Cream & Sugar

RSP 12487

Grower: Garden Remedies

General Information

Sample Name
Cream & Sugar #5
Accession Date
November 18, 2021
Reported Plant Sex
Male

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.68%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0591
male female RSP12487

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PHL-2 c.3467A>G p.Gln1156Arg missense variant moderate contig2621 343510

IGV: Start, Jump

A/G
NGS:
0.064
C90:
0.713
FAD2-2

UniProt

c.64G>T p.Ala22Ser missense variant moderate contig83 1803305

IGV: Start, Jump

C/A
NGS:
0.048
C90:
0.000
ELF3

UniProt

c.1803_1805delTCA p.His601del disruptive inframe deletion moderate contig97 244625

IGV: Start, Jump

ACAT/A
NGS:
0.092
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000
HDS-1

UniProt

c.56C>G p.Ala19Gly missense variant moderate contig1891 889336

IGV: Start, Jump

G/C
NGS:
0.125
C90:
0.943

Nearest genetic relatives (All Samples)

0 0.033 0.067 0.100 0.133
clone distance sibling distance more distant
  1. 0.019 PP9 (SRR14708260)
  2. 0.024 R1in136 (SRR14708225)
  3. 0.025 Doug s Varin (RSP11243)
  4. 0.025 Badger (RSP11614)
  5. 0.027 Domnesia (RSP11184)
  6. 0.028 Serious Happiness (RSP10763)
  7. 0.028 VIR 483 (SRR14708238)
  8. 0.030 UnObtanium (RSP11611)
  9. 0.034 SourD (RSP12092)
  10. 0.035 Triangle Kush x Square Wave BX (RSP12100)
  11. 0.037 VIR 449 - Szegedi 9 (SRR14708213)
  12. 0.038 Suver Haze (RSP11364)
  13. 0.038 CBG- 40 (RSP11444)
  14. 0.038 Kompolti (SRR14708277)
  15. 0.039 Electra (RSP11366)
  16. 0.040 B52 (SRR14708255)
  17. 0.041 Blue Dream (RSP11010)
  18. 0.042 XHC1 (SRR14708212)
  19. 0.042 Hawaii Maui Waui (SRR14708262)
  20. 0.045 VIR 493 - Glukhovskaja 10 Zheltostebel'naja (SRR14708230)

Nearest genetic relatives (Base Tree)

0 0.042 0.083 0.125 0.167
clone distance sibling distance more distant
  1. 0.065 Blueberry Cheesecake (RSP10684)
  2. 0.081 The Gift (RSP10988)
  3. 0.083 Liberty Haze (RSP11000)
  4. 0.097 RKM-2018-009 (RSP11100)
  5. 0.098 Durban Poison (RSP11014)
  6. 0.105 Blueberry Cheesecake (RSP10680)
  7. 0.106 CST (RSP11002)
  8. 0.112 QUEEN JESUS (RSP10105)
  9. 0.114 RKM-2018-005 (RSP11096)
  10. 0.116 Golden Goat 2 (RSP10991)
  11. 0.125 Hermaphrodite ResearchSample2 (RSP11050)
  12. 0.127 RKM-2018-032 (RSP11124)
  13. 0.129 Pie Hoe (RSP11073)
  14. 0.131 Cbot-2019-006 (RSP11134)
  15. 0.134 RKM-2018-029 (RSP11121)
  16. 0.134 RKM-2018-033 (RSP11125)
  17. 0.135 Kimbo Slice (RSP10997)
  18. 0.140 UP Sunrise (RSP10989)
  19. 0.140 RKM-2018-020 (RSP11112)
  20. 0.143 Hermaphrodite Research Sample1 (RSP11049)

Most genetically distant strains (All Samples)

0 0.092 0.183 0.275 0.367
clone distance sibling distance more distant
  1. 0.340 JL 4th Gen 5 (RSP11199)
  2. 0.331 JL yellow (RSP11075)
  3. 0.327 JL 3rd Gen Father (RSP11196)
  4. 0.327 JL 4th Gen 2 (RSP11194)
  5. 0.304 80E (RSP11213)
  6. 0.302 JL 4th Gen 1 (RSP11193)
  7. 0.302 80E (RSP11211)
  8. 0.298 Carmaleonte (RSP11207)
  9. 0.296 JL 4th Gen 4 (RSP11198)
  10. 0.295 JL 3rd Gen Mother (RSP11214)
  11. 0.292 Carmagnola (RSP11202)
  12. 0.284 80E (RSP11212)
  13. 0.284 JL 4th Gen 6 (RSP11200)
  14. 0.275 Feral (RSP11205)
  15. 0.273 USO31 (RSP10233)
  16. 0.268 Tiborszallasie (RSP11210)
  17. 0.267 Carmagnola USO 31 (RSP11204)
  18. 0.267 Santhica27 (RSP11046)
  19. 0.265 Cherry Blossom (RSP11323)
  20. 0.259 IUP3 (SRR14708256)

Most genetically distant strains (Base Tree)

0 0.092 0.183 0.275 0.367
clone distance sibling distance more distant
  1. 0.344 JL yellow (RSP11075)
  2. 0.272 Lovrin (RSP10658)
  3. 0.254 Cbot-2019-005 (RSP11133)
  4. 0.245 Fedora 17 (RSP10661)
  5. 0.243 Monoica (RSP10241)
  6. 0.235 Black Beauty (RSP11035)
  7. 0.231 KYRG-11 (RSP11051)
  8. 0.231 Carmagnola (RSP11037)
  9. 0.230 Feral (RSP10890)
  10. 0.230 Tisza (RSP11044)
  11. 0.225 Kyrgyz Gold (RSP11054)
  12. 0.225 Ivory (RSP10668)
  13. 0.223 USO 31 (RSP10981)
  14. 0.220 Santhica27 (RSP11047)
  15. 0.218 Kush Hemp E1 (RSP11128)
  16. 0.217 Carmagnola (RSP10979)
  17. 0.216 Cherry (RSP11142)
  18. 0.208 Futura 75 (RSP10664)
  19. 0.200 RKM-2018-006 (RSP11097)
  20. 0.197 Cbot-2019-001 (RSP11129)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448266
Overlapping SNPs:
6
Concordance:
6

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495158
Overlapping SNPs:
1
Concordance:
1

Blockchain Registration Information

Transaction ID
74bf0429a7bf65baaf694430306c0ec15edde677e0e73915baead391ca487890
Stamping Certificate
Download PDF (39.5 KB)
SHASUM Hash
943bd87534ba076d2c498830ebc77237bb8d871652e6ca5772297129ffd29bb4
QR code for RSP12487

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