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Peach Ringz

RSP 12899

Grower: Collin Palmer

General Information

Accession Date
August 13, 2023
Reported Plant Sex
Female
DNA Extracted From
Leaf

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type1

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0324
male female RSP12899

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)
THCAS c.976G>A p.Asp326Asn missense variant moderate contig741 4416852

IGV: Start, Jump

C/T
NGS:
0.002
C90:
0.000
THCAS c.968G>A p.Ser323Asn missense variant moderate contig741 4416860

IGV: Start, Jump

C/T
NGS:
0.000
C90:
0.000

Variants (Select Genes of Interest)
PHL-2 c.2756A>C p.Glu919Ala missense variant moderate contig2621 342799

IGV: Start, Jump

A/C
NGS:
0.064
C90:
0.675
PHL-2 c.2783G>A p.Ser928Asn missense variant moderate contig2621 342826

IGV: Start, Jump

G/A
NGS:
0.107
C90:
0.890
PHL-2 c.2830A>G p.Asn944Asp missense variant moderate contig2621 342873

IGV: Start, Jump

A/G
NGS:
0.018
C90:
0.000
PHL-2 c.3209A>G p.Gln1070Arg missense variant moderate contig2621 343252

IGV: Start, Jump

A/G
NGS:
0.103
C90:
0.885
PHL-2 c.3467A>G p.Gln1156Arg missense variant moderate contig2621 343510

IGV: Start, Jump

A/G
NGS:
0.064
C90:
0.713
PHL-2 c.3552delG p.Lys1185fs frameshift variant high contig2621 343593

IGV: Start, Jump

CG/C
NGS:
0.004
C90:
0.000
AAE1-1

UniProt

c.701C>G p.Ala234Gly missense variant moderate contig606 3243570

IGV: Start, Jump

G/C
NGS:
0.000
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
DXR-2

UniProt

c.431C>G p.Ala144Gly missense variant moderate contig380 287760

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.550
ELF3

UniProt

c.358G>A p.Gly120Arg missense variant moderate contig97 242064

IGV: Start, Jump

G/A
NGS:
0.099
C90:
0.493
ELF3

UniProt

c.520A>C p.Asn174His missense variant moderate contig97 242226

IGV: Start, Jump

A/C
NGS:
0.094
C90:
0.502
ELF3

UniProt

c.812G>C p.Gly271Ala missense variant moderate contig97 242518

IGV: Start, Jump

G/C
NGS:
0.114
C90:
0.938
ELF3

UniProt

c.1630A>G p.Thr544Ala missense variant moderate contig97 244461

IGV: Start, Jump

A/G
NGS:
0.103
C90:
0.545
ELF3

UniProt

c.2141C>G p.Pro714Arg missense variant moderate contig97 244972

IGV: Start, Jump

C/G
NGS:
0.088
C90:
0.335
ELF3

UniProt

c.2198G>T p.Arg733Leu missense variant moderate contig97 245029

IGV: Start, Jump

G/T
NGS:
0.125
C90:
0.531
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000
AAE1-2

UniProt

c.884C>T p.Thr295Ile missense variant moderate contig81 209846

IGV: Start, Jump

C/T
NGS:
0.042
C90:
0.000
PHL-1

UniProt

c.3417_3420delCCAA p.Gln1140fs frameshift variant high contig1439 1485914

IGV: Start, Jump

TTTGG/T
NGS:
0.000
C90:
0.000
HDS-1

UniProt

c.1378G>A p.Val460Ile missense variant moderate contig1891 886370

IGV: Start, Jump

C/T
NGS:
0.167
C90:
0.000
FLD

UniProt

c.2981T>C p.Met994Thr missense variant moderate contig1450 2044012

IGV: Start, Jump

A/G
NGS:
0.064
C90:
0.478
FLD

UniProt

c.2964C>A p.Asp988Glu missense variant moderate contig1450 2044029

IGV: Start, Jump

G/T
NGS:
0.057
C90:
0.464
AAE1-3

UniProt

c.659G>A p.Arg220Gln missense variant moderate contig976 1083195

IGV: Start, Jump

C/T
NGS:
0.077
C90:
0.000
AAE1-3

UniProt

c.634G>C p.Gly212Arg missense variant moderate contig976 1083220

IGV: Start, Jump

C/G
NGS:
0.116
C90:
0.000
AAE1-3

UniProt

c.199A>G p.Asn67Asp missense variant moderate contig976 1083876

IGV: Start, Jump

T/C
NGS:
0.079
C90:
0.000
AAE1-3

UniProt

c.188A>G p.Asn63Ser missense variant moderate contig976 1083887

IGV: Start, Jump

T/C
NGS:
0.077
C90:
0.000
PIE1-1

UniProt

c.1222C>G p.Gln408Glu missense variant moderate contig1225 2281482

IGV: Start, Jump

C/G
NGS:
0.096
C90:
0.852
PKSB-3

UniProt

c.1853A>T p.Lys618Met missense variant moderate contig93 3339960

IGV: Start, Jump

A/T
NGS:
0.000
C90:
0.000
PKSB-3

UniProt

c.1861C>A p.Gln621Lys missense variant moderate contig93 3339968

IGV: Start, Jump

C/A
NGS:
0.000
C90:
0.000
PKSB-3

UniProt

c.1901C>G p.Ala634Gly missense variant moderate contig93 3340008

IGV: Start, Jump

C/G
NGS:
0.059
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
closely related moderately related distantly related
  1. 0.249 Purple Urkle (RSP12890)
  2. 0.251 Eucalyptus (RSP12803)
  3. 0.257 Rootbeer Rolex 50 (RSP12645)
  4. 0.264 Gorilla Cookies (RSP11231)
  5. 0.266 Super Runtz (RSP12810)
  6. 0.267 Cherry Lime Runtz (RSP12486)
  7. 0.272 Kimbo Slice (RSP10997)
  8. 0.280 RKM-2018-026 (RSP11118)
  9. 0.286 Garlic (RSP11341)
  10. 0.287 Hermaphrodite ResearchSample2 (RSP11050)
  11. 0.288 Hermaphrodite ResearchSample2 (RSP11043)
  12. 0.289 Original Sour Diesel (RSP12902)
  13. 0.290 Old Family Purple (RSP12098)
  14. 0.293 AJ Sour Diesel (RSP12903)
  15. 0.293 Deadhead OG (RSP11463)
  16. 0.294 SourD (RSP12092)
  17. 0.295 Grape Stomper (RSP11180)
  18. 0.297 Skywalker OG (RSP10837)
  19. 0.298 Miss X (RSP10999)
  20. 0.298 Blueberry Cheesecake (RSP10680)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.465 Chematonic Cannatonic x Chemdawg (RSP11394)
  2. 0.449 Cherry Blossom (RSP11306)
  3. 0.447 Cherry Blossom (RSP11318)
  4. 0.444 Tanao Sri 46 (RSP11486)
  5. 0.442 Cherry Blossom (RSP11329)
  6. 0.440 Cherry Blossom (RSP11325)
  7. 0.436 Cold Weather Cherry (RSP11414)
  8. 0.435 Escape Velocity (RSP11165)
  9. 0.434 Cherry Blossom (RSP11322)
  10. 0.433 Cherry Blossom (RSP11323)
  11. 0.432 Cherry Blossom (RSP11301)
  12. 0.430 Cherry Blossom (RSP11300)
  13. 0.428 Dave Pineapple (RSP11626)
  14. 0.428 AVIDEKEL 2 0 (RSP11174)
  15. 0.427 JL 2 (RSP11076)
  16. 0.427 Cherry Blossom (RSP11326)
  17. 0.426 Ringo s Gift Katie s Cut (RSP11624)
  18. 0.425 Super Silver Haze (RSP12736)
  19. 0.425 Wife (RSP11148)
  20. 0.424 RKM-2018-001 (RSP11092)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347282
Overlapping SNPs:
77
Concordance:
44

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495243
Overlapping SNPs:
5
Concordance:
5

Blockchain Registration Information

Transaction ID
d499c9af7b21b3b29adc2378cb5a69d54786c7243e5a3e33ff3068347a02de7b
Stamping Certificate
Download PDF (39.6 KB)
SHASUM Hash
d391bbaf98131dc6056d6ca142658660f03316d042f4cc5126c74f2832c96c9f
QR code for RSP12899

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