Lemon OG Haze

RSP 11977

Grower: Happy Valley Ventures

Summary

Lemon OG Haze (RSP11977/Happy Valley Ventures) is a genetic Type I plant and its genetics appear rare. The sample's closest relative in the database is GG#4 (RSP11461/Happy Valley) and it is a potential sibling. The heterozygosity rate is 1.03% which is average (56.8 percentile).

General Information

Accession Date
April 29, 2021
Reported Plant Sex
not reported

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.03%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0461
male female RSP11977

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.749C>A p.Ala250Asp missense variant moderate contig741 4417079

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.632

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1944442

IGV: Start, Jump

A/C
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1944445

IGV: Start, Jump

A/C
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1944446

IGV: Start, Jump

C/T
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
DXR-2

UniProt

c.431C>G p.Ala144Gly missense variant moderate contig380 287760

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.550
FAD2-2

UniProt

c.172G>T p.Asp58Tyr missense variant moderate contig83 1803197

IGV: Start, Jump

C/A
NGS:
0.070
C90:
0.000
FAD2-2

UniProt

c.161T>A p.Leu54His missense variant moderate contig83 1803208

IGV: Start, Jump

A/T
NGS:
0.156
C90:
0.000
aPT4

UniProt

c.16G>A p.Val6Ile missense variant moderate contig121 2828672

IGV: Start, Jump

G/A
NGS:
0.158
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000
HDS-1

UniProt

c.-108+1_-108+2insG splice donor variant & intron variant high contig1891 889975

IGV: Start, Jump

A/AC
NGS:
0.217
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.166 GG#4 (RSP11461)
  2. 0.176 GG4 (RSP11978)
  3. 0.184 RKM-2018-032 (RSP11124)
  4. 0.184 RKM-2018-021 (RSP11113)
  5. 0.185 RKM-2018-017 (RSP11109)
  6. 0.188 GG4 (RSP12096)
  7. 0.195 Super Lemon Haze (RSP11641)
  8. 0.206 Tahoe OG (RSP11189)
  9. 0.209 SHERBERT (RSP11355)
  10. 0.210 Jolly Rancher (RSP11639)
  11. 0.212 Lime OG (RSP12101)
  12. 0.214 Thank You Jerry (RSP11459)
  13. 0.221 Lift (RSP11378)
  14. 0.222 Super Sour Diesel (RSP11191)
  15. 0.223 Electra (RSP11366)
  16. 0.227 Domnesia (RSP11184)
  17. 0.228 JL Cross 10 (RSP11511)
  18. 0.228 Mother s Milk No 31 (RSP11623)
  19. 0.229 Blueberry Cheesecake (RSP10684)
  20. 0.231 501st OG (RSP11241)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.187 RKM-2018-032 (RSP11124)
  2. 0.247 Blueberry Cheesecake (RSP10684)
  3. 0.254 Liberty Haze (RSP11000)
  4. 0.263 Golden Goat 2 (RSP10991)
  5. 0.266 RKM-2018-020 (RSP11112)
  6. 0.273 RKM-2018-002 (RSP11093)
  7. 0.273 The Gift (RSP10988)
  8. 0.277 Skywalker OG (RSP10837)
  9. 0.284 Durban Poison (RSP11014)
  10. 0.285 Gold Cracker (RSP11048)
  11. 0.289 RKM-2018-009 (RSP11100)
  12. 0.290 Hermaphrodite Research Sample1 (RSP11049)
  13. 0.294 RKM-2018-033 (RSP11125)
  14. 0.294 RKM-2018-004 (RSP11096)
  15. 0.301 RKM-2018-027 (RSP11119)
  16. 0.302 Cbot-2019-001 (RSP11129)
  17. 0.302 Blue Dream (RSP11033)
  18. 0.303 Kimbo Slice (RSP10997)
  19. 0.305 RKM-2018-026 (RSP11118)
  20. 0.306 Sour Raspberry (RSP10551)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.473 Unknown--Cherry Wine---001- (RSP11268)
  2. 0.470 Unknown--Cherry Wine---003- (RSP11270)
  3. 0.466 Cherry Blossom (RSP11323)
  4. 0.461 Unknown--Cherry Wine---004- (RSP11271)
  5. 0.454 Cherry Blossom (RSP11298)
  6. 0.453 Unknown--Cherry Wine---002- (RSP11269)
  7. 0.450 80E (RSP11213)
  8. 0.448 Cherry Blossom (RSP11311)
  9. 0.445 Cherry Blossom (RSP11328)
  10. 0.439 Cherry Blossom (RSP11317)
  11. 0.437 Cherry Blossom (RSP11334)
  12. 0.436 JL 3rd Gen Mother (RSP11214)
  13. 0.435 JL yellow (RSP11075)
  14. 0.433 Cherry Blossom (RSP11309)
  15. 0.430 BagSeed (RSP12627)
  16. 0.429 Northern Lights (RSP11501)
  17. 0.427 IUP3 (SRR14708256)
  18. 0.423 R1 (RSP11483)
  19. 0.423 80E (RSP11211)
  20. 0.422 Tanao Sri -46- (RSP11486)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.428 JL yellow (RSP11075)
  2. 0.409 Feral (RSP10890)
  3. 0.395 Monoica (RSP10241)
  4. 0.389 Cbot-2019-005 (RSP11133)
  5. 0.389 Santhica27 (RSP11047)
  6. 0.387 Carmagnola (RSP11037)
  7. 0.380 Jiangji (RSP10653)
  8. 0.376 Futura 75 (RSP10664)
  9. 0.376 Kyrgyz Gold (RSP11054)
  10. 0.373 Carmagnola (RSP10979)
  11. 0.370 RKM-2018-022 (RSP11114)
  12. 0.370 Fedora 17 (RSP10661)
  13. 0.367 Cbot-2019-004 (RSP11132)
  14. 0.366 Ivory (RSP10668)
  15. 0.363 Tisza (RSP11044)
  16. 0.362 KYRG-11 (RSP11051)
  17. 0.362 Cherry (RSP11143)
  18. 0.360 Black Beauty (RSP11035)
  19. 0.360 USO 31 (RSP10981)
  20. 0.355 RKM-2018-003 (RSP11094)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448817
Overlapping SNPs:
81
Concordance:
51

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495160
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

Transaction ID
db749d288455cc0dc93be2fb4c9e8c244cde8c1e3a05c99f71831ab8de409303
Stamping Certificate
Download PDF (39.5 KB)
SHASUM Hash
800894df33bff032db5790eb6d03dedb170c4c14422eb327ae073618c792cf84
QR code for RSP11977

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