AOAC_MI_508
RSP 11750
Grower: Kevin Mckernan
General Information
- Accession Date
- January 28, 2021
- Reported Plant Sex
- not reported
- Report Type
- StrainSEEK v3 10Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
PHL-2 | c.932T>C | p.Leu311Pro | missense variant | moderate | contig2621 | 340210 | T/C | |
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.2564T>A | p.Phe855Tyr | missense variant | moderate | contig2621 | 342607 | T/A | |
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PHL-2 | c.2624C>T | p.Ser875Phe | missense variant | moderate | contig2621 | 342667 | C/T | |
PHL-2 | c.2756A>C | p.Glu919Ala | missense variant | moderate | contig2621 | 342799 | A/C | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.2830A>C | p.Asn944His | missense variant | moderate | contig2621 | 342873 | A/C |
|
PHL-2 | c.2933G>T | p.Arg978Leu | missense variant | moderate | contig2621 | 342976 | G/T | |
PHL-2 | c.2936T>G | p.Val979Gly | missense variant | moderate | contig2621 | 342979 | T/G |
|
PHL-2 | c.3202A>C | p.Thr1068Pro | missense variant | moderate | contig2621 | 343245 | A/C |
|
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PHL-2 | c.3467A>G | p.Gln1156Arg | missense variant | moderate | contig2621 | 343510 | A/G | |
PKSG-4a | c.617A>G | p.Tyr206Cys | missense variant | moderate | contig700 | 1938028 | A/G |
|
PKSG-4a |
c.626_628del |
p.Asn209del | disruptive inframe deletion | moderate | contig700 | 1938032 | CAAT/C |
|
PKSG-2a | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1944442 | A/C |
|
PKSG-2a | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1944445 | A/C |
|
PKSG-2a | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1944446 | C/T |
|
PKSG-2a | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1944456 | G/C |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b |
c.535_545del |
p.Ile179fs | frameshift variant | high | contig700 | 2721127 |
CCCCACTCCAAT |
|
PKSG-4b | c.523C>T | p.His175Tyr | missense variant | moderate | contig700 | 2721150 | G/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b |
c.353_354ins |
p.Gly119fs | frameshift variant | high | contig700 | 2721319 | T/TGG |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
DXR-2 | c.431C>G | p.Ala144Gly | missense variant | moderate | contig380 | 287760 | G/C | |
FAD2-2 | c.172G>T | p.Asp58Tyr | missense variant | moderate | contig83 | 1803197 | C/A |
|
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 | c.574A>G | p.Asn192Asp | missense variant | moderate | contig97 | 242280 | A/G | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 |
c.1230-2_123 |
splice acceptor variant & intron variant | high | contig97 | 243676 | TAG/T | ||
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 |
c.1803_1805d |
p.His601del | disruptive inframe deletion | moderate | contig97 | 244625 | ACAT/A |
|
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.2141C>G | p.Pro714Arg | missense variant | moderate | contig97 | 244972 | C/G | |
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
PHL-1 | c.2651C>T | p.Ala884Val | missense variant | moderate | contig1439 | 1487146 | G/A | |
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2561A>T | p.Asn854Ile | missense variant | moderate | contig1439 | 1487236 | T/A | |
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
TFL1 |
c.314_315del |
p.Thr105fs | frameshift variant | high | contig1636 | 520601 | CTG/C | |
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
HDS-1 | c.2141G>C | p.Gly714Ala | missense variant | moderate | contig1891 | 884225 | C/G |
|
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1381G>A | p.Asp461Asn | missense variant | moderate | contig1891 | 886367 | C/T |
|
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
PIE1-2 | c.6773T>C | p.Leu2258Ser | missense variant | moderate | contig1460 | 1184314 | A/G | |
PIE1-2 | c.6636T>G | p.Asp2212Glu | missense variant | moderate | contig1460 | 1184451 | A/C | |
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
PIE1-2 | c.1289A>G | p.Asp430Gly | missense variant | moderate | contig1460 | 1192109 | T/C |
|
PIE1-2 | c.637T>A | p.Ser213Thr | missense variant | moderate | contig1460 | 1194421 | A/T | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
FT | c.240C>G | p.Asn80Lys | missense variant | moderate | contig1561 | 3124664 | C/G |
|
FLD | c.2981T>C | p.Met994Thr | missense variant | moderate | contig1450 | 2044012 | A/G | |
FLD | c.2964C>A | p.Asp988Glu | missense variant | moderate | contig1450 | 2044029 | G/T | |
FLD | c.2929T>C | p.Phe977Leu | missense variant | moderate | contig1450 | 2044103 | A/G | |
FLD | c.125G>A | p.Ser42Asn | missense variant | moderate | contig1450 | 2047909 | C/T | |
PIE1-1 | c.811T>C | p.Tyr271His | missense variant | moderate | contig1225 | 2279935 | T/C | |
PIE1-1 | c.815C>T | p.Pro272Leu | missense variant | moderate | contig1225 | 2279939 | C/T | |
PIE1-1 | c.1222C>G | p.Gln408Glu | missense variant | moderate | contig1225 | 2281482 | C/G | |
PIE1-1 | c.1394A>G | p.Asp465Gly | missense variant | moderate | contig1225 | 2281654 | A/G | |
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
Nearest genetic relatives (All Samples)
- 0.083 Blue Dream (RSP11010)
- 0.080 Blue Dream (RSP11009)
- 0.054 Domnesia (RSP11184)
- 0.052 Lift (RSP11378)
- 0.006 AOAC MI 501 (RSP11748)
- 0.006 AOAC MI 569 (RSP11759)
- 0.005 AOAC MI 597 (RSP11761)
- 0.004 AOAC MI 532 (RSP11752)
- 0.004 AOAC MI 548 (RSP11757)
- 0.004 AOAC MI 542 (RSP11755)
- 0.002 AOAC MI 545 (RSP11756)
- 0.002 AOAC MI 588 (RSP11760)
- 0.006 AOAC MI 567 (RSP11758)
- 0.007 AOAC MI 599 (RSP11762)
- 0.008 AOAC MI 535 (RSP11754)
- 0.010 AOAC MI 504 (RSP11749)
- 0.010 AOAC MI 533 (RSP11753)
- 0.031 Serious Happiness (RSP10763)
- 0.036 Electra (RSP11366)
- 0.038 Doug s Varin (RSP11243)
Nearest genetic relatives (Base Tree)
- 0.225 RKM-2018-009 (RSP11100)
- 0.225 CST (RSP11002)
- 0.223 Pie Hoe (RSP11073)
- 0.223 RKM-2018-005 (RSP11096)
- 0.186 Gold Cracker (RSP11048)
- 0.182 Blue Dream (RSP11033)
- 0.173 Golden Goat 2 (RSP10991)
- 0.165 Hermaphrodite Research Sample1 (RSP11049)
- 0.161 UP Sunrise (RSP10989)
- 0.160 Durban Poison (RSP11014)
- 0.144 Liberty Haze (RSP11000)
- 0.083 Blueberry Cheesecake (RSP10684)
- 0.193 RKM-2018-033 (RSP11125)
- 0.200 RKM-2018-032 (RSP11124)
- 0.206 Kimbo Slice (RSP10997)
- 0.208 The Gift (RSP10988)
- 0.209 Recon (RSP10755)
- 0.212 RKM-2018-020 (RSP11112)
- 0.219 QUEEN JESUS (RSP10105)
- 0.222 Hermaphrodite ResearchSample2 (RSP11050)
Most genetically distant strains (All Samples)
- 0.417 80E (RSP11213)
- 0.396 80E (RSP11211)
- 0.383 JL yellow (RSP11075)
- 0.382 Tanao Sri-white 80 (RSP11621)
- 0.376 Tanao Sri 46 (RSP11486)
- 0.371 USO31 (RSP10233)
- 0.370 80E (RSP11212)
- 0.366 Tiger Tail 30 (RSP11484)
- 0.365 Feral (RSP11205)
- 0.363 Carmagnola (RSP11202)
- 0.362 Feral (RSP11206)
- 0.362 CS (RSP11208)
- 0.360 Northern Lights (RSP11501)
- 0.359 Carmaleonte (RSP11207)
- 0.358 Feral (RSP10892)
- 0.357 Squirrel Tail 81 (RSP11622)
- 0.356 Feral (RSP10890)
- 0.355 Kush Hemp E1 (RSP11128)
- 0.355 Unknown- Cherry Wine - 001 (RSP11268)
- 0.353 USO 31 (RSP10983)
Most genetically distant strains (Base Tree)
- 0.381 JL yellow (RSP11075)
- 0.367 Kush Hemp E1 (RSP11128)
- 0.363 Carmagnola (RSP11037)
- 0.360 Feral (RSP10890)
- 0.355 Monoica (RSP10241)
- 0.353 Santhica27 (RSP11047)
- 0.350 Futura 75 (RSP10664)
- 0.346 Ivory (RSP10668)
- 0.345 Cbot-2019-005 (RSP11133)
- 0.344 Carmagnola (RSP10979)
- 0.340 USO 31 (RSP10981)
- 0.331 KYRG-11 (RSP11051)
- 0.330 Kyrgyz Gold (RSP11054)
- 0.329 Fedora 17 (RSP10661)
- 0.326 Tisza (RSP11044)
- 0.321 Lovrin (RSP10658)
- 0.318 RKM-2018-026 (RSP11118)
- 0.312 Black Beauty (RSP11035)
- 0.308 Cherry (RSP11142)
- 0.308 RKM-2018-002 (RSP11093)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 54
- Concordance:
- 44
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 10
- Concordance:
- 10
Blockchain Registration Information
- SHASUM Hash
-
156945d3e387d27c
2f9ac5c1c4ae1d7e 04a82f216083dcd4 c89334ebb178959c