D1
RSP 12875
Grower: Jacmar Global
General Information
- Sample Name
- D1-D1.2-20230323
- Accession Date
- March 22, 2023
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v3 10Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
THCAS | c.1625C>T | p.Pro542Leu | missense variant | moderate | contig741 | 4416203 | G/A |
|
THCAS | c.749C>A | p.Ala250Asp | missense variant | moderate | contig741 | 4417079 | G/T | |
THCAS | c.187A>C | p.Ile63Leu | missense variant | moderate | contig741 | 4417641 | T/G |
Variants (Select Genes of Interest)
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.718T>A | p.Phe240Ile | missense variant | moderate | contig700 | 1950920 | A/T |
|
PKSG-2b | c.592A>G | p.Asn198Asp | missense variant | moderate | contig700 | 1951046 | T/C |
|
PKSG-2b | c.560C>T | p.Thr187Met | missense variant | moderate | contig700 | 1951078 | G/A |
|
PKSG-2b | c.558G>A | p.Met186Ile | missense variant | moderate | contig700 | 1951080 | C/T |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
DXR-2 | c.431C>G | p.Ala144Gly | missense variant | moderate | contig380 | 287760 | G/C | |
OAC-1 | c.260C>G | p.Ser87Cys | missense variant | moderate | contig931 | 118104 | G/C |
|
OAC-1 | c.220A>G | p.Ile74Val | missense variant | moderate | contig931 | 118144 | T/C | |
FAD2-2 | c.196T>C | p.Phe66Leu | missense variant | moderate | contig83 | 1803173 | A/G |
|
FAD2-2 | c.172G>T | p.Asp58Tyr | missense variant | moderate | contig83 | 1803197 | C/A |
|
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 | c.574A>G | p.Asn192Asp | missense variant | moderate | contig97 | 242280 | A/G | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 |
c.1230-2_123 |
splice acceptor variant & intron variant | high | contig97 | 243676 | TAG/T | ||
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 |
c.1803_1805d |
p.His601del | disruptive inframe deletion | moderate | contig97 | 244625 | ACAT/A |
|
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.2140C>T | p.Pro714Ser | missense variant | moderate | contig97 | 244971 | C/T | |
ELF3 | c.2141C>G | p.Pro714Arg | missense variant | moderate | contig97 | 244972 | C/G | |
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
Edestin | c.241C>T | p.Gln81* | stop gained | high | contig850 | 3065049 | G/A |
|
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1381G>A | p.Asp461Asn | missense variant | moderate | contig1891 | 886367 | C/T |
|
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 | c.35G>A | p.Cys12Tyr | missense variant | moderate | contig1891 | 889357 | C/T | |
PIE1-2 | c.6773T>C | p.Leu2258Ser | missense variant | moderate | contig1460 | 1184314 | A/G | |
PIE1-2 | c.6653A>G | p.Asn2218Ser | missense variant | moderate | contig1460 | 1184434 | T/C | |
PIE1-2 | c.6636T>G | p.Asp2212Glu | missense variant | moderate | contig1460 | 1184451 | A/C | |
PIE1-2 | c.6623C>T | p.Ala2208Val | missense variant | moderate | contig1460 | 1184464 | G/A | |
PIE1-2 | c.6307A>C | p.Lys2103Gln | missense variant | moderate | contig1460 | 1185177 | T/G | |
PIE1-2 | c.6149G>A | p.Arg2050Lys | missense variant | moderate | contig1460 | 1185335 | C/T | |
PIE1-2 | c.3512A>G | p.Lys1171Arg | missense variant | moderate | contig1460 | 1188528 | T/C | |
PIE1-2 |
c.2083_2085d |
p.Val695del | conservative inframe deletion | moderate | contig1460 | 1189954 | GGAC/G | |
PIE1-2 | c.2072A>G | p.His691Arg | missense variant | moderate | contig1460 | 1189968 | T/C | |
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
PIE1-2 | c.1630G>C | p.Ala544Pro | missense variant | moderate | contig1460 | 1191600 | C/G | |
PIE1-2 | c.1289A>G | p.Asp430Gly | missense variant | moderate | contig1460 | 1192109 | T/C |
|
PIE1-2 | c.1117C>G | p.Gln373Glu | missense variant | moderate | contig1460 | 1192281 | G/C | |
PIE1-2 | c.1093G>A | p.Gly365Ser | missense variant | moderate | contig1460 | 1192305 | C/T | |
PIE1-2 | c.982G>A | p.Glu328Lys | missense variant | moderate | contig1460 | 1192416 | C/T | |
PIE1-2 | c.710C>T | p.Pro237Leu | missense variant | moderate | contig1460 | 1193804 | G/A | |
PIE1-2 | c.706T>C | p.Tyr236His | missense variant | moderate | contig1460 | 1193808 | A/G | |
PIE1-2 | c.637T>A | p.Ser213Thr | missense variant | moderate | contig1460 | 1194421 | A/T | |
EMF2 | c.722C>T | p.Thr241Ile | missense variant | moderate | contig954 | 3050302 | C/T | |
EMF2 | c.1205C>T | p.Ala402Val | missense variant & splice region variant | moderate | contig954 | 3055694 | C/T | |
EMF2 | c.1228A>G | p.Ser410Gly | missense variant | moderate | contig954 | 3055717 | A/G |
|
EMF2 | c.1315G>C | p.Ala439Pro | missense variant | moderate | contig954 | 3055804 | G/C | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
FT | c.240C>G | p.Asn80Lys | missense variant | moderate | contig1561 | 3124664 | C/G |
|
FLD | c.2981T>C | p.Met994Thr | missense variant | moderate | contig1450 | 2044012 | A/G | |
FLD | c.2964C>A | p.Asp988Glu | missense variant | moderate | contig1450 | 2044029 | G/T | |
FLD | c.2929T>C | p.Phe977Leu | missense variant | moderate | contig1450 | 2044103 | A/G | |
FLD | c.125G>A | p.Ser42Asn | missense variant | moderate | contig1450 | 2047909 | C/T | |
PIE1-1 | c.742T>A | p.Ser248Thr | missense variant | moderate | contig1225 | 2279320 | T/A | |
PIE1-1 | c.773A>G | p.Asn258Ser | missense variant & splice region variant | moderate | contig1225 | 2279897 | A/G | |
PIE1-1 | c.811T>C | p.Tyr271His | missense variant | moderate | contig1225 | 2279935 | T/C | |
PIE1-1 | c.815C>T | p.Pro272Leu | missense variant | moderate | contig1225 | 2279939 | C/T | |
PIE1-1 | c.1222C>G | p.Gln408Glu | missense variant | moderate | contig1225 | 2281482 | C/G | |
PIE1-1 | c.6725C>T | p.Ala2242Val | missense variant | moderate | contig1225 | 2289290 | C/T | |
GGR | c.362A>T | p.Tyr121Phe | missense variant | moderate | contig2282 | 549354 | A/T |
|
GGR | c.456T>A | p.His152Gln | missense variant | moderate | contig2282 | 549448 | T/A |
|
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
GGR | c.679G>A | p.Glu227Lys | missense variant | moderate | contig2282 | 549671 | G/A |
|
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
Nearest genetic relatives (All Samples)
- 0.193 Domnesia (RSP11184)
- 0.196 Electra (RSP11366)
- 0.197 Blue Dream (RSP11004)
- 0.201 RINGO S ANGEL (RSP10085)
- 0.207 Trump x Trump (RSP11466)
- 0.207 CBG- 40 (RSP11444)
- 0.208 Lift (RSP11378)
- 0.209 Thank You Jerry (RSP11459)
- 0.213 Rest (RSP11377)
- 0.213 Blue Dream (RSP11010)
- 0.213 Blue Dream (RSP11017)
- 0.216 Super Blue Dream (RSP11011)
- 0.217 Blueberry Cheesecake (RSP10684)
- 0.218 Blue Dream (RSP11006)
- 0.219 Serious Happiness (RSP10763)
- 0.221 Joy (RSP11380)
- 0.225 JL Cross 10 (RSP11511)
- 0.225 Blue Dream (RSP11007)
- 0.227 SHERBERT (RSP11355)
- 0.228 Blue Dream (RSP11008)
Nearest genetic relatives (Base Tree)
- 0.227 Blueberry Cheesecake (RSP10684)
- 0.230 Liberty Haze (RSP11000)
- 0.239 Golden Goat 2 (RSP10991)
- 0.244 Blue Dream (RSP11033)
- 0.266 UP Sunrise (RSP10989)
- 0.269 Gold Cracker (RSP11048)
- 0.274 Durban Poison (RSP11014)
- 0.278 RKM-2018-029 (RSP11121)
- 0.278 QUEEN JESUS (RSP10105)
- 0.279 RKM-2018-033 (RSP11125)
- 0.279 Recon (RSP10755)
- 0.282 RKM-2018-018 (RSP11110)
- 0.283 RKM-2018-020 (RSP11112)
- 0.284 Hermaphrodite Research Sample1 (RSP11049)
- 0.286 RKM-2018-019 (RSP11111)
- 0.286 Sour Raspberry (RSP10551)
- 0.286 RKM-2018-032 (RSP11124)
- 0.287 CST (RSP11002)
- 0.288 RKM-2018-028 (RSP11120)
- 0.289 RKM-2018-031 (RSP11123)
Most genetically distant strains (All Samples)
- 0.432 Cherry Blossom (RSP11328)
- 0.429 Cherry Blossom (RSP11311)
- 0.427 JL yellow (RSP11075)
- 0.424 Cherry Blossom (RSP11323)
- 0.419 JL 3rd Gen Mother (RSP11214)
- 0.414 Unknown- Cherry Wine - 001 (RSP11268)
- 0.412 Cherry Blossom (RSP11317)
- 0.410 Cherry Blossom (RSP11314)
- 0.409 Unknown- Cherry Wine - 003 (RSP11270)
- 0.408 JL 3rd Gen Mother (RSP11197)
- 0.401 Northern Lights (RSP11501)
- 0.399 Cherry Blossom (RSP11334)
- 0.396 Cherry Blossom (RSP11309)
- 0.395 Cherry Blossom (RSP11318)
- 0.395 Cherry Blossom (RSP11306)
- 0.393 Unknown- Cherry Wine - 004 (RSP11271)
- 0.393 BagSeed (RSP12501)
- 0.392 BagSeed (RSP12627)
- 0.392 Cherry Blossom (RSP11298)
- 0.390 Feral (RSP11205)
Most genetically distant strains (Base Tree)
- 0.428 JL yellow (RSP11075)
- 0.391 Feral (RSP10890)
- 0.376 Carmagnola (RSP11037)
- 0.373 Monoica (RSP10241)
- 0.367 Fedora 17 (RSP10661)
- 0.365 Ivory (RSP10668)
- 0.363 Cbot-2019-005 (RSP11133)
- 0.361 Santhica27 (RSP11047)
- 0.357 KYRG-11 (RSP11051)
- 0.356 Kyrgyz Gold (RSP11054)
- 0.355 Lovrin (RSP10658)
- 0.355 Carmagnola (RSP10979)
- 0.353 Futura 75 (RSP10664)
- 0.352 Kush Hemp E1 (RSP11128)
- 0.349 USO 31 (RSP10981)
- 0.345 Cherry (RSP11142)
- 0.343 RKM-2018-006 (RSP11097)
- 0.338 RKM-2018-026 (RSP11118)
- 0.337 Tisza (RSP11044)
- 0.336 RKM-2018-002 (RSP11093)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 89
- Concordance:
- 60
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 14
- Concordance:
- 12
Blockchain Registration Information
- Transaction ID
-
7e3fdfcd35099a3f
8fd562b733f5ad7a cba22fdd0111998f 772779fad495d757 - Stamping Certificate
- Download PDF (39.8 KB)
- SHASUM Hash
-
9ac4a9e297230b79
0c98299d966d37ee 1d5e587a9f016782 bb7596143a67e19c