Lemon OG Haze

RSP 11977

Grower: Happy Valley Ventures

Summary

Lemon OG Haze (RSP11977/Happy Valley Ventures) is a genetic Type I plant and its genetics appear rare. The sample's closest relative in the database is GG#4 (RSP11461/Happy Valley) and it is a potential sibling. The heterozygosity rate is 1.03% which is average (56.8 percentile).

General Information

Accession Date
April 29, 2021
Reported Plant Sex
not reported

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.03%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0461
male female RSP11977

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.749C>A p.Ala250Asp missense variant moderate contig741 4417079

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.632

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1944442

IGV: Start, Jump

A/C
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1944445

IGV: Start, Jump

A/C
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1944446

IGV: Start, Jump

C/T
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
DXR-2

UniProt

c.431C>G p.Ala144Gly missense variant moderate contig380 287760

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.550
FAD2-2

UniProt

c.172G>T p.Asp58Tyr missense variant moderate contig83 1803197

IGV: Start, Jump

C/A
NGS:
0.070
C90:
0.000
FAD2-2

UniProt

c.161T>A p.Leu54His missense variant moderate contig83 1803208

IGV: Start, Jump

A/T
NGS:
0.156
C90:
0.000
aPT4

UniProt

c.16G>A p.Val6Ile missense variant moderate contig121 2828672

IGV: Start, Jump

G/A
NGS:
0.158
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000
HDS-1

UniProt

c.-108+1_-108+2insG splice donor variant & intron variant high contig1891 889975

IGV: Start, Jump

A/AC
NGS:
0.217
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.177 GG 4 (RSP11461)
  2. 0.194 GG4 (RSP11978)
  3. 0.194 RKM-2018-021 (RSP11113)
  4. 0.195 RKM-2018-032 (RSP11124)
  5. 0.197 RKM-2018-017 (RSP11109)
  6. 0.204 Electra (RSP11366)
  7. 0.205 Domnesia (RSP11184)
  8. 0.214 Liberty Haze (RSP11000)
  9. 0.214 Tahoe OG (RSP11189)
  10. 0.218 JL Cross 10 (RSP11511)
  11. 0.219 QLE1 (RSP11451)
  12. 0.220 AOAC MI 548 (RSP11757)
  13. 0.220 CPH (RSP11367)
  14. 0.221 Lift (RSP11378)
  15. 0.222 CBG- 40 (RSP11444)
  16. 0.222 Suver Haze (RSP11364)
  17. 0.222 SHERBERT (RSP11355)
  18. 0.222 AOAC MI 501 (RSP11748)
  19. 0.222 AOAC MI 532 (RSP11752)
  20. 0.222 Joy (RSP11380)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.205 RKM-2018-032 (RSP11124)
  2. 0.238 Liberty Haze (RSP11000)
  3. 0.246 Blueberry Cheesecake (RSP10684)
  4. 0.248 Golden Goat 2 (RSP10991)
  5. 0.281 The Gift (RSP10988)
  6. 0.282 Cbot-2019-001 (RSP11129)
  7. 0.284 UP Sunrise (RSP10989)
  8. 0.289 Skywalker OG (RSP10837)
  9. 0.297 Kimbo Slice (RSP10997)
  10. 0.297 RKM-2018-005 (RSP11096)
  11. 0.298 Hermaphrodite Research Sample1 (RSP11049)
  12. 0.299 Gold Cracker (RSP11048)
  13. 0.303 RKM-2018-020 (RSP11112)
  14. 0.308 Durban Poison (RSP11014)
  15. 0.314 RKM-2018-002 (RSP11093)
  16. 0.326 RKM-2018-029 (RSP11121)
  17. 0.329 RKM-2018-023 (RSP11115)
  18. 0.329 RKM-2018-033 (RSP11125)
  19. 0.329 Recon (RSP10755)
  20. 0.330 Blue Dream (RSP11033)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.478 Northern Lights (RSP11501)
  2. 0.470 80E (RSP11213)
  3. 0.459 Unknown- Cherry Wine - 001 (RSP11268)
  4. 0.456 JL yellow (RSP11075)
  5. 0.456 JL 3rd Gen Mother (RSP11214)
  6. 0.451 Unknown- Cherry Wine - 004 (RSP11271)
  7. 0.436 80E (RSP11211)
  8. 0.434 R3 (RSP11616)
  9. 0.432 Unknown- Cherry Wine - 002 (RSP11269)
  10. 0.428 Unknown- Cherry Wine - 003 (RSP11270)
  11. 0.426 Tanao Sri 46 (RSP11486)
  12. 0.426 80E (RSP11212)
  13. 0.425 Santhica27 (RSP11047)
  14. 0.425 Santhica27 (RSP11046)
  15. 0.423 R4 (RSP11617)
  16. 0.423 JL 3rd Gen Father (RSP11196)
  17. 0.421 Feral (RSP10890)
  18. 0.420 JL 3rd Gen Mother (RSP11197)
  19. 0.419 Feral (RSP10891)
  20. 0.418 JL 4th Gen 6 (RSP11200)

Most genetically distant strains (Base Tree)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.442 JL yellow (RSP11075)
  2. 0.421 Feral (RSP10890)
  3. 0.421 Carmagnola (RSP11037)
  4. 0.417 Monoica (RSP10241)
  5. 0.414 RKM-2018-022 (RSP11114)
  6. 0.413 Cbot-2019-005 (RSP11133)
  7. 0.410 Santhica27 (RSP11047)
  8. 0.408 Futura 75 (RSP10664)
  9. 0.406 RKM-2018-003 (RSP11094)
  10. 0.406 Italian Kiss (RSP11034)
  11. 0.404 Kyrgyz Gold (RSP11054)
  12. 0.401 Cbot-2019-004 (RSP11132)
  13. 0.401 Jiangji (RSP10653)
  14. 0.388 Ivory (RSP10668)
  15. 0.386 Carmagnola (RSP10979)
  16. 0.386 Fedora 17 (RSP10661)
  17. 0.383 USO 31 (RSP10981)
  18. 0.383 RKM-2018-019 (RSP11111)
  19. 0.372 Skunk 18 (RSP11038)
  20. 0.371 Tisza (RSP11044)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448817
Overlapping SNPs:
81
Concordance:
51

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495160
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

Transaction ID
db749d288455cc0dc93be2fb4c9e8c244cde8c1e3a05c99f71831ab8de409303
Stamping Certificate
Download PDF (39.5 KB)
SHASUM Hash
800894df33bff032db5790eb6d03dedb170c4c14422eb327ae073618c792cf84
QR code for RSP11977

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