0.464 Ringo s Gift Katie s Cut (RSP11624)
  16. 0.464 Cherry Blossom (RSP11274)
  17. 0.463 Banana Kush (RSP11739)
  18. 0.463 Master Kush (RSP11497)
  19. 0.462 JL 4th Gen 1 (RSP11193)
  20. 0.461 Black Beauty (RSP11036)

Most genetically distant strains (Base Tree)

0 0.133 0.267 0.400 0.533
clone distance sibling distance more distant
  1. 0.520 JL yellow (RSP11075)
  2. 0.470 Black Beauty (RSP11035)
  3. 0.461 Skunk 18 (RSP11038)
  4. 0.457 Monoica (RSP10241)
  5. 0.456 Fedora 17 (RSP10661)
  6. 0.454 Cherry (RSP11143)
  7. 0.454 RKM-2018-019 (RSP11111)
  8. 0.450 Feral (RSP10890)
  9. 0.447 RKM-2018-028 (RSP11120)
  10. 0.445 Santhica27 (RSP11047)
  11. 0.443 Futura 75 (RSP10664)
  12. 0.443 Italian Kiss (RSP11034)
  13. 0.441 USO 31 (RSP10981)
  14. 0.441 Cherry (RSP11142)
  15. 0.440 Cbot-2019-004 (RSP11132)
  16. 0.439 Cbot-2019-005 (RSP11133)
  17. 0.438 Cbot-2019-001 (RSP11129)
  18. 0.434 Carmagnola (RSP11037)
  19. 0.433 Carmagnola (RSP10979)
  20. 0.432 RKM-2018-003 (RSP11094)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347212
Overlapping SNPs:
71
Concordance:
54

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495203
Overlapping SNPs:
9
Concordance:
8

Blockchain Registration Information

Transaction ID
35b18050d57e7aea6b4cd2a16cb98207a189016e807460c7a284086e11d08ed9
Stamping Certificate
Download PDF (39.4 KB)
SHASUM Hash
d92713cc18e3e83abf19f1383803ff321b036126431f568e40597b7dd0dc0fd9
QR code for RSP11741

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