Strawnana
RSP 12094
Grower: Collin Palmer
General Information
- Accession Date
- September 16, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
EMF1-2 | c.634G>C | p.Val212Leu | missense variant | moderate | contig885 | 734 | G/C | |
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
EMF1-2 | c.1187T>C | p.Leu396Ser | missense variant | moderate | contig885 | 2073 | T/C |
|
EMF1-2 | c.1384A>C | p.Lys462Gln | missense variant | moderate | contig885 | 2270 | A/C | |
EMF1-2 | c.2256A>T | p.Lys752Asn | missense variant | moderate | contig885 | 3142 | A/T |
|
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.1540A>G | p.Thr514Ala | missense variant | moderate | contig2621 | 340818 | A/G | |
PHL-2 | c.2756A>C | p.Glu919Ala | missense variant | moderate | contig2621 | 342799 | A/C | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.3002A>G | p.Tyr1001Cys | missense variant | moderate | contig2621 | 343045 | A/G | |
PHL-2 | c.3027G>T | p.Lys1009Asn | missense variant | moderate | contig2621 | 343070 | G/T | |
PHL-2 | c.3033T>G | p.Cys1011Trp | missense variant | moderate | contig2621 | 343076 | T/G | |
PHL-2 | c.3202A>C | p.Thr1068Pro | missense variant | moderate | contig2621 | 343245 | A/C |
|
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.718T>A | p.Phe240Ile | missense variant | moderate | contig700 | 1950920 | A/T |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
OAC-1 | c.260C>G | p.Ser87Cys | missense variant | moderate | contig931 | 118104 | G/C |
|
FAD2-2 | c.256G>A | p.Gly86Arg | missense variant | moderate | contig83 | 1803113 | C/T |
|
FAD2-2 | c.196T>C | p.Phe66Leu | missense variant | moderate | contig83 | 1803173 | A/G |
|
FAD2-2 | c.182T>A | p.Val61Glu | missense variant | moderate | contig83 | 1803187 | A/T |
|
FAD2-2 | c.172G>T | p.Asp58Tyr | missense variant | moderate | contig83 | 1803197 | C/A |
|
FAD2-2 | c.164A>G | p.His55Arg | missense variant | moderate | contig83 | 1803205 | T/C |
|
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
FAD2-2 | c.153G>T | p.Arg51Ser | missense variant | moderate | contig83 | 1803216 | C/A |
|
FAD2-2 | c.64G>T | p.Ala22Ser | missense variant | moderate | contig83 | 1803305 | C/A |
|
FAD2-2 | c.58C>T | p.His20Tyr | missense variant | moderate | contig83 | 1803311 | G/A |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 | c.574A>G | p.Asn192Asp | missense variant | moderate | contig97 | 242280 | A/G | |
ELF3 | c.757C>T | p.Pro253Ser | missense variant | moderate | contig97 | 242463 | C/T | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.811G>A | p.Gly271Arg | missense variant | moderate | contig97 | 242517 | G/A |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 | c.1473A>C | p.Lys491Asn | missense variant | moderate | contig97 | 244304 | A/C |
|
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 |
c.1803_1805d |
p.His601del | disruptive inframe deletion | moderate | contig97 | 244625 | ACAT/A |
|
ELF3 | c.1807G>C | p.Gly603Arg | missense variant | moderate | contig97 | 244638 | G/C |
|
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.1982A>C | p.Asn661Thr | missense variant | moderate | contig97 | 244813 | A/C |
|
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
ELF5 | c.853C>T | p.Pro285Ser | missense variant | moderate | contig382 | 880715 | C/T | |
aPT4 | c.202T>A | p.Leu68Ile | missense variant | moderate | contig121 | 2828858 | T/A |
|
aPT4 | c.439T>A | p.Ser147Thr | missense variant | moderate | contig121 | 2830634 | T/A |
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
aPT1 | c.220A>G | p.Ile74Val | missense variant | moderate | contig121 | 2835927 | A/G | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 | c.884C>T | p.Thr295Ile | missense variant | moderate | contig81 | 209846 | C/T |
|
AAE1-2 |
c.948_949ins |
p.Asp317fs | frameshift variant | high | contig81 | 209910 | C/CA |
|
AAE1-2 | c.952delC | p.Gln318fs | frameshift variant | high | contig81 | 209912 | AC/A |
|
AAE1-2 | c.953A>G | p.Gln318Arg | missense variant | moderate | contig81 | 209915 | A/G |
|
AAE1-2 | c.955C>T | p.Arg319Cys | missense variant | moderate | contig81 | 209917 | C/T |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
|
AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
|
AAE1-2 | c.1434G>T | p.Glu478Asp | missense variant | moderate | contig81 | 210396 | G/T |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
Edestin |
c.130_131ins |
p.Gly43_Ser4 |
stop gained & conservative inframe insertion | high | contig850 | 3065159 | G/GACT |
|
Edestin |
c.130_131ins |
p.Gly43_Ser4 |
conservative inframe insertion | moderate | contig850 | 3065159 | G/GAAT |
|
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 | c.35G>A | p.Cys12Tyr | missense variant | moderate | contig1891 | 889357 | C/T | |
HDS-1 |
c.-108+1_-10 |
splice donor variant & intron variant | high | contig1891 | 889975 | A/AC |
|
|
PIE1-2 | c.6773T>C | p.Leu2258Ser | missense variant | moderate | contig1460 | 1184314 | A/G | |
PIE1-2 | c.6653A>G | p.Asn2218Ser | missense variant | moderate | contig1460 | 1184434 | T/C | |
PIE1-2 | c.6636T>G | p.Asp2212Glu | missense variant | moderate | contig1460 | 1184451 | A/C | |
PIE1-2 | c.6623C>T | p.Ala2208Val | missense variant | moderate | contig1460 | 1184464 | G/A | |
PIE1-2 | c.6055C>T | p.Leu2019Phe | missense variant | moderate | contig1460 | 1185429 | G/A | |
PIE1-2 |
c.2083_2085d |
p.Val695del | conservative inframe deletion | moderate | contig1460 | 1189954 | GGAC/G | |
PIE1-2 | c.2072A>G | p.His691Arg | missense variant | moderate | contig1460 | 1189968 | T/C | |
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
PIE1-2 | c.1630G>C | p.Ala544Pro | missense variant | moderate | contig1460 | 1191600 | C/G | |
PIE1-2 | c.1289A>G | p.Asp430Gly | missense variant | moderate | contig1460 | 1192109 | T/C |
|
PIE1-2 | c.710C>T | p.Pro237Leu | missense variant | moderate | contig1460 | 1193804 | G/A | |
PIE1-2 | c.706T>C | p.Tyr236His | missense variant | moderate | contig1460 | 1193808 | A/G | |
PIE1-2 | c.637T>A | p.Ser213Thr | missense variant | moderate | contig1460 | 1194421 | A/T | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
EMF1-1 | c.242A>G | p.Lys81Arg | missense variant | moderate | contig883 | 269731 | A/G | |
EMF1-1 | c.470C>A | p.Ser157Tyr | missense variant | moderate | contig883 | 269959 | C/A | |
EMF1-1 | c.605A>T | p.His202Leu | missense variant | moderate | contig883 | 270210 | A/T | |
FLD | c.2981T>C | p.Met994Thr | missense variant | moderate | contig1450 | 2044012 | A/G | |
FLD | c.2964C>A | p.Asp988Glu | missense variant | moderate | contig1450 | 2044029 | G/T | |
FLD | c.2962G>A | p.Asp988Asn | missense variant | moderate | contig1450 | 2044031 | C/T |
|
FLD | c.2840A>G | p.Asn947Ser | missense variant | moderate | contig1450 | 2044192 | T/C |
|
FLD | c.2686G>A | p.Ala896Thr | missense variant | moderate | contig1450 | 2044848 | C/T | |
FLD | c.2681T>C | p.Ile894Thr | missense variant | moderate | contig1450 | 2044853 | A/G | |
FLD | c.2585G>A | p.Arg862Gln | missense variant | moderate | contig1450 | 2045075 | C/T |
|
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
AAE1-3 | c.382T>C | p.Tyr128His | missense variant | moderate | contig976 | 1083643 | A/G |
|
AAE1-3 | c.293A>G | p.Asp98Gly | missense variant | moderate | contig976 | 1083732 | T/C |
|
AAE1-3 | c.284A>T | p.Glu95Val | missense variant | moderate | contig976 | 1083741 | T/A |
|
AAE1-3 | c.214G>T | p.Glu72* | stop gained | high | contig976 | 1083861 | C/A |
|
AAE1-3 | c.181G>A | p.Val61Ile | missense variant | moderate | contig976 | 1083894 | C/T |
|
AAE1-3 | c.179C>T | p.Thr60Ile | missense variant | moderate | contig976 | 1083896 | G/A |
|
AAE1-3 | c.167A>G | p.Glu56Gly | missense variant | moderate | contig976 | 1083908 | T/C |
|
AAE1-3 | c.125A>G | p.Glu42Gly | missense variant | moderate | contig976 | 1083950 | T/C |
|
AAE1-3 | c.104T>C | p.Leu35Pro | missense variant | moderate | contig976 | 1083971 | A/G |
|
AAE1-3 | c.79A>G | p.Thr27Ala | missense variant | moderate | contig976 | 1083996 | T/C |
|
AAE1-3 | c.52G>A | p.Gly18Ser | missense variant | moderate | contig976 | 1084023 | C/T |
|
PIE1-1 | c.100G>A | p.Glu34Lys | missense variant | moderate | contig1225 | 2277786 | G/A | |
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
PKSB-3 | c.1652A>G | p.Glu551Gly | missense variant | moderate | contig93 | 3339759 | A/G |
|
Nearest genetic relatives (All Samples)
- 0.159 Kompolti (SRR14708277)
- 0.164 B52 (SRR14708255)
- 0.167 VIR 469 (SRR14708242)
- 0.169 VIR 483 (SRR14708238)
- 0.177 Lift (RSP11378)
- 0.178 Electra (RSP11366)
- 0.178 Wild Thailand (SRR14708216)
- 0.179 R2in135 (SRR14708236)
- 0.180 BLACK JACK (RSP11346)
- 0.181 Chamaeleon (SRR14708197)
- 0.181 PCL1 (SRR14708246)
- 0.181 Doug s Varin (RSP11243)
- 0.184 XBL2 (SRR14708206)
- 0.184 QHI (SRR14708202)
- 0.189 Black Jack (RSP10603)
- 0.189 RKM-2018-016 (RSP11108)
- 0.190 XUM1 (SRR14708205)
- 0.194 RKM-2018-025 (RSP11117)
- 0.194 Blueberry Cheesecake (RSP10684)
- 0.195 VIR 37 - Novgorod-Seversky - cv (SRR14708234)
Nearest genetic relatives (Base Tree)
- 0.182 Blueberry Cheesecake (RSP10684)
- 0.200 Liberty Haze (RSP11000)
- 0.212 RKM-2018-027 (RSP11119)
- 0.223 Gold Cracker (RSP11048)
- 0.224 Durban Poison (RSP11014)
- 0.241 UP Sunrise (RSP10989)
- 0.244 RKM-2018-006 (RSP11097)
- 0.249 RKM-2018-031 (RSP11123)
- 0.253 Recon (RSP10755)
- 0.255 Hermaphrodite ResearchSample2 (RSP11050)
- 0.256 RKM-2018-020 (RSP11112)
- 0.268 Tisza (RSP10659)
- 0.274 Italian Kiss (RSP11034)
- 0.279 Blue Dream (RSP11033)
- 0.283 Golden Goat 2 (RSP10991)
- 0.285 CST (RSP11002)
- 0.288 Blueberry Cheesecake (RSP10680)
- 0.289 Tygra (RSP10667)
- 0.292 Pie Hoe (RSP11073)
- 0.294 RKM-2018-009 (RSP11100)
Most genetically distant strains (All Samples)
- 0.436 RKM-2018-002 (RSP11093)
- 0.429 Kush Hemp E1 (RSP11128)
- 0.428 Cherry Blossom (RSP11323)
- 0.413 RKM-2018-012 (RSP11103)
- 0.411 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.400 Cbot-2019-005 (RSP11133)
- 0.398 Right Mark (RSP11628)
- 0.398 Fatso (RSP11741)
- 0.396 Chem 91 (RSP11185)
- 0.394 Black Triangle (RSP11638)
- 0.392 Abacus (RSP11266)
- 0.389 RKM-2018-034 (RSP11126)
- 0.388 JL 4th Gen 2 (RSP11194)
- 0.386 Feral (RSP10891)
- 0.386 New York City Deisel (RSP11225)
- 0.384 JL 3rd Gen Father (RSP11196)
- 0.383 JL 2 (RSP11076)
- 0.378 Cherry Blossom (RSP11312)
- 0.378 GMO x Zkittlez 43 (RSP11976)
- 0.375 Feral (RSP11205)
Most genetically distant strains (Base Tree)
- 0.434 RKM-2018-002 (RSP11093)
- 0.407 Kush Hemp E1 (RSP11128)
- 0.394 Cbot-2019-005 (RSP11133)
- 0.376 RKM-2018-034 (RSP11126)
- 0.369 Feral (RSP10890)
- 0.353 Skywalker OG (RSP10837)
- 0.351 Carmagnola (RSP11037)
- 0.350 Blueberry Cheesecake (RSP10672)
- 0.349 RKM-2018-032 (RSP11124)
- 0.346 JL yellow (RSP11075)
- 0.345 Monoica (RSP10241)
- 0.343 Santhica27 (RSP11047)
- 0.340 Cherry (RSP11142)
- 0.339 Tisza (RSP11044)
- 0.338 RKM-2018-019 (RSP11111)
- 0.336 Cbot-2019-006 (RSP11134)
- 0.331 RKM-2018-005 (RSP11096)
- 0.328 Hermaphrodite Research Sample1 (RSP11049)
- 0.326 Futura 75 (RSP10664)
- 0.324 KYRG-11 (RSP11051)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 53
- Concordance:
- 53
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 6
- Concordance:
- 6
Blockchain Registration Information
- SHASUM Hash
-
6954d6cc3ce028ac
d5c654d2cbafd1a5 9c87e48f8f4a0d04 5c5811c88f5bdf9d