Lime OG
RSP 12101
Grower: Happy Valley
Summary
Lime OG (RSP12101/Happy Valley) is a genetic Type I plant and its genetics appear uncommon. The sample's closest relative in the database is B52 (SRR14708255/Lanzhou University, Guangpeng Ren) and it is a potential sibling. The heterozygosity rate is 1.13% which is higher than average (74.0 percentile).
General Information
- Accession Date
- October 21, 2021
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v3 10Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
PHL-2 | c.932T>C | p.Leu311Pro | missense variant | moderate | contig2621 | 340210 | T/C | |
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.1540A>G | p.Thr514Ala | missense variant | moderate | contig2621 | 340818 | A/G | |
PHL-2 | c.2564T>A | p.Phe855Tyr | missense variant | moderate | contig2621 | 342607 | T/A | |
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PHL-2 | c.2624C>T | p.Ser875Phe | missense variant | moderate | contig2621 | 342667 | C/T | |
PHL-2 | c.2756A>C | p.Glu919Ala | missense variant | moderate | contig2621 | 342799 | A/C | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.2830A>C | p.Asn944His | missense variant | moderate | contig2621 | 342873 | A/C |
|
PHL-2 | c.2933G>T | p.Arg978Leu | missense variant | moderate | contig2621 | 342976 | G/T | |
PHL-2 | c.2936T>G | p.Val979Gly | missense variant | moderate | contig2621 | 342979 | T/G |
|
PHL-2 | c.3002A>G | p.Tyr1001Cys | missense variant | moderate | contig2621 | 343045 | A/G | |
PHL-2 | c.3027G>T | p.Lys1009Asn | missense variant | moderate | contig2621 | 343070 | G/T | |
PHL-2 | c.3033T>G | p.Cys1011Trp | missense variant | moderate | contig2621 | 343076 | T/G | |
PHL-2 | c.3202A>C | p.Thr1068Pro | missense variant | moderate | contig2621 | 343245 | A/C |
|
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PHL-2 | c.3467A>G | p.Gln1156Arg | missense variant | moderate | contig2621 | 343510 | A/G | |
PKSG-2a | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1944616 | C/T |
|
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
DXR-2 | c.431C>G | p.Ala144Gly | missense variant | moderate | contig380 | 287760 | G/C | |
OAC-2 | c.260C>G | p.Ser87Cys | missense variant | moderate | contig931 | 109979 | G/C |
|
FAD2-2 | c.196T>C | p.Phe66Leu | missense variant | moderate | contig83 | 1803173 | A/G |
|
FAD2-2 | c.172G>T | p.Asp58Tyr | missense variant | moderate | contig83 | 1803197 | C/A |
|
FAD2-2 | c.164A>G | p.His55Arg | missense variant | moderate | contig83 | 1803205 | T/C |
|
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
FAD2-2 | c.64G>T | p.Ala22Ser | missense variant | moderate | contig83 | 1803305 | C/A |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 |
c.1230-2_123 |
splice acceptor variant & intron variant | high | contig97 | 243676 | TAG/T | ||
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 |
c.1803_1805d |
p.His601del | disruptive inframe deletion | moderate | contig97 | 244625 | ACAT/A |
|
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.2141C>G | p.Pro714Arg | missense variant | moderate | contig97 | 244972 | C/G | |
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 | c.35G>A | p.Cys12Tyr | missense variant | moderate | contig1891 | 889357 | C/T | |
PIE1-2 | c.6773T>C | p.Leu2258Ser | missense variant | moderate | contig1460 | 1184314 | A/G | |
PIE1-2 | c.6636T>G | p.Asp2212Glu | missense variant | moderate | contig1460 | 1184451 | A/C | |
PIE1-2 | c.6623C>T | p.Ala2208Val | missense variant | moderate | contig1460 | 1184464 | G/A | |
PIE1-2 | c.6055C>T | p.Leu2019Phe | missense variant | moderate | contig1460 | 1185429 | G/A | |
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
PIE1-2 | c.1289A>G | p.Asp430Gly | missense variant | moderate | contig1460 | 1192109 | T/C |
|
PIE1-2 | c.710C>T | p.Pro237Leu | missense variant | moderate | contig1460 | 1193804 | G/A | |
PIE1-2 | c.706T>C | p.Tyr236His | missense variant | moderate | contig1460 | 1193808 | A/G | |
PIE1-2 | c.637T>A | p.Ser213Thr | missense variant | moderate | contig1460 | 1194421 | A/T | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
FT | c.240C>G | p.Asn80Lys | missense variant | moderate | contig1561 | 3124664 | C/G |
|
FLD | c.2981T>C | p.Met994Thr | missense variant | moderate | contig1450 | 2044012 | A/G | |
FLD | c.2964C>A | p.Asp988Glu | missense variant | moderate | contig1450 | 2044029 | G/T | |
FLD | c.2929T>C | p.Phe977Leu | missense variant | moderate | contig1450 | 2044103 | A/G | |
FLD | c.2686G>A | p.Ala896Thr | missense variant | moderate | contig1450 | 2044848 | C/T | |
FLD | c.2681T>C | p.Ile894Thr | missense variant | moderate | contig1450 | 2044853 | A/G | |
FLD | c.125G>A | p.Ser42Asn | missense variant | moderate | contig1450 | 2047909 | C/T | |
PIE1-1 | c.100G>A | p.Glu34Lys | missense variant | moderate | contig1225 | 2277786 | G/A | |
PIE1-1 | c.1222C>G | p.Gln408Glu | missense variant | moderate | contig1225 | 2281482 | C/G | |
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
Nearest genetic relatives (All Samples)
- 0.135 B52 (SRR14708255)
- 0.150 Super Lemon Haze (RSP11641)
- 0.160 PP9 (SRR14708260)
- 0.160 Domnesia (RSP11184)
- 0.168 Sour D (RSP11343)
- 0.170 Serious Happiness (RSP10763)
- 0.170 PCL1 (SRR14708246)
- 0.172 Electra (RSP11366)
- 0.172 Blueberry Cheesecake (RSP10684)
- 0.173 Doug s Varin (RSP11243)
- 0.175 Lift (RSP11378)
- 0.176 VIR 469 (SRR14708242)
- 0.176 Triangle Kush x Square Wave BX (RSP12100)
- 0.178 Alpine Rocket (SRR14708266)
- 0.179 UnObtanium (RSP11611)
- 0.180 BLACK JACK (RSP11346)
- 0.182 Trump x Trump (RSP11466)
- 0.183 East Coast Sour Diesel (RSP10243)
- 0.183 Suver Haze (RSP11364)
- 0.185 New York City Deisel (RSP11225)
Nearest genetic relatives (Base Tree)
- 0.178 Blueberry Cheesecake (RSP10684)
- 0.212 Gold Cracker (RSP11048)
- 0.225 RKM-2018-005 (RSP11096)
- 0.228 Liberty Haze (RSP11000)
- 0.233 RKM-2018-032 (RSP11124)
- 0.234 Durban Poison (RSP11014)
- 0.241 RKM-2018-033 (RSP11125)
- 0.241 Golden Goat 2 (RSP10991)
- 0.245 UP Sunrise (RSP10989)
- 0.246 RKM-2018-027 (RSP11119)
- 0.249 RKM-2018-020 (RSP11112)
- 0.265 Blue Dream (RSP11033)
- 0.270 RKM-2018-009 (RSP11100)
- 0.276 RKM-2018-003 (RSP11094)
- 0.277 Pie Hoe (RSP11073)
- 0.279 RKM-2018-031 (RSP11123)
- 0.281 QUEEN JESUS (RSP10105)
- 0.281 Blueberry Cheesecake (RSP10672)
- 0.281 Blueberry Cheesecake (RSP10680)
- 0.282 Cbot-2019-004 (RSP11132)
Most genetically distant strains (All Samples)
- 0.450 Cherry Blossom (RSP11323)
- 0.446 JL yellow (RSP11075)
- 0.439 JL 3rd Gen Father (RSP11196)
- 0.438 80E (RSP11213)
- 0.424 JL 3rd Gen Mother (RSP11214)
- 0.421 Feral (RSP11205)
- 0.418 80E (RSP11211)
- 0.415 Cherry Blossom (RSP11328)
- 0.415 Feral (RSP10891)
- 0.414 Feral (RSP10890)
- 0.412 R4 (RSP11617)
- 0.412 Diana (RSP10235)
- 0.409 Ivory (RSP10668)
- 0.408 80E (RSP11212)
- 0.408 Santhica27 (RSP11046)
- 0.408 Tanao Sri 46 (RSP11486)
- 0.407 CS (RSP11208)
- 0.405 Tanao Sri-white 80 (RSP11621)
- 0.404 Monoica (RSP10241)
- 0.403 USO 31 (RSP10983)
Most genetically distant strains (Base Tree)
- 0.449 JL yellow (RSP11075)
- 0.417 Feral (RSP10890)
- 0.410 Ivory (RSP10668)
- 0.410 Monoica (RSP10241)
- 0.405 Kush Hemp E1 (RSP11128)
- 0.400 Santhica27 (RSP11047)
- 0.393 Futura 75 (RSP10664)
- 0.393 Carmagnola (RSP11037)
- 0.390 Carmagnola (RSP10979)
- 0.383 Tisza (RSP11044)
- 0.379 RKM-2018-022 (RSP11114)
- 0.379 Lovrin (RSP10658)
- 0.375 Fedora 17 (RSP10661)
- 0.374 USO 31 (RSP10981)
- 0.373 Cbot-2019-001 (RSP11129)
- 0.373 Cbot-2019-005 (RSP11133)
- 0.370 Kyrgyz Gold (RSP11054)
- 0.368 RKM-2018-006 (RSP11097)
- 0.361 Cherry (RSP11142)
- 0.345 KYRG-11 (RSP11051)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 57
- Concordance:
- 40
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 8
- Concordance:
- 8
Blockchain Registration Information
- Transaction ID
-
95f451ab09bdd61d
8485ea0518e7f3c4 dd2ae9bf7e77a523 cc332b7ec48e0d78 - Stamping Certificate
- Download PDF (39.5 KB)
- SHASUM Hash
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cfaaee7b5da8442a
e27a412a311e9da7 33b6a2f09c47ea0c 0d2219db1e070a3f