Purple Pakistani
RSP 12800
Grower: Devi
General Information
- Sample Name
- Purple Pakistani-20221019
- Accession Date
- October 19, 2022
- Reported Plant Sex
- Male
- Report Type
- StrainSEEK v3 10Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type II
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PHL-2 | c.455A>C | p.Asp152Ala | missense variant | moderate | contig2621 | 339191 | A/C | |
PHL-2 | c.722G>A | p.Gly241Glu | missense variant | moderate | contig2621 | 339860 | G/A |
|
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.1364A>G | p.Asp455Gly | missense variant | moderate | contig2621 | 340642 | A/G |
|
PHL-2 | c.1381T>G | p.Phe461Val | missense variant | moderate | contig2621 | 340659 | T/G |
|
PHL-2 | c.1438C>G | p.Leu480Val | missense variant | moderate | contig2621 | 340716 | C/G |
|
PHL-2 | c.1450G>A | p.Glu484Lys | missense variant | moderate | contig2621 | 340728 | G/A |
|
PHL-2 | c.1493G>A | p.Gly498Asp | missense variant | moderate | contig2621 | 340771 | G/A |
|
PHL-2 | c.2564T>A | p.Phe855Tyr | missense variant | moderate | contig2621 | 342607 | T/A | |
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PHL-2 | c.2756A>C | p.Glu919Ala | missense variant | moderate | contig2621 | 342799 | A/C | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.2830A>G | p.Asn944Asp | missense variant | moderate | contig2621 | 342873 | A/G |
|
PHL-2 |
c.2903_2905d |
p.Ser968dup | disruptive inframe insertion | moderate | contig2621 | 342939 | T/TGCA | |
PHL-2 | c.3002A>G | p.Tyr1001Cys | missense variant | moderate | contig2621 | 343045 | A/G | |
PHL-2 | c.3027G>T | p.Lys1009Asn | missense variant | moderate | contig2621 | 343070 | G/T | |
PHL-2 | c.3033T>G | p.Cys1011Trp | missense variant | moderate | contig2621 | 343076 | T/G | |
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PHL-2 | c.3379C>G | p.His1127Asp | missense variant | moderate | contig2621 | 343422 | C/G |
|
PHL-2 | c.3380A>G | p.His1127Arg | missense variant | moderate | contig2621 | 343423 | A/G |
|
PHL-2 | c.3381T>A | p.His1127Gln | missense variant | moderate | contig2621 | 343424 | T/A |
|
PHL-2 | c.3467A>T | p.Gln1156Leu | missense variant | moderate | contig2621 | 343510 | A/T |
|
PHL-2 | c.3552delG | p.Lys1185fs | frameshift variant | high | contig2621 | 343593 | CG/C |
|
PHL-2 |
c.3556_3557d |
p.Lys1186fs | frameshift variant | high | contig2621 | 343598 | GAA/G | |
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
PKSG-2a | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1944616 | C/T |
|
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.718T>A | p.Phe240Ile | missense variant | moderate | contig700 | 1950920 | A/T |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
DXR-2 | c.431C>G | p.Ala144Gly | missense variant | moderate | contig380 | 287760 | G/C | |
FAD2-2 | c.196T>C | p.Phe66Leu | missense variant | moderate | contig83 | 1803173 | A/G |
|
FAD2-2 | c.185C>T | p.Ala62Val | missense variant | moderate | contig83 | 1803184 | G/A |
|
FAD2-2 | c.172G>T | p.Asp58Tyr | missense variant | moderate | contig83 | 1803197 | C/A |
|
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
FAD2-2 | c.110C>T | p.Ala37Val | missense variant | moderate | contig83 | 1803259 | G/A |
|
ELF4 | c.144T>A | p.Asp48Glu | missense variant | moderate | contig869 | 622426 | A/T |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 | c.574A>G | p.Asn192Asp | missense variant | moderate | contig97 | 242280 | A/G | |
ELF3 | c.757C>T | p.Pro253Ser | missense variant | moderate | contig97 | 242463 | C/T | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 |
c.1803_1805d |
p.His601del | disruptive inframe deletion | moderate | contig97 | 244625 | ACAT/A |
|
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
ELF3 | c.2216A>G | p.His739Arg | missense variant | moderate | contig97 | 245047 | A/G | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
aPT1 | c.670T>A | p.Ser224Thr | missense variant | moderate | contig121 | 2840278 | T/A |
|
aPT1 | c.727G>T | p.Glu243* | stop gained | high | contig121 | 2841362 | G/T | |
aPT1 | c.864C>G | p.Asn288Lys | missense variant | moderate | contig121 | 2842407 | C/G | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
PHL-1 | c.3470-1G>A | splice acceptor variant & intron variant | high | contig1439 | 1485452 | C/T |
|
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
TFL1 | c.304G>A | p.Asp102Asn | missense variant & splice region variant | moderate | contig1636 | 520613 | C/T |
|
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1543A>G | p.Thr515Ala | missense variant & splice region variant | moderate | contig1891 | 886011 | T/C |
|
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 | c.19C>G | p.Pro7Ala | missense variant | moderate | contig1891 | 889373 | G/C |
|
PIE1-2 | c.6773T>C | p.Leu2258Ser | missense variant | moderate | contig1460 | 1184314 | A/G | |
PIE1-2 | c.6653A>G | p.Asn2218Ser | missense variant | moderate | contig1460 | 1184434 | T/C | |
PIE1-2 | c.6636T>G | p.Asp2212Glu | missense variant | moderate | contig1460 | 1184451 | A/C | |
PIE1-2 | c.6623C>T | p.Ala2208Val | missense variant | moderate | contig1460 | 1184464 | G/A | |
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.3512A>G | p.Lys1171Arg | missense variant | moderate | contig1460 | 1188528 | T/C | |
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
PIE1-2 | c.1630G>C | p.Ala544Pro | missense variant | moderate | contig1460 | 1191600 | C/G | |
PIE1-2 | c.1289A>G | p.Asp430Gly | missense variant | moderate | contig1460 | 1192109 | T/C |
|
PIE1-2 | c.982G>A | p.Glu328Lys | missense variant | moderate | contig1460 | 1192416 | C/T | |
PIE1-2 | c.710C>T | p.Pro237Leu | missense variant | moderate | contig1460 | 1193804 | G/A | |
PIE1-2 | c.706T>C | p.Tyr236His | missense variant | moderate | contig1460 | 1193808 | A/G | |
PIE1-2 | c.637T>A | p.Ser213Thr | missense variant | moderate | contig1460 | 1194421 | A/T | |
FLD | c.2981T>C | p.Met994Thr | missense variant | moderate | contig1450 | 2044012 | A/G | |
FLD | c.2964C>A | p.Asp988Glu | missense variant | moderate | contig1450 | 2044029 | G/T | |
FLD | c.2686G>A | p.Ala896Thr | missense variant | moderate | contig1450 | 2044848 | C/T | |
FLD | c.2681T>C | p.Ile894Thr | missense variant | moderate | contig1450 | 2044853 | A/G | |
PIE1-1 | c.1222C>G | p.Gln408Glu | missense variant | moderate | contig1225 | 2281482 | C/G | |
PIE1-1 | c.1394A>G | p.Asp465Gly | missense variant | moderate | contig1225 | 2281654 | A/G | |
PIE1-1 | c.3614A>G | p.Lys1205Arg | missense variant | moderate | contig1225 | 2285229 | A/G | |
PIE1-1 | c.3619G>A | p.Val1207Met | missense variant | moderate | contig1225 | 2285234 | G/A |
|
PIE1-1 | c.6725C>T | p.Ala2242Val | missense variant | moderate | contig1225 | 2289290 | C/T | |
GGR | c.133G>A | p.Val45Ile | missense variant | moderate | contig2282 | 549125 | G/A |
|
GGR | c.317C>T | p.Pro106Leu | missense variant | moderate | contig2282 | 549309 | C/T | |
GGR | c.456T>A | p.His152Gln | missense variant | moderate | contig2282 | 549448 | T/A |
|
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
GGR | c.810A>T | p.Glu270Asp | missense variant | moderate | contig2282 | 549802 | A/T |
|
Nearest genetic relatives (All Samples)
- 0.213 Animal Tree (RSP12791)
- 0.218 Animal Tree x Skittles 2 (RSP12793)
- 0.219 El Presidente (RSP12807)
- 0.224 New BSR (RSP12104)
- 0.224 RKM-2018-008 (RSP11099)
- 0.225 Blueberry Rainbow Belts 1 (RSP12798)
- 0.225 The Gift (RSP10988)
- 0.229 GMO x The inhaler (RSP12508)
- 0.231 JABBA S STASH (RSP11348)
- 0.232 GMO x Poison Momosa (RSP12626)
- 0.234 GMO x Poison Momosa (RSP12500)
- 0.236 NSPM1 (RSP11362)
- 0.238 GMO (RSP12091)
- 0.240 Sunday Driver (RSP11071)
- 0.240 Zombie Presidente (RSP12808)
- 0.243 SFVxTK (RSP11072)
- 0.244 Animal Tree x Skittles 4 (RSP12792)
- 0.244 Domnesia (RSP11184)
- 0.244 A13 (RSP12654)
- 0.245 Super Runtz (RSP12810)
Nearest genetic relatives (Base Tree)
- 0.226 The Gift (RSP10988)
- 0.249 RKM-2018-034 (RSP11126)
- 0.249 Skywalker OG (RSP10837)
- 0.250 RKM-2018-033 (RSP11125)
- 0.261 RKM-2018-026 (RSP11118)
- 0.275 Hermaphrodite ResearchSample2 (RSP11050)
- 0.277 Kush Hemp E1 (RSP11128)
- 0.278 Blueberry Cheesecake (RSP10684)
- 0.279 RKM-2018-032 (RSP11124)
- 0.283 Liberty Haze (RSP11000)
- 0.288 Kimbo Slice (RSP10997)
- 0.294 RKM-2018-029 (RSP11121)
- 0.294 QUEEN JESUS (RSP10105)
- 0.294 Pie Hoe (RSP11073)
- 0.296 Blueberry Cheesecake (RSP10680)
- 0.305 RKM-2018-005 (RSP11096)
- 0.306 Tygra (RSP10667)
- 0.307 Kyrgyz Gold (RSP11054)
- 0.309 Recon (RSP10755)
- 0.311 Jiangji (RSP10653)
Most genetically distant strains (All Samples)
- 0.458 Cherry Blossom (RSP11323)
- 0.453 Cherry Blossom (RSP11318)
- 0.430 Cherry Blossom (RSP11306)
- 0.430 Tanao Sri 46 (RSP11486)
- 0.430 Cherry Blossom (RSP11325)
- 0.425 JL yellow (RSP11075)
- 0.421 Cherry Blossom (RSP11328)
- 0.420 Unknown- Cherry Wine - 001 (RSP11268)
- 0.417 Unknown- Cherry Wine - 003 (RSP11270)
- 0.415 Unknown- Cherry Wine - 002 (RSP11269)
- 0.414 JL 3rd Gen Mother (RSP11214)
- 0.414 Cherry Blossom (RSP11298)
- 0.407 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.407 Northern Skunk (RSP11456)
- 0.405 Cherry Blossom (RSP11312)
- 0.405 Cherry Blossom (RSP11322)
- 0.404 Cherry Blossom (RSP11309)
- 0.403 Cherry Blossom (RSP11301)
- 0.403 JL 3rd Gen Mother (RSP11197)
- 0.403 Cherry Blossom (RSP11315)
Most genetically distant strains (Base Tree)
- 0.426 JL yellow (RSP11075)
- 0.380 RKM-2018-006 (RSP11097)
- 0.376 RKM-2018-023 (RSP11115)
- 0.375 Italian Kiss (RSP11034)
- 0.370 RKM-2018-027 (RSP11119)
- 0.369 RKM-2018-018 (RSP11110)
- 0.368 Cbot-2019-001 (RSP11129)
- 0.367 Monoica (RSP10241)
- 0.366 Cbot-2019-005 (RSP11133)
- 0.364 RKM-2018-003 (RSP11094)
- 0.364 Cherry (RSP11143)
- 0.361 Feral (RSP10890)
- 0.360 Cherry (RSP11142)
- 0.359 Skunk 18 (RSP11038)
- 0.357 Black Beauty (RSP11035)
- 0.355 Blueberry Cheesecake (RSP10672)
- 0.355 Carmagnola (RSP11037)
- 0.352 RKM-2018-028 (RSP11120)
- 0.352 RKM-2018-022 (RSP11114)
- 0.350 Cbot-2019-004 (RSP11132)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 96
- Concordance:
- 56
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 3
- Concordance:
- 3
Blockchain Registration Information
- Transaction ID
-
bb6147c3c95cba69
587f2c6b58572728 1b05815f0f158651 2d3bb237e997507a - Stamping Certificate
- Download PDF (39.7 KB)
- SHASUM Hash
-
6cf117193c321b7c
9eed1e08a0d5990b 9c1c59148536dd66 2dc4368ca580a893