BEEFCAKE D #24
RSP 12651
Grower: Seattle Chronic Seeds
General Information
- Sample Name
- BCD24
- Accession Date
- April 27, 2022
- Reported Plant Sex
- Male
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Unknown
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
OAC-1 | c.260C>G | p.Ser87Cys | missense variant | moderate | contig931 | 118104 | G/C |
|
FAD2-2 | c.196T>C | p.Phe66Leu | missense variant | moderate | contig83 | 1803173 | A/G |
|
FAD2-2 | c.172G>T | p.Asp58Tyr | missense variant | moderate | contig83 | 1803197 | C/A |
|
FAD2-2 | c.164A>G | p.His55Arg | missense variant | moderate | contig83 | 1803205 | T/C |
|
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
FAD2-2 | c.64G>T | p.Ala22Ser | missense variant | moderate | contig83 | 1803305 | C/A |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 | c.574A>G | p.Asn192Asp | missense variant | moderate | contig97 | 242280 | A/G | |
ELF3 | c.757C>T | p.Pro253Ser | missense variant | moderate | contig97 | 242463 | C/T | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.811G>A | p.Gly271Arg | missense variant | moderate | contig97 | 242517 | G/A |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 |
c.1230-2_123 |
splice acceptor variant & intron variant | high | contig97 | 243676 | TAG/T | ||
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 | c.1473A>C | p.Lys491Asn | missense variant | moderate | contig97 | 244304 | A/C |
|
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 |
c.1803_1805d |
p.His601del | disruptive inframe deletion | moderate | contig97 | 244625 | ACAT/A |
|
ELF3 | c.1807G>C | p.Gly603Arg | missense variant | moderate | contig97 | 244638 | G/C |
|
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.1982A>C | p.Asn661Thr | missense variant | moderate | contig97 | 244813 | A/C |
|
ELF3 | c.2141C>G | p.Pro714Arg | missense variant | moderate | contig97 | 244972 | C/G | |
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
aPT4 | c.35A>C | p.Gln12Pro | missense variant | moderate | contig121 | 2828691 | A/C |
|
aPT4 | c.216A>T | p.Lys72Asn | missense variant | moderate | contig121 | 2828872 | A/T |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 | c.884C>T | p.Thr295Ile | missense variant | moderate | contig81 | 209846 | C/T |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
AAE1-2 | c.1118C>G | p.Thr373Ser | missense variant | moderate | contig81 | 210080 | C/G |
|
AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
|
AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
|
AAE1-2 | c.1434G>T | p.Glu478Asp | missense variant | moderate | contig81 | 210396 | G/T |
|
AAE1-2 | c.1541T>C | p.Val514Ala | missense variant | moderate | contig81 | 210503 | T/C |
|
PHL-1 | c.2651C>T | p.Ala884Val | missense variant | moderate | contig1439 | 1487146 | G/A | |
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2561A>T | p.Asn854Ile | missense variant | moderate | contig1439 | 1487236 | T/A | |
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1381G>A | p.Asp461Asn | missense variant | moderate | contig1891 | 886367 | C/T |
|
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 | c.35G>A | p.Cys12Tyr | missense variant | moderate | contig1891 | 889357 | C/T | |
HDS-1 |
c.-108+1_-10 |
splice donor variant & intron variant | high | contig1891 | 889975 | A/AC |
|
|
PIE1-2 | c.6653A>G | p.Asn2218Ser | missense variant | moderate | contig1460 | 1184434 | T/C | |
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
PIE1-2 | c.710C>T | p.Pro237Leu | missense variant | moderate | contig1460 | 1193804 | G/A | |
PIE1-2 | c.706T>C | p.Tyr236His | missense variant | moderate | contig1460 | 1193808 | A/G | |
EMF2 | c.722C>T | p.Thr241Ile | missense variant | moderate | contig954 | 3050302 | C/T | |
EMF2 | c.1205C>T | p.Ala402Val | missense variant & splice region variant | moderate | contig954 | 3055694 | C/T | |
EMF2 | c.1228A>G | p.Ser410Gly | missense variant | moderate | contig954 | 3055717 | A/G |
|
EMF2 | c.1315G>C | p.Ala439Pro | missense variant | moderate | contig954 | 3055804 | G/C | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
FT | c.240C>G | p.Asn80Lys | missense variant | moderate | contig1561 | 3124664 | C/G |
|
AAE1-3 | c.739A>G | p.Met247Val | missense variant | moderate | contig976 | 1083115 | T/C |
|
AAE1-3 | c.722G>A | p.Arg241Lys | missense variant | moderate | contig976 | 1083132 | C/T |
|
AAE1-3 | c.695C>T | p.Thr232Ile | missense variant | moderate | contig976 | 1083159 | G/A |
|
AAE1-3 | c.659G>A | p.Arg220Gln | missense variant | moderate | contig976 | 1083195 | C/T |
|
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
AAE1-3 | c.610delG | p.Glu204fs | frameshift variant | high | contig976 | 1083243 | TC/T |
|
AAE1-3 |
c.600_608del |
p.Ser201_Asp |
disruptive inframe deletion | moderate | contig976 | 1083245 | ATCACCACTG/A |
|
AAE1-3 | c.596A>T | p.Asn199Ile | missense variant | moderate | contig976 | 1083258 | T/A |
|
AAE1-3 | c.382T>C | p.Tyr128His | missense variant | moderate | contig976 | 1083643 | A/G |
|
AAE1-3 | c.293A>G | p.Asp98Gly | missense variant | moderate | contig976 | 1083732 | T/C |
|
AAE1-3 | c.260T>C | p.Val87Ala | missense variant | moderate | contig976 | 1083765 | A/G |
|
AAE1-3 | c.233C>G | p.Ser78Cys | missense variant | moderate | contig976 | 1083842 | G/C |
|
AAE1-3 | c.212C>G | p.Thr71Arg | missense variant | moderate | contig976 | 1083863 | G/C |
|
AAE1-3 | c.199A>G | p.Asn67Asp | missense variant | moderate | contig976 | 1083876 | T/C |
|
AAE1-3 | c.188A>G | p.Asn63Ser | missense variant | moderate | contig976 | 1083887 | T/C |
|
AAE1-3 | c.167A>G | p.Glu56Gly | missense variant | moderate | contig976 | 1083908 | T/C |
|
AAE1-3 | c.125A>G | p.Glu42Gly | missense variant | moderate | contig976 | 1083950 | T/C |
|
AAE1-3 | c.79A>G | p.Thr27Ala | missense variant | moderate | contig976 | 1083996 | T/C |
|
AAE1-3 | c.52G>A | p.Gly18Ser | missense variant | moderate | contig976 | 1084023 | C/T |
|
AAE1-3 | c.8C>T | p.Ser3Leu | missense variant | moderate | contig976 | 1084067 | G/A |
|
PIE1-1 | c.773A>G | p.Asn258Ser | missense variant & splice region variant | moderate | contig1225 | 2279897 | A/G | |
PIE1-1 | c.1222C>G | p.Gln408Glu | missense variant | moderate | contig1225 | 2281482 | C/G | |
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
PKSB-3 | c.1652A>G | p.Glu551Gly | missense variant | moderate | contig93 | 3339759 | A/G |
|
PKSB-3 |
c.1850_1852d |
p.Met617dup | disruptive inframe insertion | moderate | contig93 | 3339945 | A/AGAT |
|
Nearest genetic relatives (All Samples)
- 0.176 Whitey (RSP11363)
- 0.179 BEEFCAKE D (RSP12642)
- 0.183 Super Sour Diesel (RSP11191)
- 0.187 RKM-2018-002 (RSP11093)
- 0.189 Sour D (RSP11343)
- 0.191 Domnesia (RSP11184)
- 0.193 East Coast Sour Diesel (RSP10243)
- 0.198 501st OG (RSP11241)
- 0.200 Serious Happiness (RSP10763)
- 0.203 Durban Poison 1 (RSP11013)
- 0.203 Trump x Trump (RSP11466)
- 0.206 New York City Deisel (RSP11225)
- 0.206 CHEM4 (RSP12090)
- 0.207 RKM-2018-021 (RSP11113)
- 0.207 RKM-2018-032 (RSP11124)
- 0.209 Blue Dream (RSP11010)
- 0.209 Motor Breath 15 (RSP12093)
- 0.210 Thank You Jerry (RSP11459)
- 0.210 RKM-2018-017 (RSP11109)
- 0.210 Dave Alaska (RSP11627)
Nearest genetic relatives (Base Tree)
- 0.184 RKM-2018-002 (RSP11093)
- 0.212 RKM-2018-005 (RSP11096)
- 0.217 RKM-2018-032 (RSP11124)
- 0.218 RKM-2018-033 (RSP11125)
- 0.223 Blueberry Cheesecake (RSP10684)
- 0.230 Durban Poison (RSP11014)
- 0.231 Hermaphrodite Research Sample1 (RSP11049)
- 0.232 Liberty Haze (RSP11000)
- 0.237 Skywalker OG (RSP10837)
- 0.243 Gold Cracker (RSP11048)
- 0.254 Sour Raspberry (RSP10551)
- 0.258 Golden Goat 2 (RSP10991)
- 0.263 RKM-2018-009 (RSP11100)
- 0.263 The Gift (RSP10988)
- 0.265 RKM-2018-020 (RSP11112)
- 0.265 Pie Hoe (RSP11073)
- 0.270 CST (RSP11002)
- 0.275 Blue Dream (RSP11033)
- 0.277 Hermaphrodite ResearchSample2 (RSP11050)
- 0.280 Cbot-2019-006 (RSP11134)
Most genetically distant strains (All Samples)
- 0.435 80E (RSP11213)
- 0.426 80E (RSP11212)
- 0.425 Cherry Blossom (RSP11323)
- 0.421 Cherry Blossom (RSP11311)
- 0.421 IUP2 (SRR14708257)
- 0.421 Cherry Blossom (RSP11328)
- 0.421 IUP3 (SRR14708256)
- 0.417 IUP1 (SRR14708258)
- 0.414 Tanao Sri 46 (RSP11486)
- 0.414 80E (RSP11211)
- 0.413 Tiger Tail 30 (RSP11484)
- 0.412 Cherry Blossom (RSP11309)
- 0.409 Cherry Blossom (RSP11318)
- 0.408 Cherry Blossom (RSP11317)
- 0.407 Unknown- Cherry Wine - 003 (RSP11270)
- 0.406 R1 (RSP11483)
- 0.402 CS (RSP11208)
- 0.401 Cbot-2019-005 (RSP11133)
- 0.400 Unknown- Cherry Wine - 001 (RSP11268)
- 0.399 Cherry Blossom (RSP11312)
Most genetically distant strains (Base Tree)
- 0.409 Cbot-2019-005 (RSP11133)
- 0.382 JL yellow (RSP11075)
- 0.382 Carmagnola (RSP11037)
- 0.377 Monoica (RSP10241)
- 0.376 Feral (RSP10890)
- 0.366 USO 31 (RSP10981)
- 0.364 Carmagnola (RSP10979)
- 0.362 Ivory (RSP10668)
- 0.361 Santhica27 (RSP11047)
- 0.359 Fedora 17 (RSP10661)
- 0.356 Cherry (RSP11142)
- 0.356 Futura 75 (RSP10664)
- 0.353 Lovrin (RSP10658)
- 0.352 Jiangji (RSP10653)
- 0.347 Kyrgyz Gold (RSP11054)
- 0.340 Cbot-2019-004 (RSP11132)
- 0.338 KYRG-11 (RSP11051)
- 0.337 Black Beauty (RSP11035)
- 0.337 RKM-2018-006 (RSP11097)
- 0.334 Tygra (RSP10667)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 89
- Concordance:
- 53
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 5
- Concordance:
- 4
Blockchain Registration Information
- Transaction ID
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916a5a962aba1dc8
72c842190e6d07fa 37417c772e39316d fb589f6ebe8969bb - Stamping Certificate
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- SHASUM Hash
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651408045bd5290f
993c6ce02cc81333 2427d115cbd031fa 539e64aea3b3736c