Triangle Kush x Square Wave BX

RSP 12100

Grower: Collin Palmer

General Information

Accession Date
September 16, 2021
Reported Plant Sex
not reported

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.27%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0205
male female RSP12100

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
FAD2-2

UniProt

c.367G>T p.Gly123Cys missense variant moderate contig83 1803002

IGV: Start, Jump

C/A
NGS:
0.000
C90:
0.000
ELF3

UniProt

c.520A>C p.Asn174His missense variant moderate contig97 242226

IGV: Start, Jump

A/C
NGS:
0.094
C90:
0.502
ELF3

UniProt

c.812G>C p.Gly271Ala missense variant moderate contig97 242518

IGV: Start, Jump

G/C
NGS:
0.114
C90:
0.938
ELF3

UniProt

c.1630A>G p.Thr544Ala missense variant moderate contig97 244461

IGV: Start, Jump

A/G
NGS:
0.103
C90:
0.545
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.216A>T p.Lys72Asn missense variant moderate contig121 2828872

IGV: Start, Jump

A/T
NGS:
0.075
C90:
0.000
AAE1-2

UniProt

c.331A>G p.Asn111Asp missense variant moderate contig81 209293

IGV: Start, Jump

A/G
NGS:
0.123
C90:
0.000
PIE1-2

UniProt

c.637T>A p.Ser213Thr missense variant moderate contig1460 1194421

IGV: Start, Jump

A/T
NGS:
0.079
C90:
0.885

Nearest genetic relatives (All Samples)

0 0.033 0.067 0.100 0.133
clone distance sibling distance more distant
  1. 0.075 Electra (RSP11366)
  2. 0.085 SourD (RSP12092)
  3. 0.093 Serious Happiness (RSP10763)
  4. 0.095 Blueberry Cheesecake (RSP10684)
  5. 0.096 B52 (SRR14708255)
  6. 0.096 Lift (RSP11378)
  7. 0.101 Doug s Varin (RSP11243)
  8. 0.107 Trump x Trump (RSP11466)
  9. 0.107 Durban Poison 1 (RSP11013)
  10. 0.120 Pai 60w (RSP11743)
  11. 0.120 Domnesia (RSP11184)
  12. 0.121 Northern Light (SRR14708265)
  13. 0.123 VIR 469 (SRR14708242)
  14. 0.123 GG 4 (RSP11461)
  15. 0.125 Alpine Rocket (SRR14708266)
  16. 0.127 GG4 (RSP12096)
  17. 0.127 RKM-2018-032 (RSP11124)
  18. 0.128 R1in136 (SRR14708237)
  19. 0.128 RKM-2018-021 (RSP11113)
  20. 0.128 RKM-2018-017 (RSP11109)

Nearest genetic relatives (Base Tree)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.099 Blueberry Cheesecake (RSP10684)
  2. 0.129 RKM-2018-032 (RSP11124)
  3. 0.148 The Gift (RSP10988)
  4. 0.151 Liberty Haze (RSP11000)
  5. 0.181 Durban Poison (RSP11014)
  6. 0.203 RKM-2018-020 (RSP11112)
  7. 0.204 Hermaphrodite Research Sample1 (RSP11049)
  8. 0.210 RKM-2018-034 (RSP11126)
  9. 0.211 Gold Cracker (RSP11048)
  10. 0.212 RKM-2018-005 (RSP11096)
  11. 0.212 RKM-2018-033 (RSP11125)
  12. 0.218 Kimbo Slice (RSP10997)
  13. 0.222 Pie Hoe (RSP11073)
  14. 0.225 RKM-2018-029 (RSP11121)
  15. 0.233 QUEEN JESUS (RSP10105)
  16. 0.233 RKM-2018-027 (RSP11119)
  17. 0.237 Golden Goat 2 (RSP10991)
  18. 0.238 Blueberry Cheesecake (RSP10680)
  19. 0.240 UP Sunrise (RSP10989)
  20. 0.245 RKM-2018-003 (RSP11094)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.452 80E (RSP11213)
  2. 0.424 80E (RSP11211)
  3. 0.414 80E (RSP11212)
  4. 0.402 JL yellow (RSP11075)
  5. 0.382 Feral (RSP10891)
  6. 0.380 Unknown- Cherry Wine - 001 (RSP11268)
  7. 0.380 JL 3rd Gen Mother (RSP11214)
  8. 0.379 JL 3rd Gen Father (RSP11196)
  9. 0.378 Tiger Tail 30 (RSP11484)
  10. 0.369 Northern Lights (RSP11501)
  11. 0.368 Feral (RSP11206)
  12. 0.368 Tanao Sri-white 80 (RSP11621)
  13. 0.368 Feral (RSP10890)
  14. 0.367 White Label 1 (RSP11336)
  15. 0.361 Monoica (RSP10241)
  16. 0.360 Tanao Sri 46 (RSP11486)
  17. 0.360 Feral (RSP11205)
  18. 0.358 Santhica27 (RSP11046)
  19. 0.357 JL 4th Gen 6 (RSP11200)
  20. 0.356 JL 3rd Gen Mother (RSP11197)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.404 JL yellow (RSP11075)
  2. 0.377 Monoica (RSP10241)
  3. 0.373 Feral (RSP10890)
  4. 0.367 Ivory (RSP10668)
  5. 0.363 Carmagnola (RSP11037)
  6. 0.358 Lovrin (RSP10658)
  7. 0.352 Cbot-2019-005 (RSP11133)
  8. 0.347 Santhica27 (RSP11047)
  9. 0.343 Futura 75 (RSP10664)
  10. 0.341 Carmagnola (RSP10979)
  11. 0.333 Tisza (RSP10659)
  12. 0.329 USO 31 (RSP10981)
  13. 0.328 Cherry (RSP11142)
  14. 0.324 Kyrgyz Gold (RSP11054)
  15. 0.324 RKM-2018-022 (RSP11114)
  16. 0.321 Fedora 17 (RSP10661)
  17. 0.321 Tisza (RSP11044)
  18. 0.318 Kush Hemp E1 (RSP11128)
  19. 0.317 RKM-2018-019 (RSP11111)
  20. 0.313 Black Beauty (RSP11035)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4450110
Overlapping SNPs:
27
Concordance:
24

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495203
Overlapping SNPs:
5
Concordance:
5

Blockchain Registration Information

Transaction ID
ba72032f9e47998c597712b2b45395b26795b649498a6c9b66efa6bd369dcd77
SHASUM Hash
55d4f6d4bd1dd6539b911ea5d1eccf84305eb90b109e5e5595958acdfda292fd
QR code for RSP12100

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