Advanced Strain Search

Pie Face Mac

RSP 11974

Grower: Happy Valley Ventures

Summary

Pie Face Mac (RSP11974/Happy Valley Ventures) is a genetic Type I plant and its genetics appear rare. The sample's closest relative in the database is Serious Happiness (RSP10763/Alternative Therapies Group) and it is a potential cousin. The heterozygosity rate is 0.99% which is average (50.9 percentile).

General Information

Accession Date
April 29, 2021
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.99%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0430
male female RSP11974

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)
THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000
THCAS c.749C>A p.Ala250Asp missense variant moderate contig741 4417079

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.632

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1944616

IGV: Start, Jump

C/T
NGS:
0.123
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.241G>A p.Val81Met missense variant moderate contig700 1951397

IGV: Start, Jump

C/T
NGS:
0.154
C90:
0.000
PKSG-2b

UniProt

c.240T>G p.Asp80Glu missense variant moderate contig700 1951398

IGV: Start, Jump

A/C
NGS:
0.156
C90:
0.000
PKSG-2b

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1951408

IGV: Start, Jump

A/G
NGS:
0.134
C90:
0.646
PKSG-2b

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1951414

IGV: Start, Jump

T/C
NGS:
0.151
C90:
0.957
PKSG-2b

UniProt

c.188T>G p.Ile63Ser missense variant moderate contig700 1951450

IGV: Start, Jump

A/C
NGS:
0.118
C90:
0.000
PKSG-2b

UniProt

c.187A>T p.Ile63Phe missense variant moderate contig700 1951451

IGV: Start, Jump

T/A
NGS:
0.116
C90:
0.000
PKSG-2b

UniProt

c.167C>G p.Thr56Ser missense variant moderate contig700 1951471

IGV: Start, Jump

G/C
NGS:
0.103
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.353_354insCC p.Gly119fs frameshift variant high contig700 2721319

IGV: Start, Jump

T/TGG
NGS:
0.175
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
DXR-2

UniProt

c.431C>G p.Ala144Gly missense variant moderate contig380 287760

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.550
FAD2-2

UniProt

c.62C>T p.Pro21Leu missense variant moderate contig83 1803307

IGV: Start, Jump

G/A
NGS:
0.042
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000
HDS-1

UniProt

c.-108+1_-108+2insG splice donor variant & intron variant high contig1891 889975

IGV: Start, Jump

A/AC
NGS:
0.217
C90:
0.000

Nearest genetic relatives (All Samples)

clone distance sibling distance more distant
  1. 0.214 Serious Happiness (RSP10763)
  2. 0.216 Domnesia (RSP11184)
  3. 0.229 Tahoe OG (RSP11189)
  4. 0.230 AOAC MI 504 (RSP11749)
  5. 0.230 AOAC MI 597 (RSP11761)
  6. 0.230 White Chronic (RSP11220)
  7. 0.231 AOAC MI 569 (RSP11759)
  8. 0.233 AOAC MI 535 (RSP11754)
  9. 0.233 AOAC MI 545 (RSP11756)
  10. 0.233 AOAC MI 533 (RSP11753)
  11. 0.233 AOAC MI 542 (RSP11755)
  12. 0.234 AOAC MI 567 (RSP11758)
  13. 0.234 AOAC MI 532 (RSP11752)
  14. 0.234 AOAC MI 501 (RSP11748)
  15. 0.235 AOAC MI 599 (RSP11762)
  16. 0.236 AOAC MI 548 (RSP11757)
  17. 0.237 AOAC MI 588 (RSP11760)
  18. 0.237 AOAC MI 508 (RSP11750)
  19. 0.241 Super Lemon Haze (RSP11641)
  20. 0.243 Electra (RSP11366)

Nearest genetic relatives (Base Tree)

clone distance sibling distance more distant
  1. 0.258 Hermaphrodite ResearchSample2 (RSP11050)
  2. 0.285 QUEEN JESUS (RSP10105)
  3. 0.289 UP Sunrise (RSP10989)
  4. 0.298 Liberty Haze (RSP11000)
  5. 0.300 RKM-2018-005 (RSP11096)
  6. 0.302 Gold Cracker (RSP11048)
  7. 0.305 Blueberry Cheesecake (RSP10684)
  8. 0.305 RKM-2018-031 (RSP11123)
  9. 0.309 Recon (RSP10755)
  10. 0.310 RKM-2018-029 (RSP11121)
  11. 0.311 Durban Poison (RSP11014)
  12. 0.313 RKM-2018-034 (RSP11126)
  13. 0.315 RKM-2018-033 (RSP11125)
  14. 0.317 RKM-2018-003 (RSP11094)
  15. 0.325 RKM-2018-019 (RSP11111)
  16. 0.325 RKM-2018-027 (RSP11119)
  17. 0.325 Blue Dream (RSP11033)
  18. 0.325 RKM-2018-032 (RSP11124)
  19. 0.329 Kimbo Slice (RSP10997)
  20. 0.331 RKM-2018-009 (RSP11100)

Most genetically distant strains (All Samples)

clone distance sibling distance more distant
  1. 0.447 JL yellow (RSP11075)
  2. 0.447 JL 3rd Gen Mother (RSP11214)
  3. 0.447 Cherry Blossom (RSP11323)
  4. 0.440 Unknown- Cherry Wine - 001 (RSP11268)
  5. 0.438 Tanao Sri 46 (RSP11486)
  6. 0.429 Ringo s Gift Katie s Cut (RSP11624)
  7. 0.429 Danny Noonan (RSP11070)
  8. 0.427 JL 4th Gen 1 (RSP11193)
  9. 0.427 GG4 (RSP11978)
  10. 0.422 Queen Dream CBG (RSP11295)
  11. 0.421 AVIDEKEL 2 0 (RSP11174)
  12. 0.414 Kush Hemp E1 (RSP11128)
  13. 0.412 JL 3rd Gen Mother (RSP11197)
  14. 0.412 JL x NSPM1 4 (RSP11482)
  15. 0.410 80E (RSP11213)
  16. 0.408 Cherry Blossom (RSP11318)
  17. 0.408 Tanao Sri-white 80 (RSP11621)
  18. 0.400 Feral (RSP10892)
  19. 0.400 USO31 (RSP10233)
  20. 0.400 Lemon Skunk (RSP11229)

Most genetically distant strains (Base Tree)

clone distance sibling distance more distant
  1. 0.449 JL yellow (RSP11075)
  2. 0.418 Kush Hemp E1 (RSP11128)
  3. 0.414 Monoica (RSP10241)
  4. 0.411 Feral (RSP10890)
  5. 0.409 Cbot-2019-001 (RSP11129)
  6. 0.408 RKM-2018-028 (RSP11120)
  7. 0.407 Carmagnola (RSP10979)
  8. 0.406 Kyrgyz Gold (RSP11054)
  9. 0.405 RKM-2018-026 (RSP11118)
  10. 0.398 Ivory (RSP10668)
  11. 0.395 Cherry (RSP11143)
  12. 0.391 Skunk 18 (RSP11038)
  13. 0.391 Black Beauty (RSP11035)
  14. 0.389 RKM-2018-018 (RSP11110)
  15. 0.389 Santhica27 (RSP11047)
  16. 0.385 Fedora 17 (RSP10661)
  17. 0.385 Futura 75 (RSP10664)
  18. 0.383 Carmagnola (RSP11037)
  19. 0.379 Tisza (RSP11044)
  20. 0.378 Lovrin (RSP10658)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346983
Overlapping SNPs:
73
Concordance:
45

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495246
Overlapping SNPs:
5
Concordance:
4

Blockchain Registration Information

Transaction ID
aab11506d9e8c0751751395121ab71ff8f2b5dde8834a9bc2776bdc9042517f2
Stamping Certificate
Download PDF (39.7 KB)
SHASUM Hash
1606066aa980de8e9ccbef59f74d46ddfcbd8a60522b8a655082c0e6d7b8a783
QR code for RSP11974

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