Advanced Strain Search

Wedding Pie

RSP 11745

Grower: Atlas Seed

General Information

Accession Date
January 13, 2021
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.07%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0525
male female RSP11745

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)
THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000
THCAS c.749C>A p.Ala250Asp missense variant moderate contig741 4417079

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.632

Variants (Select Genes of Interest)
PKSG-4a

UniProt

c.617A>G p.Tyr206Cys missense variant moderate contig700 1938028

IGV: Start, Jump

A/G
NGS:
0.075
C90:
0.000
PKSG-4a

UniProt

c.626_628delATA p.Asn209del disruptive inframe deletion moderate contig700 1938032

IGV: Start, Jump

CAAT/C
NGS:
0.075
C90:
0.000
PKSG-4a

UniProt

c.1191_1193delTTA p.Tyr398del disruptive inframe deletion moderate contig700 1938600

IGV: Start, Jump

AATT/A
NGS:
0.167
C90:
0.000
PKSG-2a

UniProt

c.1136G>A p.Arg379His missense variant moderate contig700 1944254

IGV: Start, Jump

C/T
NGS:
0.020
C90:
0.000
PKSG-2a

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1944273

IGV: Start, Jump

T/C
NGS:
0.101
C90:
0.967
PKSG-2a

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1944442

IGV: Start, Jump

A/C
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1944445

IGV: Start, Jump

A/C
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1944446

IGV: Start, Jump

C/T
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1944456

IGV: Start, Jump

G/C
NGS:
0.070
C90:
0.000
PKSG-2a

UniProt

c.241G>A p.Val81Met missense variant moderate contig700 1945149

IGV: Start, Jump

C/T
NGS:
0.136
C90:
0.000
PKSG-2a

UniProt

c.240T>G p.Asp80Glu missense variant moderate contig700 1945150

IGV: Start, Jump

A/C
NGS:
0.136
C90:
0.000
PKSG-2a

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1945166

IGV: Start, Jump

T/C
NGS:
0.143
C90:
0.962
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.995C>T p.Ser332Phe missense variant moderate contig700 1950643

IGV: Start, Jump

G/A
NGS:
0.042
C90:
0.000
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.535_545delATTGGAGTGGG p.Ile179fs frameshift variant high contig700 2721127

IGV: Start, Jump

CCCCACTCCAAT/C
NGS:
0.105
C90:
0.000
PKSG-4b

UniProt

c.523C>T p.His175Tyr missense variant moderate contig700 2721150

IGV: Start, Jump

G/A
NGS:
0.112
C90:
0.325
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.353_354insCC p.Gly119fs frameshift variant high contig700 2721319

IGV: Start, Jump

T/TGG
NGS:
0.175
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
FAD2-2

UniProt

c.172G>T p.Asp58Tyr missense variant moderate contig83 1803197

IGV: Start, Jump

C/A
NGS:
0.070
C90:
0.000
FAD2-2

UniProt

c.161T>A p.Leu54His missense variant moderate contig83 1803208

IGV: Start, Jump

A/T
NGS:
0.156
C90:
0.000
FAD2-2

UniProt

c.64G>T p.Ala22Ser missense variant moderate contig83 1803305

IGV: Start, Jump

C/A
NGS:
0.048
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000
HDS-1

UniProt

c.-108+1_-108+2insG splice donor variant & intron variant high contig1891 889975

IGV: Start, Jump

A/AC
NGS:
0.217
C90:
0.000

Nearest genetic relatives (All Samples)

clone distance sibling distance more distant
  1. 0.132 Pie Hoe (RSP11073)
  2. 0.164 Electra (RSP11366)
  3. 0.171 Serious Happiness (RSP10763)
  4. 0.174 Doug s Varin (RSP11243)
  5. 0.186 Blueberry Cheesecake (RSP10684)
  6. 0.187 Lift (RSP11378)
  7. 0.190 Miss X (RSP10999)
  8. 0.199 RKM-2018-034 (RSP11126)
  9. 0.201 Pure Power Plant (RSP11265)
  10. 0.207 Hermaphrodite ResearchSample2 (RSP11050)
  11. 0.208 Rest (RSP11377)
  12. 0.209 Joy (RSP11380)
  13. 0.213 Sunday Driver (RSP11071)
  14. 0.216 RKM-2018-008 (RSP11099)
  15. 0.216 Domnesia (RSP11184)
  16. 0.218 Trump x Trump (RSP11466)
  17. 0.219 Flo (RSP11232)
  18. 0.222 Lifter (RSP11365)
  19. 0.225 Eran Almog (RSP10937)
  20. 0.227 Hermaphrodite ResearchSample2 (RSP11043)

Nearest genetic relatives (Base Tree)

clone distance sibling distance more distant
  1. 0.140 Pie Hoe (RSP11073)
  2. 0.178 Blueberry Cheesecake (RSP10684)
  3. 0.208 RKM-2018-034 (RSP11126)
  4. 0.214 Hermaphrodite ResearchSample2 (RSP11050)
  5. 0.234 Durban Poison (RSP11014)
  6. 0.247 Liberty Haze (RSP11000)
  7. 0.252 RKM-2018-032 (RSP11124)
  8. 0.254 The Gift (RSP10988)
  9. 0.266 Recon (RSP10755)
  10. 0.270 QUEEN JESUS (RSP10105)
  11. 0.274 Kimbo Slice (RSP10997)
  12. 0.277 UP Sunrise (RSP10989)
  13. 0.280 Gold Cracker (RSP11048)
  14. 0.283 Blueberry Cheesecake (RSP10680)
  15. 0.292 RKM-2018-018 (RSP11110)
  16. 0.293 Kush Hemp E1 (RSP11128)
  17. 0.296 RKM-2018-019 (RSP11111)
  18. 0.301 RKM-2018-023 (RSP11115)
  19. 0.302 RKM-2018-020 (RSP11112)
  20. 0.303 Cbot-2019-004 (RSP11132)

Most genetically distant strains (All Samples)

clone distance sibling distance more distant
  1. 0.434 Chematonic Cannatonic x Chemdawg (RSP11394)
  2. 0.424 Cherry Blossom (RSP11328)
  3. 0.418 80E (RSP11213)
  4. 0.415 JL 4th Gen 5 (RSP11199)
  5. 0.412 Chem 91 (RSP11185)
  6. 0.407 JL 3rd Gen Father (RSP11196)
  7. 0.406 Tanao Sri 46 (RSP11486)
  8. 0.406 80E (RSP11211)
  9. 0.397 JL yellow (RSP11075)
  10. 0.396 Feral (RSP10890)
  11. 0.391 RKM-2018-002 (RSP11093)
  12. 0.391 JL 4th Gen 2 (RSP11194)
  13. 0.386 Carmagnola (RSP11202)
  14. 0.385 RKM-2018-024 (RSP11116)
  15. 0.384 CS (RSP11208)
  16. 0.384 White Label 1 (RSP11336)
  17. 0.382 Cherry Blossom (RSP11318)
  18. 0.380 Cherry Blossom (RSP11301)
  19. 0.380 Tiger Tail 30 (RSP11484)
  20. 0.380 80E (RSP11212)

Most genetically distant strains (Base Tree)

clone distance sibling distance more distant
  1. 0.416 Feral (RSP10890)
  2. 0.405 JL yellow (RSP11075)
  3. 0.386 RKM-2018-002 (RSP11093)
  4. 0.384 Carmagnola (RSP11037)
  5. 0.382 Carmagnola (RSP10979)
  6. 0.376 Ivory (RSP10668)
  7. 0.372 Monoica (RSP10241)
  8. 0.372 Black Beauty (RSP11035)
  9. 0.368 Santhica27 (RSP11047)
  10. 0.367 Cbot-2019-001 (RSP11129)
  11. 0.367 RKM-2018-029 (RSP11121)
  12. 0.363 Fedora 17 (RSP10661)
  13. 0.361 Kyrgyz Gold (RSP11054)
  14. 0.361 USO 31 (RSP10981)
  15. 0.359 Futura 75 (RSP10664)
  16. 0.358 Lovrin (RSP10658)
  17. 0.358 Tisza (RSP11044)
  18. 0.358 Jiangji (RSP10653)
  19. 0.358 Cbot-2019-006 (RSP11134)
  20. 0.358 Cherry (RSP11143)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349249
Overlapping SNPs:
72
Concordance:
43

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495175
Overlapping SNPs:
6
Concordance:
6

Blockchain Registration Information

Transaction ID
57bb504c0333a7aa77089488e319951eca23e5758a32f85636c963376ee357cb
Stamping Certificate
Download PDF (39.4 KB)
SHASUM Hash
5a7f195439c724a109f961a75d3288b259f98e2431fe5e0d4960c1110ea76e7f
QR code for RSP11745

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