Cream & Sugar

RSP 12487

Grower: Garden Remedies

General Information

Sample Name
Cream & Sugar #5
Accession Date
November 18, 2021
Reported Plant Sex
Male

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.68%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0591
male female RSP12487

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PHL-2 c.3467A>G p.Gln1156Arg missense variant moderate contig2621 343510

IGV: Start, Jump

A/G
NGS:
0.064
C90:
0.713
FAD2-2

UniProt

c.64G>T p.Ala22Ser missense variant moderate contig83 1803305

IGV: Start, Jump

C/A
NGS:
0.048
C90:
0.000
ELF3

UniProt

c.1803_1805delTCA p.His601del disruptive inframe deletion moderate contig97 244625

IGV: Start, Jump

ACAT/A
NGS:
0.092
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000
HDS-1

UniProt

c.56C>G p.Ala19Gly missense variant moderate contig1891 889336

IGV: Start, Jump

G/C
NGS:
0.125
C90:
0.943

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.205 Skywalker OG (RSP10837)
  2. 0.207 SFVxTK (RSP11072)
  3. 0.208 501st OG (RSP11241)
  4. 0.211 RKM-2018-013 (RSP11104)
  5. 0.212 Deadhead OG (RSP11463)
  6. 0.214 Motor Breath #15 (RSP12093)
  7. 0.217 Rugburn OG (RSP11353)
  8. 0.217 Gorilla Cookies (RSP11231)
  9. 0.220 Absolute OG (RSP11455)
  10. 0.222 Mothers Milk #5 (RSP11186)
  11. 0.229 East side OG (RSP12089)
  12. 0.230 Pure Power Plant (RSP11265)
  13. 0.230 SourD (RSP12092)
  14. 0.230 RKM-2018-026 (RSP11118)
  15. 0.234 Bueller F3 (RSP12503)
  16. 0.235 Tahoe OG (RSP11189)
  17. 0.236 Mother s Milk No 31 (RSP11623)
  18. 0.237 RKM-2018-017 (RSP11109)
  19. 0.237 RKM-2018-021 (RSP11113)
  20. 0.238 RKM-2018-004 (RSP11096)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.211 Skywalker OG (RSP10837)
  2. 0.233 RKM-2018-026 (RSP11118)
  3. 0.236 RKM-2018-032 (RSP11124)
  4. 0.247 RKM-2018-002 (RSP11093)
  5. 0.247 RKM-2018-004 (RSP11096)
  6. 0.247 Hermaphrodite ResearchSample2 (RSP11050)
  7. 0.255 RKM-2018-034 (RSP11126)
  8. 0.265 Pie Hoe (RSP11073)
  9. 0.269 RKM-2018-033 (RSP11125)
  10. 0.272 The Gift (RSP10988)
  11. 0.287 Kimbo Slice (RSP10997)
  12. 0.289 Hermaphrodite Research Sample1 (RSP11049)
  13. 0.289 Liberty Haze (RSP11000)
  14. 0.291 Blueberry Cheesecake (RSP10680)
  15. 0.291 Blueberry Cheesecake (RSP10684)
  16. 0.293 Durban Poison (RSP11014)
  17. 0.293 RKM-2018-009 (RSP11100)
  18. 0.294 RKM-2018-020 (RSP11112)
  19. 0.304 UP Sunrise (RSP10989)
  20. 0.308 Gold Cracker (RSP11048)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.444 80E (RSP11213)
  2. 0.437 JL 4th Gen 2 (RSP11194)
  3. 0.433 JL 3rd Gen Father (RSP11196)
  4. 0.427 JL 4th Gen 5 (RSP11199)
  5. 0.422 JL 4th Gen 4 (RSP11198)
  6. 0.421 JL yellow (RSP11075)
  7. 0.420 Northern Skunk (RSP11456)
  8. 0.417 JL 3rd Gen Mother (RSP11214)
  9. 0.415 Tiger Tail -30- (RSP11484)
  10. 0.415 Cherry Blossom (RSP11300)
  11. 0.413 JL 4th Gen 1 (RSP11193)
  12. 0.412 R1 (RSP11483)
  13. 0.412 80E (RSP11211)
  14. 0.411 80E (RSP11212)
  15. 0.410 Cherry Blossom (RSP11318)
  16. 0.410 Cbot-2019-005 (RSP11133)
  17. 0.410 Tanao Sri -46- (RSP11486)
  18. 0.409 Cherry Blossom (RSP11311)
  19. 0.409 Cherry Blossom (RSP11323)
  20. 0.408 Cherry Blossom (RSP11333)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.425 Cbot-2019-005 (RSP11133)
  2. 0.419 JL yellow (RSP11075)
  3. 0.402 Monoica (RSP10241)
  4. 0.400 Cherry (RSP11142)
  5. 0.393 Cherry (RSP11143)
  6. 0.390 Carmagnola (RSP11037)
  7. 0.390 RKM-2018-022 (RSP11114)
  8. 0.386 Black Beauty (RSP11035)
  9. 0.381 RKM-2018-019 (RSP11111)
  10. 0.380 KYRG-11 (RSP11051)
  11. 0.378 Kush Hemp E1 (RSP11128)
  12. 0.376 RKM-2018-006 (RSP11097)
  13. 0.376 Feral (RSP10890)
  14. 0.371 RKM-2018-023 (RSP11115)
  15. 0.367 RKM-2018-028 (RSP11120)
  16. 0.366 Cbot-2019-006 (RSP11134)
  17. 0.366 Tisza (RSP11044)
  18. 0.366 Lovrin (RSP10658)
  19. 0.365 Futura 75 (RSP10664)
  20. 0.363 USO 31 (RSP10981)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448266
Overlapping SNPs:
6
Concordance:
6

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495158
Overlapping SNPs:
1
Concordance:
1

Blockchain Registration Information

Transaction ID
74bf0429a7bf65baaf694430306c0ec15edde677e0e73915baead391ca487890
Stamping Certificate
Download PDF (39.5 KB)
SHASUM Hash
943bd87534ba076d2c498830ebc77237bb8d871652e6ca5772297129ffd29bb4
QR code for RSP12487

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