Cherry Lime Runtz

RSP 12486

Grower: Garden Remedies

General Information

Sample Name
Cherry Lime Runtz #4
Accession Date
November 18, 2021
Reported Plant Sex
Male

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.75%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0614
male female RSP12486

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PHL-2 c.455A>C p.Asp152Ala missense variant moderate contig2621 339191

IGV: Start, Jump

A/C
NGS:
0.018
C90:
0.507
PHL-2 c.2564T>A p.Phe855Tyr missense variant moderate contig2621 342607

IGV: Start, Jump

T/A
NGS:
0.064
C90:
0.732
PHL-2 c.2578T>A p.Leu860Ile missense variant moderate contig2621 342621

IGV: Start, Jump

T/A
NGS:
0.068
C90:
0.746
PHL-2 c.3209A>G p.Gln1070Arg missense variant moderate contig2621 343252

IGV: Start, Jump

A/G
NGS:
0.103
C90:
0.885
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
FAD2-2

UniProt

c.190C>T p.His64Tyr missense variant moderate contig83 1803179

IGV: Start, Jump

G/A
NGS:
0.013
C90:
0.000
FAD2-2

UniProt

c.172G>T p.Asp58Tyr missense variant moderate contig83 1803197

IGV: Start, Jump

C/A
NGS:
0.070
C90:
0.000
FAD2-2

UniProt

c.161T>A p.Leu54His missense variant moderate contig83 1803208

IGV: Start, Jump

A/T
NGS:
0.156
C90:
0.000
FAD2-2

UniProt

c.154G>A p.Val52Ile missense variant moderate contig83 1803215

IGV: Start, Jump

C/T
NGS:
0.022
C90:
0.000
FAD2-2

UniProt

c.62C>T p.Pro21Leu missense variant moderate contig83 1803307

IGV: Start, Jump

G/A
NGS:
0.042
C90:
0.000
FAD2-2

UniProt

c.23G>A p.Ser8Asn missense variant moderate contig83 1803346

IGV: Start, Jump

C/T
NGS:
0.009
C90:
0.000
ELF3

UniProt

c.574A>G p.Asn192Asp missense variant moderate contig97 242280

IGV: Start, Jump

A/G
NGS:
0.042
C90:
0.579
ELF3

UniProt

c.1466G>A p.Ser489Asn missense variant moderate contig97 244297

IGV: Start, Jump

G/A
NGS:
0.123
C90:
0.000
ELF3

UniProt

c.1473A>C p.Lys491Asn missense variant moderate contig97 244304

IGV: Start, Jump

A/C
NGS:
0.002
C90:
0.000
ELF3

UniProt

c.1552G>A p.Gly518Arg missense variant moderate contig97 244383

IGV: Start, Jump

G/A
NGS:
0.000
C90:
0.000
ELF3

UniProt

c.1630A>G p.Thr544Ala missense variant moderate contig97 244461

IGV: Start, Jump

A/G
NGS:
0.103
C90:
0.545
ELF3

UniProt

c.1803_1805delTCA p.His601del disruptive inframe deletion moderate contig97 244625

IGV: Start, Jump

ACAT/A
NGS:
0.092
C90:
0.000
ELF3

UniProt

c.1807G>C p.Gly603Arg missense variant moderate contig97 244638

IGV: Start, Jump

G/C
NGS:
0.002
C90:
0.000
ELF3

UniProt

c.1966C>G p.Pro656Ala missense variant moderate contig97 244797

IGV: Start, Jump

C/G
NGS:
0.123
C90:
0.632
ELF3

UniProt

c.1982A>C p.Asn661Thr missense variant moderate contig97 244813

IGV: Start, Jump

A/C
NGS:
0.002
C90:
0.000
ELF3

UniProt

c.2141C>G p.Pro714Arg missense variant moderate contig97 244972

IGV: Start, Jump

C/G
NGS:
0.088
C90:
0.335
ELF3

UniProt

c.2198G>T p.Arg733Leu missense variant moderate contig97 245029

IGV: Start, Jump

G/T
NGS:
0.125
C90:
0.531
aPT4

UniProt

c.35A>C p.Gln12Pro missense variant moderate contig121 2828691

IGV: Start, Jump

A/C
NGS:
0.075
C90:
0.000
aPT4

UniProt

c.216A>T p.Lys72Asn missense variant moderate contig121 2828872

IGV: Start, Jump

A/T
NGS:
0.075
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
AAE1-2

UniProt

c.359delC p.Pro120fs frameshift variant high contig81 209319

IGV: Start, Jump

AC/A
NGS:
0.000
C90:
0.000
AAE1-2

UniProt

c.948_949insA p.Asp317fs frameshift variant high contig81 209910

IGV: Start, Jump

C/CA
NGS:
0.050
C90:
0.000
AAE1-2

UniProt

c.1006A>G p.Lys336Glu missense variant moderate contig81 209968

IGV: Start, Jump

A/G
NGS:
0.116
C90:
0.000
AAE1-2

UniProt

c.1415G>A p.Ser472Asn missense variant moderate contig81 210377

IGV: Start, Jump

G/A
NGS:
0.070
C90:
0.000
AAE1-2

UniProt

c.1417A>G p.Thr473Ala missense variant moderate contig81 210379

IGV: Start, Jump

A/G
NGS:
0.070
C90:
0.000
AAE1-2

UniProt

c.1434G>T p.Glu478Asp missense variant moderate contig81 210396

IGV: Start, Jump

G/T
NGS:
0.075
C90:
0.000
PHL-1

UniProt

c.1387A>G p.Thr463Ala missense variant moderate contig1439 1489811

IGV: Start, Jump

T/C
NGS:
0.107
C90:
0.904
HDS-1

UniProt

c.1618A>G p.Ile540Val missense variant moderate contig1891 885936

IGV: Start, Jump

T/C
NGS:
0.099
C90:
0.861
HDS-1

UniProt

c.56C>G p.Ala19Gly missense variant moderate contig1891 889336

IGV: Start, Jump

G/C
NGS:
0.125
C90:
0.943
HDS-1

UniProt

c.35G>A p.Cys12Tyr missense variant moderate contig1891 889357

IGV: Start, Jump

C/T
NGS:
0.094
C90:
0.646
PIE1-2

UniProt

c.1289A>G p.Asp430Gly missense variant moderate contig1460 1192109

IGV: Start, Jump

T/C
NGS:
0.079
C90:
0.000
FT

UniProt

c.240C>G p.Asn80Lys missense variant moderate contig1561 3124664

IGV: Start, Jump

C/G
NGS:
0.075
C90:
0.000
FLD

UniProt

c.1896_1900delTGGGG p.Gly633fs frameshift variant high contig1450 2045839

IGV: Start, Jump

GCCCCA/G
NGS:
0.000
C90:
0.000
AAE1-3

UniProt

c.722G>A p.Arg241Lys missense variant moderate contig976 1083132

IGV: Start, Jump

C/T
NGS:
0.070
C90:
0.000
AAE1-3

UniProt

c.659G>A p.Arg220Gln missense variant moderate contig976 1083195

IGV: Start, Jump

C/T
NGS:
0.077
C90:
0.000
AAE1-3

UniProt

c.199A>G p.Asn67Asp missense variant moderate contig976 1083876

IGV: Start, Jump

T/C
NGS:
0.079
C90:
0.000
AAE1-3

UniProt

c.188A>G p.Asn63Ser missense variant moderate contig976 1083887

IGV: Start, Jump

T/C
NGS:
0.077
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.033 0.067 0.100 0.133
clone distance sibling distance more distant
  1. 0.071 Triangle Kush x Square Wave BX (RSP12100)
  2. 0.073 East side OG (RSP12089)
  3. 0.073 Rest (RSP11377)
  4. 0.075 Juicy Gummy x Royal Kush (RSP12484)
  5. 0.078 XUM1 (SRR14708205)
  6. 0.080 VIR 493 - Glukhovskaja 10 Zheltostebel'naja (SRR14708230)
  7. 0.081 SourD (RSP12092)
  8. 0.082 Suver Haze (RSP11364)
  9. 0.086 Garlic (RSP11341)
  10. 0.089 JL Cross 22 (RSP11523)
  11. 0.089 Electra (RSP11366)
  12. 0.091 VIR 469 (SRR14708242)
  13. 0.091 Top 44 (SRR14708268)
  14. 0.093 UnObtanium (RSP11611)
  15. 0.093 Chamaeleon (SRR14708197)
  16. 0.093 Hawaii Maui Waui (SRR14708262)
  17. 0.095 Serious Happiness (RSP10763)
  18. 0.095 VIR 483 (SRR14708238)
  19. 0.096 Cream Sugar (RSP12487)
  20. 0.096 Lift (RSP11378)

Nearest genetic relatives (Base Tree)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.122 The Gift (RSP10988)
  2. 0.132 CST (RSP11002)
  3. 0.134 RKM-2018-026 (RSP11118)
  4. 0.136 Pie Hoe (RSP11073)
  5. 0.138 Liberty Haze (RSP11000)
  6. 0.146 Blueberry Cheesecake (RSP10680)
  7. 0.146 Hermaphrodite ResearchSample2 (RSP11050)
  8. 0.151 Blueberry Cheesecake (RSP10684)
  9. 0.165 RKM-2018-034 (RSP11126)
  10. 0.172 Golden Goat 2 (RSP10991)
  11. 0.179 Skywalker OG (RSP10837)
  12. 0.183 Tisza (RSP10659)
  13. 0.188 QUEEN JESUS (RSP10105)
  14. 0.188 RKM-2018-005 (RSP11096)
  15. 0.190 RKM-2018-020 (RSP11112)
  16. 0.192 Kimbo Slice (RSP10997)
  17. 0.194 Durban Poison (RSP11014)
  18. 0.196 RKM-2018-009 (RSP11100)
  19. 0.198 UP Sunrise (RSP10989)
  20. 0.204 Hermaphrodite Research Sample1 (RSP11049)

Most genetically distant strains (All Samples)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.367 JL 4th Gen 5 (RSP11199)
  2. 0.365 JL yellow (RSP11075)
  3. 0.342 80E (RSP11213)
  4. 0.339 IUP3 (SRR14708256)
  5. 0.333 JL 4th Gen 2 (RSP11194)
  6. 0.327 JL 4th Gen 1 (RSP11193)
  7. 0.326 Carmaleonte (RSP11207)
  8. 0.325 USO31 (RSP10233)
  9. 0.323 JL 3rd Gen Mother (RSP11214)
  10. 0.317 JL 3rd Gen Father (RSP11196)
  11. 0.313 Tiborszallasie (RSP11210)
  12. 0.308 JL 3rd Gen Mother (RSP11197)
  13. 0.304 VIR 507 - Krasnodarsky 10 FB (SRR14708229)
  14. 0.303 AVIDEKEL 2 0 (RSP11174)
  15. 0.301 80E (RSP11211)
  16. 0.301 Cherry Blossom (RSP11329)
  17. 0.299 Cherry Blossom (RSP11306)
  18. 0.297 Arcata Trainwreck (RSP11176)
  19. 0.292 Cherry Blossom (RSP11323)
  20. 0.291 Cherry Blossom (RSP11326)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.377 JL yellow (RSP11075)
  2. 0.302 RKM-2018-006 (RSP11097)
  3. 0.301 Cbot-2019-005 (RSP11133)
  4. 0.300 Black Beauty (RSP11035)
  5. 0.293 Kush Hemp E1 (RSP11128)
  6. 0.292 Cbot-2019-004 (RSP11132)
  7. 0.286 Tisza (RSP11044)
  8. 0.286 Lovrin (RSP10658)
  9. 0.278 Cherry (RSP11142)
  10. 0.278 RKM-2018-028 (RSP11120)
  11. 0.278 Monoica (RSP10241)
  12. 0.276 Cbot-2019-001 (RSP11129)
  13. 0.276 RKM-2018-031 (RSP11123)
  14. 0.275 RKM-2018-022 (RSP11114)
  15. 0.271 Cbot-2019-006 (RSP11134)
  16. 0.266 Ivory (RSP10668)
  17. 0.264 RKM-2018-018 (RSP11110)
  18. 0.262 Fedora 17 (RSP10661)
  19. 0.260 Feral (RSP10890)
  20. 0.259 KYRG-11 (RSP11051)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448315
Overlapping SNPs:
7
Concordance:
7

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495158
Overlapping SNPs:
1
Concordance:
1

Blockchain Registration Information

Transaction ID
4cbd9b50c385d71edaa920f05491f5269708bef02bb8b95e20eede3f05ba557e
Stamping Certificate
Download PDF (39.8 KB)
SHASUM Hash
53bcfee82749c087e8f124518885b0fce747472e4deb7014f75732df6ee1eff2
QR code for RSP12486

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