Lemon OG Haze
RSP 11977
Grower: Happy Valley Ventures
Summary
Lemon OG Haze (RSP11977/Happy Valley Ventures) is a genetic Type I plant and its genetics appear rare. The sample's closest relative in the database is GG#4 (RSP11461/Happy Valley) and it is a potential sibling. The heterozygosity rate is 1.03% which is average (56.8 percentile).
General Information
- Accession Date
- April 29, 2021
- Reported Plant Sex
- not reported
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-2a | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1944442 | A/C |
|
PKSG-2a | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1944445 | A/C |
|
PKSG-2a | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1944446 | C/T |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
DXR-2 | c.431C>G | p.Ala144Gly | missense variant | moderate | contig380 | 287760 | G/C | |
FAD2-2 | c.172G>T | p.Asp58Tyr | missense variant | moderate | contig83 | 1803197 | C/A |
|
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
aPT4 | c.16G>A | p.Val6Ile | missense variant | moderate | contig121 | 2828672 | G/A |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT4 | c.302A>G | p.Asn101Ser | missense variant | moderate | contig121 | 2829099 | A/G |
|
aPT4 | c.775delT | p.Tyr259fs | frameshift variant | high | contig121 | 2831380 | AT/A |
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
HDS-1 |
c.-108+1_-10 |
splice donor variant & intron variant | high | contig1891 | 889975 | A/AC |
|
Nearest genetic relatives (All Samples)
- 0.166 GG#4 (RSP11461)
- 0.176 GG4 (RSP11978)
- 0.184 RKM-2018-032 (RSP11124)
- 0.184 RKM-2018-021 (RSP11113)
- 0.185 RKM-2018-017 (RSP11109)
- 0.188 GG4 (RSP12096)
- 0.195 Super Lemon Haze (RSP11641)
- 0.206 Tahoe OG (RSP11189)
- 0.209 SHERBERT (RSP11355)
- 0.210 Jolly Rancher (RSP11639)
- 0.212 Lime OG (RSP12101)
- 0.214 Thank You Jerry (RSP11459)
- 0.221 Lift (RSP11378)
- 0.222 Super Sour Diesel (RSP11191)
- 0.223 Electra (RSP11366)
- 0.227 Domnesia (RSP11184)
- 0.228 JL Cross 10 (RSP11511)
- 0.228 Mother s Milk No 31 (RSP11623)
- 0.229 Blueberry Cheesecake (RSP10684)
- 0.231 501st OG (RSP11241)
Nearest genetic relatives (Base Tree)
- 0.187 RKM-2018-032 (RSP11124)
- 0.247 Blueberry Cheesecake (RSP10684)
- 0.254 Liberty Haze (RSP11000)
- 0.263 Golden Goat 2 (RSP10991)
- 0.266 RKM-2018-020 (RSP11112)
- 0.273 RKM-2018-002 (RSP11093)
- 0.273 The Gift (RSP10988)
- 0.277 Skywalker OG (RSP10837)
- 0.284 Durban Poison (RSP11014)
- 0.285 Gold Cracker (RSP11048)
- 0.289 RKM-2018-009 (RSP11100)
- 0.290 Hermaphrodite Research Sample1 (RSP11049)
- 0.294 RKM-2018-033 (RSP11125)
- 0.294 RKM-2018-004 (RSP11096)
- 0.301 RKM-2018-027 (RSP11119)
- 0.302 Cbot-2019-001 (RSP11129)
- 0.302 Blue Dream (RSP11033)
- 0.303 Kimbo Slice (RSP10997)
- 0.305 RKM-2018-026 (RSP11118)
- 0.306 Sour Raspberry (RSP10551)
Most genetically distant strains (All Samples)
- 0.473 Unknown--Cherry Wine---001- (RSP11268)
- 0.470 Unknown--Cherry Wine---003- (RSP11270)
- 0.466 Cherry Blossom (RSP11323)
- 0.461 Unknown--Cherry Wine---004- (RSP11271)
- 0.454 Cherry Blossom (RSP11298)
- 0.453 Unknown--Cherry Wine---002- (RSP11269)
- 0.450 80E (RSP11213)
- 0.448 Cherry Blossom (RSP11311)
- 0.445 Cherry Blossom (RSP11328)
- 0.439 Cherry Blossom (RSP11317)
- 0.437 Cherry Blossom (RSP11334)
- 0.436 JL 3rd Gen Mother (RSP11214)
- 0.435 JL yellow (RSP11075)
- 0.433 Cherry Blossom (RSP11309)
- 0.430 BagSeed (RSP12627)
- 0.429 Northern Lights (RSP11501)
- 0.427 IUP3 (SRR14708256)
- 0.423 R1 (RSP11483)
- 0.423 80E (RSP11211)
- 0.422 Tanao Sri -46- (RSP11486)
Most genetically distant strains (Base Tree)
- 0.428 JL yellow (RSP11075)
- 0.409 Feral (RSP10890)
- 0.395 Monoica (RSP10241)
- 0.389 Cbot-2019-005 (RSP11133)
- 0.389 Santhica27 (RSP11047)
- 0.387 Carmagnola (RSP11037)
- 0.380 Jiangji (RSP10653)
- 0.376 Futura 75 (RSP10664)
- 0.376 Kyrgyz Gold (RSP11054)
- 0.373 Carmagnola (RSP10979)
- 0.370 RKM-2018-022 (RSP11114)
- 0.370 Fedora 17 (RSP10661)
- 0.367 Cbot-2019-004 (RSP11132)
- 0.366 Ivory (RSP10668)
- 0.363 Tisza (RSP11044)
- 0.362 KYRG-11 (RSP11051)
- 0.362 Cherry (RSP11143)
- 0.360 Black Beauty (RSP11035)
- 0.360 USO 31 (RSP10981)
- 0.355 RKM-2018-003 (RSP11094)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 81
- Concordance:
- 51
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 4
- Concordance:
- 4
Blockchain Registration Information
- Transaction ID
-
db749d288455cc0d
c93be2fb4c9e8c24 4cde8c1e3a05c99f 71831ab8de409303 - Stamping Certificate
- Download PDF (39.5 KB)
- SHASUM Hash
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800894df33bff032
db5790eb6d03dedb 170c4c14422eb327 ae073618c792cf84