Mandarin Cookies
RSP 12102
Grower: Happy Valley
Summary
Mandarin Cookies (RSP12102/Happy Valley) is a genetic Type II plant and its genetics appear rare. The sample's closest relative in the database is Durban Poison #1 (RSP11013/DigiPath Labs) and it is a potential cousin. The heterozygosity rate is 0.51% which is average (39.7 percentile).
General Information
- Accession Date
- October 21, 2021
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v3 10Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type II
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
CBDAS | c.224C>T | p.Ser75Phe | missense variant | moderate | contig1772 | 2082450 | C/T |
|
CBDAS | c.242C>T | p.Pro81Leu | missense variant | moderate | contig1772 | 2082468 | C/T |
|
CBDAS | c.245T>A | p.Leu82His | missense variant | moderate | contig1772 | 2082471 | T/A |
|
CBDAS | c.323G>A | p.Arg108Gln | missense variant | moderate | contig1772 | 2082549 | G/A |
|
CBDAS | c.329G>A | p.Arg110Gln | missense variant | moderate | contig1772 | 2082555 | G/A |
|
CBDAS | c.347C>A | p.Ser116Tyr | missense variant | moderate | contig1772 | 2082573 | C/A | |
CBDAS | c.407G>A | p.Arg136His | missense variant | moderate | contig1772 | 2082633 | G/A | |
CBDAS | c.437C>T | p.Thr146Ile | missense variant | moderate | contig1772 | 2082663 | C/T |
|
CBDAS | c.442T>A | p.Trp148Arg | missense variant | moderate | contig1772 | 2082668 | T/A |
|
THCAS | c.1625C>T | p.Pro542Leu | missense variant | moderate | contig741 | 4416203 | G/A |
|
THCAS | c.998C>G | p.Pro333Arg | missense variant | moderate | contig741 | 4416830 | G/C |
|
THCAS | c.187A>C | p.Ile63Leu | missense variant | moderate | contig741 | 4417641 | T/G |
Variants (Select Genes of Interest)
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
PHL-2 | c.932T>C | p.Leu311Pro | missense variant | moderate | contig2621 | 340210 | T/C | |
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.2564T>A | p.Phe855Tyr | missense variant | moderate | contig2621 | 342607 | T/A | |
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PHL-2 | c.2624C>T | p.Ser875Phe | missense variant | moderate | contig2621 | 342667 | C/T | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.2830A>C | p.Asn944His | missense variant | moderate | contig2621 | 342873 | A/C |
|
PHL-2 | c.2933G>T | p.Arg978Leu | missense variant | moderate | contig2621 | 342976 | G/T | |
PHL-2 | c.2936T>G | p.Val979Gly | missense variant | moderate | contig2621 | 342979 | T/G |
|
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PHL-2 | c.3467A>G | p.Gln1156Arg | missense variant | moderate | contig2621 | 343510 | A/G | |
PKSG-4a | c.967G>C | p.Asp323His | missense variant | moderate | contig700 | 1938378 | G/C |
|
PKSG-2a | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1944442 | A/C |
|
PKSG-2a | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1944445 | A/C |
|
PKSG-2a | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1944446 | C/T |
|
PKSG-2a | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1944616 | C/T |
|
PKSG-2a | c.718T>A | p.Phe240Ile | missense variant | moderate | contig700 | 1944672 | A/T |
|
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.718T>A | p.Phe240Ile | missense variant | moderate | contig700 | 1950920 | A/T |
|
PKSG-2b | c.592A>G | p.Asn198Asp | missense variant | moderate | contig700 | 1951046 | T/C |
|
PKSG-2b | c.560C>T | p.Thr187Met | missense variant | moderate | contig700 | 1951078 | G/A |
|
PKSG-2b | c.558G>A | p.Met186Ile | missense variant | moderate | contig700 | 1951080 | C/T |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
OAC-1 | c.260C>G | p.Ser87Cys | missense variant | moderate | contig931 | 118104 | G/C |
|
OAC-1 | c.220A>G | p.Ile74Val | missense variant | moderate | contig931 | 118144 | T/C | |
OAC-1 | c.213C>A | p.Asp71Glu | missense variant | moderate | contig931 | 118151 | G/T |
|
OAC-1 | c.185C>T | p.Thr62Ile | missense variant | moderate | contig931 | 118179 | G/A |
|
FAD2-2 | c.172G>T | p.Asp58Tyr | missense variant | moderate | contig83 | 1803197 | C/A |
|
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 | c.752G>T | p.Gly251Val | missense variant | moderate | contig97 | 242458 | G/T | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 |
c.1230-2_123 |
splice acceptor variant & intron variant | high | contig97 | 243676 | TAG/T | ||
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 |
c.1803_1805d |
p.His601del | disruptive inframe deletion | moderate | contig97 | 244625 | ACAT/A |
|
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.2141C>G | p.Pro714Arg | missense variant | moderate | contig97 | 244972 | C/G | |
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
ELF5 | c.1487T>C | p.Val496Ala | missense variant | moderate | contig382 | 881925 | T/C |
|
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
PHL-1 | c.407G>A | p.Arg136Gln | missense variant | moderate | contig1439 | 1491441 | C/T | |
PHL-1 | c.176G>A | p.Gly59Glu | missense variant | moderate | contig1439 | 1492817 | C/T |
|
PHL-1 | c.175G>A | p.Gly59Arg | missense variant | moderate | contig1439 | 1492818 | C/T | |
Edestin |
c.130_131ins |
p.Gly43_Ser4 |
conservative inframe insertion | moderate | contig850 | 3065159 | G/GAAT |
|
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1381G>A | p.Asp461Asn | missense variant | moderate | contig1891 | 886367 | C/T |
|
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 | c.35G>A | p.Cys12Tyr | missense variant | moderate | contig1891 | 889357 | C/T | |
PIE1-2 | c.6773T>C | p.Leu2258Ser | missense variant | moderate | contig1460 | 1184314 | A/G | |
PIE1-2 | c.6653A>G | p.Asn2218Ser | missense variant | moderate | contig1460 | 1184434 | T/C | |
PIE1-2 | c.6307A>C | p.Lys2103Gln | missense variant | moderate | contig1460 | 1185177 | T/G | |
PIE1-2 | c.6149G>A | p.Arg2050Lys | missense variant | moderate | contig1460 | 1185335 | C/T | |
PIE1-2 | c.6067C>T | p.Arg2023Cys | missense variant | moderate | contig1460 | 1185417 | G/A | |
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.5132T>C | p.Ile1711Thr | missense variant | moderate | contig1460 | 1186607 | A/G |
|
PIE1-2 | c.3604A>G | p.Thr1202Ala | missense variant | moderate | contig1460 | 1188436 | T/C |
|
PIE1-2 | c.3512A>G | p.Lys1171Arg | missense variant | moderate | contig1460 | 1188528 | T/C | |
PIE1-2 | c.2188G>A | p.Ala730Thr | missense variant | moderate | contig1460 | 1189852 | C/T | |
PIE1-2 |
c.2083_2085d |
p.Val695del | conservative inframe deletion | moderate | contig1460 | 1189954 | GGAC/G | |
PIE1-2 | c.2072A>G | p.His691Arg | missense variant | moderate | contig1460 | 1189968 | T/C | |
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
PIE1-2 | c.1630G>C | p.Ala544Pro | missense variant | moderate | contig1460 | 1191600 | C/G | |
PIE1-2 | c.1289A>G | p.Asp430Gly | missense variant | moderate | contig1460 | 1192109 | T/C |
|
PIE1-2 | c.1156T>G | p.Trp386Gly | missense variant | moderate | contig1460 | 1192242 | A/C | |
PIE1-2 | c.1117C>G | p.Gln373Glu | missense variant | moderate | contig1460 | 1192281 | G/C | |
PIE1-2 | c.1093G>A | p.Gly365Ser | missense variant | moderate | contig1460 | 1192305 | C/T | |
PIE1-2 | c.982G>A | p.Glu328Lys | missense variant | moderate | contig1460 | 1192416 | C/T | |
PIE1-2 | c.710C>T | p.Pro237Leu | missense variant | moderate | contig1460 | 1193804 | G/A | |
PIE1-2 | c.706T>C | p.Tyr236His | missense variant | moderate | contig1460 | 1193808 | A/G | |
PIE1-2 | c.637T>A | p.Ser213Thr | missense variant | moderate | contig1460 | 1194421 | A/T | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
FT |
c.32_43dupAT |
p.Asn11_Asn1 |
disruptive inframe insertion | moderate | contig1561 | 3124441 |
T/TTAATAATAA |
|
FLD | c.2981T>C | p.Met994Thr | missense variant | moderate | contig1450 | 2044012 | A/G | |
FLD | c.2964C>A | p.Asp988Glu | missense variant | moderate | contig1450 | 2044029 | G/T | |
FLD | c.2929T>C | p.Phe977Leu | missense variant | moderate | contig1450 | 2044103 | A/G | |
FLD | c.2686G>A | p.Ala896Thr | missense variant | moderate | contig1450 | 2044848 | C/T | |
FLD | c.2681T>C | p.Ile894Thr | missense variant | moderate | contig1450 | 2044853 | A/G | |
FLD | c.2549C>T | p.Thr850Ile | missense variant & splice region variant | moderate | contig1450 | 2045191 | G/A |
|
FLD | c.125G>A | p.Ser42Asn | missense variant | moderate | contig1450 | 2047909 | C/T | |
PIE1-1 | c.773A>G | p.Asn258Ser | missense variant & splice region variant | moderate | contig1225 | 2279897 | A/G | |
PIE1-1 | c.811T>C | p.Tyr271His | missense variant | moderate | contig1225 | 2279935 | T/C | |
PIE1-1 | c.815C>T | p.Pro272Leu | missense variant | moderate | contig1225 | 2279939 | C/T | |
PIE1-1 | c.1222C>G | p.Gln408Glu | missense variant | moderate | contig1225 | 2281482 | C/G | |
PIE1-1 | c.1394A>G | p.Asp465Gly | missense variant | moderate | contig1225 | 2281654 | A/G | |
PIE1-1 | c.1454T>C | p.Val485Ala | missense variant | moderate | contig1225 | 2281714 | T/C |
|
PIE1-1 |
c.1548_1549i |
p.Gln516_Glu |
conservative inframe insertion | moderate | contig1225 | 2281807 | A/AGAT | |
PIE1-1 | c.2174A>G | p.His725Arg | missense variant | moderate | contig1225 | 2283789 | A/G |
|
PIE1-1 |
c.2185_2187d |
p.Val729del | conservative inframe deletion | moderate | contig1225 | 2283796 | AGTC/A |
|
PIE1-1 | c.3614A>G | p.Lys1205Arg | missense variant | moderate | contig1225 | 2285229 | A/G | |
PIE1-1 | c.3619G>A | p.Val1207Met | missense variant | moderate | contig1225 | 2285234 | G/A |
|
PIE1-1 | c.3706A>G | p.Thr1236Ala | missense variant | moderate | contig1225 | 2285321 | A/G |
|
PIE1-1 | c.6725C>T | p.Ala2242Val | missense variant | moderate | contig1225 | 2289290 | C/T | |
PIE1-1 | c.6875T>C | p.Leu2292Ser | missense variant | moderate | contig1225 | 2289440 | T/C | |
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
Nearest genetic relatives (All Samples)
- 0.219 Durban Poison 1 (RSP11013)
- 0.234 Domnesia (RSP11184)
- 0.237 Electra (RSP11366)
- 0.237 PCL1 (SRR14708246)
- 0.238 Cherry Gar-See-Ya (RSP11642)
- 0.243 Lifter (RSP11365)
- 0.246 Durban Poison 1 (RSP10996)
- 0.252 Hermaphrodite ResearchSample2 (RSP11050)
- 0.254 CST (RSP11002)
- 0.255 JL 4th Gen 7 (RSP11153)
- 0.255 B52 (SRR14708255)
- 0.256 Sour Tsunami (RSP11187)
- 0.258 TropCookies (RSP12097)
- 0.262 Durban Poison (RSP11226)
- 0.264 JL Cross 25 (RSP11526)
- 0.266 Durban Poison (RSP11014)
- 0.268 Durban Poison (RSP10998)
- 0.269 Doug s Varin (RSP11243)
- 0.270 Serious Happiness (RSP10763)
- 0.272 UnObtanium (RSP11611)
Nearest genetic relatives (Base Tree)
- 0.245 Hermaphrodite ResearchSample2 (RSP11050)
- 0.259 CST (RSP11002)
- 0.261 Durban Poison (RSP11014)
- 0.266 Liberty Haze (RSP11000)
- 0.277 Blueberry Cheesecake (RSP10684)
- 0.288 Gold Cracker (RSP11048)
- 0.303 Cbot-2019-006 (RSP11134)
- 0.307 Cbot-2019-004 (RSP11132)
- 0.311 RKM-2018-023 (RSP11115)
- 0.315 RKM-2018-006 (RSP11097)
- 0.320 RKM-2018-009 (RSP11100)
- 0.321 Recon (RSP10755)
- 0.325 Black Beauty (RSP11035)
- 0.327 RKM-2018-027 (RSP11119)
- 0.327 Blueberry Cheesecake (RSP10680)
- 0.330 Hermaphrodite Research Sample1 (RSP11049)
- 0.334 RKM-2018-003 (RSP11094)
- 0.335 RKM-2018-031 (RSP11123)
- 0.337 RKM-2018-028 (RSP11120)
- 0.337 RKM-2018-020 (RSP11112)
Most genetically distant strains (All Samples)
- 0.469 Tanao Sri-white-T1 (RSP11658)
- 0.468 Squirrel Tail 81 (RSP11622)
- 0.465 80E (RSP11213)
- 0.457 Delta-llosa (SRR14708272)
- 0.455 Tanao Sri-white 80 (RSP11621)
- 0.454 CS (RSP11208)
- 0.452 80E (RSP11211)
- 0.450 XGL1 (SRR14708209)
- 0.448 Cherry Blossom (RSP11318)
- 0.445 Deadhead OG (RSP11463)
- 0.445 Chem 91 (RSP11185)
- 0.443 GG4 (RSP11978)
- 0.441 AVIDEKEL 2 0 (RSP11174)
- 0.441 Tiger Tail 78 (RSP11619)
- 0.441 UP Wendigo (RSP11261)
- 0.436 Tanao Sri 46 (RSP11486)
- 0.436 R1in136 (SRR14708225)
- 0.436 Right Mark (RSP11628)
- 0.435 Northern Skunk (RSP11456)
- 0.435 Tanao Sri-white 79 (RSP11620)
Most genetically distant strains (Base Tree)
- 0.423 Skywalker OG (RSP10837)
- 0.422 RKM-2018-026 (RSP11118)
- 0.413 Carmagnola (RSP11037)
- 0.411 Feral (RSP10890)
- 0.408 RKM-2018-034 (RSP11126)
- 0.403 Cbot-2019-005 (RSP11133)
- 0.400 USO 31 (RSP10981)
- 0.397 Ivory (RSP10668)
- 0.394 RKM-2018-005 (RSP11096)
- 0.393 Golden Goat 2 (RSP10991)
- 0.392 JL yellow (RSP11075)
- 0.391 Blue Dream (RSP11033)
- 0.390 Fedora 17 (RSP10661)
- 0.390 The Gift (RSP10988)
- 0.389 Santhica27 (RSP11047)
- 0.385 RKM-2018-002 (RSP11093)
- 0.384 RKM-2018-018 (RSP11110)
- 0.380 KYRG-11 (RSP11051)
- 0.379 RKM-2018-019 (RSP11111)
- 0.378 Tisza (RSP10659)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 32
- Concordance:
- 22
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 5
- Concordance:
- 5
Blockchain Registration Information
- Transaction ID
-
560d41360b52c67c
1f33e9d5f057d503 b0dcfa93218f8e35 82d0a6768ce993bf - Stamping Certificate
- Download PDF (39.7 KB)
- SHASUM Hash
-
034ff766bc5c7442
a6bd588d6424156c ba44ff940455858f ef6dde2c1e82ca2a