Triangle Kush x Square Wave BX

RSP 12100

Grower: Collin Palmer

General Information

Accession Date
September 16, 2021
Reported Plant Sex
not reported

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.27%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0205
male female RSP12100

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
FAD2-2

UniProt

c.367G>T p.Gly123Cys missense variant moderate contig83 1803002

IGV: Start, Jump

C/A
NGS:
0.000
C90:
0.000
ELF3

UniProt

c.520A>C p.Asn174His missense variant moderate contig97 242226

IGV: Start, Jump

A/C
NGS:
0.094
C90:
0.502
ELF3

UniProt

c.812G>C p.Gly271Ala missense variant moderate contig97 242518

IGV: Start, Jump

G/C
NGS:
0.114
C90:
0.938
ELF3

UniProt

c.1630A>G p.Thr544Ala missense variant moderate contig97 244461

IGV: Start, Jump

A/G
NGS:
0.103
C90:
0.545
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.216A>T p.Lys72Asn missense variant moderate contig121 2828872

IGV: Start, Jump

A/T
NGS:
0.075
C90:
0.000
AAE1-2

UniProt

c.331A>G p.Asn111Asp missense variant moderate contig81 209293

IGV: Start, Jump

A/G
NGS:
0.123
C90:
0.000
PIE1-2

UniProt

c.637T>A p.Ser213Thr missense variant moderate contig1460 1194421

IGV: Start, Jump

A/T
NGS:
0.079
C90:
0.885

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.173 Pure Power Plant (RSP11265)
  2. 0.187 RKM-2018-017 (RSP11109)
  3. 0.189 RKM-2018-021 (RSP11113)
  4. 0.190 RKM-2018-032 (RSP11124)
  5. 0.191 GG4 (RSP12096)
  6. 0.199 GG#4 (RSP11461)
  7. 0.201 ILM (RSP12623)
  8. 0.202 The Gift (RSP10988)
  9. 0.202 Pai 60w (RSP11743)
  10. 0.205 Motor Breath #15 (RSP12093)
  11. 0.207 Tahoe OG (RSP11189)
  12. 0.208 RKM-2018-008 (RSP11099)
  13. 0.210 East Coast Sour Diesel (RSP10243)
  14. 0.213 RKM-2018-034 (RSP11126)
  15. 0.224 501st OG (RSP11241)
  16. 0.224 Peach Cresendo (RSP12483)
  17. 0.225 SFVxTK (RSP11072)
  18. 0.225 RKM-2018-004 (RSP11096)
  19. 0.225 Sour D (RSP11343)
  20. 0.226 Blueberry Cheesecake (RSP10684)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.192 RKM-2018-032 (RSP11124)
  2. 0.213 The Gift (RSP10988)
  3. 0.216 RKM-2018-034 (RSP11126)
  4. 0.227 Blueberry Cheesecake (RSP10684)
  5. 0.234 RKM-2018-004 (RSP11096)
  6. 0.239 Skywalker OG (RSP10837)
  7. 0.257 Kimbo Slice (RSP10997)
  8. 0.262 Pie Hoe (RSP11073)
  9. 0.266 RKM-2018-002 (RSP11093)
  10. 0.277 RKM-2018-033 (RSP11125)
  11. 0.283 Hermaphrodite Research Sample1 (RSP11049)
  12. 0.284 Blueberry Cheesecake (RSP10680)
  13. 0.285 RKM-2018-026 (RSP11118)
  14. 0.297 RKM-2018-009 (RSP11100)
  15. 0.300 Hermaphrodite ResearchSample2 (RSP11050)
  16. 0.303 RKM-2018-029 (RSP11121)
  17. 0.303 Golden Goat 2 (RSP10991)
  18. 0.304 Blue Dream (RSP11033)
  19. 0.308 Sour Raspberry (RSP10551)
  20. 0.310 RKM-2018-020 (RSP11112)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.450 Unknown--Cherry Wine---001- (RSP11268)
  2. 0.450 80E (RSP11213)
  3. 0.437 Cherry Blossom (RSP11314)
  4. 0.434 Tiger Tail -30- (RSP11484)
  5. 0.433 Unknown--Cherry Wine---002- (RSP11269)
  6. 0.433 JL 3rd Gen Father (RSP11196)
  7. 0.432 Northern Lights (RSP11501)
  8. 0.431 Unknown--Cherry Wine---004- (RSP11271)
  9. 0.429 Cherry (RSP11142)
  10. 0.428 Tanao Sri -46- (RSP11486)
  11. 0.427 80E (RSP11212)
  12. 0.427 80E (RSP11211)
  13. 0.424 Unknown--Cherry Wine---003- (RSP11270)
  14. 0.424 Cherry Blossom (RSP11300)
  15. 0.418 Brunswick High (RSP11164)
  16. 0.418 Cherry Blossom (RSP11311)
  17. 0.418 Cherry Blossom (RSP11328)
  18. 0.417 White Label 1 (RSP11336)
  19. 0.417 Northern Skunk (RSP11456)
  20. 0.416 Cherry Blossom (RSP11317)

Most genetically distant strains (Base Tree)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.440 Cherry (RSP11142)
  2. 0.416 Cbot-2019-005 (RSP11133)
  3. 0.411 JL yellow (RSP11075)
  4. 0.409 RKM-2018-022 (RSP11114)
  5. 0.399 Feral (RSP10890)
  6. 0.398 Monoica (RSP10241)
  7. 0.396 Carmagnola (RSP11037)
  8. 0.390 RKM-2018-006 (RSP11097)
  9. 0.390 Santhica27 (RSP11047)
  10. 0.385 RKM-2018-019 (RSP11111)
  11. 0.385 USO 31 (RSP10981)
  12. 0.383 Carmagnola (RSP10979)
  13. 0.380 Ivory (RSP10668)
  14. 0.379 Lovrin (RSP10658)
  15. 0.379 Cherry (RSP11143)
  16. 0.377 Futura 75 (RSP10664)
  17. 0.376 Recon (RSP10755)
  18. 0.376 RKM-2018-027 (RSP11119)
  19. 0.375 Kyrgyz Gold (RSP11054)
  20. 0.373 RKM-2018-023 (RSP11115)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4450110
Overlapping SNPs:
27
Concordance:
24

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495203
Overlapping SNPs:
5
Concordance:
5

Blockchain Registration Information

Transaction ID
ba72032f9e47998c597712b2b45395b26795b649498a6c9b66efa6bd369dcd77
SHASUM Hash
55d4f6d4bd1dd6539b911ea5d1eccf84305eb90b109e5e5595958acdfda292fd
QR code for RSP12100

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