Pam1 x Dosidos 18
RSP 12502
Grower: Seattle Chronic Seeds
General Information
- Sample Name
- PDS1801
- Accession Date
- December 8, 2021
- Reported Plant Sex
- Male
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PHL-2 | c.932T>C | p.Leu311Pro | missense variant | moderate | contig2621 | 340210 | T/C | |
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.2564T>A | p.Phe855Tyr | missense variant | moderate | contig2621 | 342607 | T/A | |
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PHL-2 | c.2624C>T | p.Ser875Phe | missense variant | moderate | contig2621 | 342667 | C/T | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.2830A>C | p.Asn944His | missense variant | moderate | contig2621 | 342873 | A/C |
|
PHL-2 | c.2933G>T | p.Arg978Leu | missense variant | moderate | contig2621 | 342976 | G/T | |
PHL-2 | c.2936T>G | p.Val979Gly | missense variant | moderate | contig2621 | 342979 | T/G |
|
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PHL-2 | c.3467A>G | p.Gln1156Arg | missense variant | moderate | contig2621 | 343510 | A/G | |
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
DXR-2 | c.431C>G | p.Ala144Gly | missense variant | moderate | contig380 | 287760 | G/C | |
FAD2-2 | c.164A>G | p.His55Arg | missense variant | moderate | contig83 | 1803205 | T/C |
|
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
FAD2-2 | c.153G>T | p.Arg51Ser | missense variant | moderate | contig83 | 1803216 | C/A |
|
FAD2-2 | c.64G>T | p.Ala22Ser | missense variant | moderate | contig83 | 1803305 | C/A |
|
FAD2-2 | c.58C>T | p.His20Tyr | missense variant | moderate | contig83 | 1803311 | G/A |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 |
c.1230-2_123 |
splice acceptor variant & intron variant | high | contig97 | 243676 | TAG/T | ||
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 |
c.1803_1805d |
p.His601del | disruptive inframe deletion | moderate | contig97 | 244625 | ACAT/A |
|
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.2141C>G | p.Pro714Arg | missense variant | moderate | contig97 | 244972 | C/G | |
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
aPT1 | c.727G>T | p.Glu243* | stop gained | high | contig121 | 2841362 | G/T | |
aPT1 | c.864C>G | p.Asn288Lys | missense variant | moderate | contig121 | 2842407 | C/G | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
AAE1-2 | c.1118C>G | p.Thr373Ser | missense variant | moderate | contig81 | 210080 | C/G |
|
AAE1-2 | c.1541T>C | p.Val514Ala | missense variant | moderate | contig81 | 210503 | T/C |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
FAD4 | c.121G>T | p.Val41Phe | missense variant | moderate | contig784 | 1690873 | G/T |
|
FAD4 | c.220C>G | p.Arg74Gly | missense variant | moderate | contig784 | 1690972 | C/G |
|
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 | c.35G>A | p.Cys12Tyr | missense variant | moderate | contig1891 | 889357 | C/T | |
PIE1-2 | c.6653A>G | p.Asn2218Ser | missense variant | moderate | contig1460 | 1184434 | T/C | |
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
PIE1-2 | c.1656T>G | p.Asn552Lys | missense variant | moderate | contig1460 | 1191574 | A/C | |
PIE1-2 | c.1630G>C | p.Ala544Pro | missense variant | moderate | contig1460 | 1191600 | C/G | |
PIE1-2 | c.1289A>G | p.Asp430Gly | missense variant | moderate | contig1460 | 1192109 | T/C |
|
PIE1-2 | c.710C>T | p.Pro237Leu | missense variant | moderate | contig1460 | 1193804 | G/A | |
PIE1-2 | c.706T>C | p.Tyr236His | missense variant | moderate | contig1460 | 1193808 | A/G | |
PIE1-2 | c.637T>A | p.Ser213Thr | missense variant | moderate | contig1460 | 1194421 | A/T | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
FT | c.240C>G | p.Asn80Lys | missense variant | moderate | contig1561 | 3124664 | C/G |
|
FLD | c.2981T>C | p.Met994Thr | missense variant | moderate | contig1450 | 2044012 | A/G | |
FLD | c.2964C>A | p.Asp988Glu | missense variant | moderate | contig1450 | 2044029 | G/T | |
FLD | c.2929T>C | p.Phe977Leu | missense variant | moderate | contig1450 | 2044103 | A/G | |
FLD | c.125G>A | p.Ser42Asn | missense variant | moderate | contig1450 | 2047909 | C/T | |
PIE1-1 |
c.1124_1153d |
p.Asn375_Asp |
disruptive inframe insertion | moderate | contig1225 | 2281360 |
A/ATGAACCAAC |
|
PIE1-1 | c.1222C>G | p.Gln408Glu | missense variant | moderate | contig1225 | 2281482 | C/G | |
GGR | c.212G>T | p.Cys71Phe | missense variant | moderate | contig2282 | 549204 | G/T | |
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
PKSB-3 | c.1652A>G | p.Glu551Gly | missense variant | moderate | contig93 | 3339759 | A/G |
|
PKSB-3 |
c.1850_1852d |
p.Met617dup | disruptive inframe insertion | moderate | contig93 | 3339945 | A/AGAT |
|
PKSB-3 | c.1901C>G | p.Ala634Gly | missense variant | moderate | contig93 | 3340008 | C/G |
|
Nearest genetic relatives (All Samples)
- 0.115 B52 (SRR14708255)
- 0.120 PCL1 (SRR14708246)
- 0.121 Cream Sugar (RSP12487)
- 0.123 Pie Scream (RSP12482)
- 0.129 Kompolti (SRR14708277)
- 0.136 VIR 483 (SRR14708238)
- 0.160 Hawaii Maui Waui (SRR14708262)
- 0.163 Juicy Gummy x Royal Kush (RSP12484)
- 0.164 Cherry Lime Runtz (RSP12486)
- 0.167 Northern Light (SRR14708265)
- 0.171 Peach Cresendo (RSP12483)
- 0.175 VIR 483 (SRR14708239)
- 0.175 Alpine Rocket (SRR14708266)
- 0.179 Lift (RSP11378)
- 0.185 Triangle Kush x Square Wave BX (RSP12100)
- 0.191 QHI (SRR14708202)
- 0.192 Hindu Kush (SRR14708261)
- 0.197 Liberty Haze (RSP11000)
- 0.197 Rest (RSP11377)
- 0.197 Doug s Varin (RSP11243)
Nearest genetic relatives (Base Tree)
- 0.198 Liberty Haze (RSP11000)
- 0.198 Blueberry Cheesecake (RSP10684)
- 0.254 Pie Hoe (RSP11073)
- 0.262 Golden Goat 2 (RSP10991)
- 0.270 RKM-2018-031 (RSP11123)
- 0.277 Tisza (RSP10659)
- 0.277 Recon (RSP10755)
- 0.279 Tygra (RSP10667)
- 0.281 Durban Poison (RSP11014)
- 0.283 UP Sunrise (RSP10989)
- 0.288 RKM-2018-029 (RSP11121)
- 0.295 QUEEN JESUS (RSP10105)
- 0.297 Blueberry Cheesecake (RSP10680)
- 0.298 RKM-2018-034 (RSP11126)
- 0.299 Blueberry Cheesecake (RSP10672)
- 0.302 CST (RSP11002)
- 0.303 Jiangji (RSP10653)
- 0.308 KYRG-11 (RSP11051)
- 0.308 Gold Cracker (RSP11048)
- 0.311 Kimbo Slice (RSP10997)
Most genetically distant strains (All Samples)
- 0.437 Kush Hemp E1 (RSP11128)
- 0.407 Danny Noonan (RSP11070)
- 0.403 Northern Lights (RSP11501)
- 0.403 Chem 91 (RSP11185)
- 0.398 JL 3rd Gen Father (RSP11196)
- 0.398 White Label 1 (RSP11336)
- 0.398 GG4 (RSP11978)
- 0.396 80E (RSP11213)
- 0.396 JL yellow (RSP11075)
- 0.394 Cherry Blossom (RSP11328)
- 0.390 AVIDEKEL 2 0 (RSP11174)
- 0.387 Skunk 18 (RSP11038)
- 0.383 Cherry Blossom (RSP11301)
- 0.382 RKM-2018-012 (RSP11103)
- 0.381 JL 4th Gen 5 (RSP11199)
- 0.381 Cbot-2019-005 (RSP11133)
- 0.380 80E (RSP11211)
- 0.379 JL 4th Gen 2 (RSP11194)
- 0.373 Cbot-2019-004 (RSP11132)
- 0.373 Cherry Blossom (RSP11323)
Most genetically distant strains (Base Tree)
- 0.412 Kush Hemp E1 (RSP11128)
- 0.403 JL yellow (RSP11075)
- 0.390 RKM-2018-026 (RSP11118)
- 0.379 Cbot-2019-005 (RSP11133)
- 0.379 Skunk 18 (RSP11038)
- 0.366 Feral (RSP10890)
- 0.365 Cbot-2019-004 (RSP11132)
- 0.364 Black Beauty (RSP11035)
- 0.363 RKM-2018-002 (RSP11093)
- 0.362 Sour Raspberry (RSP10551)
- 0.360 RKM-2018-003 (RSP11094)
- 0.355 Cherry (RSP11142)
- 0.354 Ivory (RSP10668)
- 0.349 Carmagnola (RSP11037)
- 0.348 RKM-2018-006 (RSP11097)
- 0.347 RKM-2018-028 (RSP11120)
- 0.344 RKM-2018-027 (RSP11119)
- 0.342 Fedora 17 (RSP10661)
- 0.341 Blue Dream (RSP11033)
- 0.341 Monoica (RSP10241)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 2
- Concordance:
- 2
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 2
- Concordance:
- 2
Blockchain Registration Information
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b8361fd67fa95351
e749441198f99303 8ef9de2439655c1c e283a1d75e00a242 - Stamping Certificate
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