Advanced Strain Search

Jamaican Lion

RSP 12917

Grower: kevin McKernan

General Information

Sample Name
JL-Fem-Seed-Root
Accession Date
September 14, 2023
Reported Plant Sex
Female
Microbiome
Krona Plot

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type II

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.42%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0088
male female RSP12917

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
PKSG-4b

UniProt

c.316+2T>A splice donor variant & intron variant high contig700 2723818

IGV: Start, Jump

A/T
NGS:
0.070
C90:
0.689
PKSG-4b

UniProt

c.229G>A p.Gly77Ser missense variant moderate contig700 2724206

IGV: Start, Jump

C/T
NGS:
0.042
C90:
0.000
PKSG-4b

UniProt

c.216G>C p.Leu72Phe missense variant moderate contig700 2724219

IGV: Start, Jump

C/G
NGS:
0.044
C90:
0.000
PKSG-4b

UniProt

c.206T>C p.Leu69Ser missense variant moderate contig700 2724229

IGV: Start, Jump

A/G
NGS:
0.044
C90:
0.000
FAD2-2

UniProt

c.161T>A p.Leu54His missense variant moderate contig83 1803208

IGV: Start, Jump

A/T
NGS:
0.156
C90:
0.000
FAD2-2

UniProt

c.154G>A p.Val52Ile missense variant moderate contig83 1803215

IGV: Start, Jump

C/T
NGS:
0.022
C90:
0.000
FAD2-2

UniProt

c.62C>T p.Pro21Leu missense variant moderate contig83 1803307

IGV: Start, Jump

G/A
NGS:
0.042
C90:
0.000
FAD2-2

UniProt

c.23G>A p.Ser8Asn missense variant moderate contig83 1803346

IGV: Start, Jump

C/T
NGS:
0.009
C90:
0.000
AAE1-2

UniProt

c.331A>G p.Asn111Asp missense variant moderate contig81 209293

IGV: Start, Jump

A/G
NGS:
0.123
C90:
0.000
PHL-1

UniProt

c.2651C>T p.Ala884Val missense variant moderate contig1439 1487146

IGV: Start, Jump

G/A
NGS:
0.044
C90:
0.622
PHL-1

UniProt

c.2623A>G p.Thr875Ala missense variant moderate contig1439 1487174

IGV: Start, Jump

T/C
NGS:
0.123
C90:
0.000
PHL-1

UniProt

c.2561A>T p.Asn854Ile missense variant moderate contig1439 1487236

IGV: Start, Jump

T/A
NGS:
0.046
C90:
0.612
PHL-1

UniProt

c.2551A>G p.Thr851Ala missense variant moderate contig1439 1487246

IGV: Start, Jump

T/C
NGS:
0.116
C90:
0.890
PHL-1

UniProt

c.1387A>G p.Thr463Ala missense variant moderate contig1439 1489811

IGV: Start, Jump

T/C
NGS:
0.107
C90:
0.904
TFL1

UniProt

c.302-1G>A splice acceptor variant & intron variant high contig1636 520616

IGV: Start, Jump

C/T
NGS:
0.103
C90:
0.794
TFL1

UniProt

c.47_48dupAT p.Val17fs frameshift variant high contig1636 521258

IGV: Start, Jump

C/CAT
NGS:
0.026
C90:
0.211
HDS-1

UniProt

c.35G>A p.Cys12Tyr missense variant moderate contig1891 889357

IGV: Start, Jump

C/T
NGS:
0.094
C90:
0.646
AAE1-3

UniProt

c.667G>A p.Val223Ile missense variant moderate contig976 1083187

IGV: Start, Jump

C/T
NGS:
0.048
C90:
0.000
AAE1-3

UniProt

c.634G>C p.Gly212Arg missense variant moderate contig976 1083220

IGV: Start, Jump

C/G
NGS:
0.116
C90:
0.000
AAE1-3

UniProt

c.475G>A p.Gly159Arg missense variant moderate contig976 1083550

IGV: Start, Jump

C/T
NGS:
0.048
C90:
0.000
AAE1-3

UniProt

c.416T>C p.Leu139Pro missense variant moderate contig976 1083609

IGV: Start, Jump

A/G
NGS:
0.061
C90:
0.000
AAE1-3

UniProt

c.382T>C p.Tyr128His missense variant moderate contig976 1083643

IGV: Start, Jump

A/G
NGS:
0.072
C90:
0.000
AAE1-3

UniProt

c.296C>T p.Pro99Leu missense variant moderate contig976 1083729

IGV: Start, Jump

G/A
NGS:
0.046
C90:
0.000
AAE1-3

UniProt

c.293A>G p.Asp98Gly missense variant moderate contig976 1083732

IGV: Start, Jump

T/C
NGS:
0.068
C90:
0.000
AAE1-3

UniProt

c.284A>T p.Glu95Val missense variant moderate contig976 1083741

IGV: Start, Jump

T/A
NGS:
0.053
C90:
0.000
AAE1-3

UniProt

c.181G>A p.Val61Ile missense variant moderate contig976 1083894

IGV: Start, Jump

C/T
NGS:
0.055
C90:
0.000
AAE1-3

UniProt

c.167A>G p.Glu56Gly missense variant moderate contig976 1083908

IGV: Start, Jump

T/C
NGS:
0.070
C90:
0.000
AAE1-3

UniProt

c.125A>G p.Glu42Gly missense variant moderate contig976 1083950

IGV: Start, Jump

T/C
NGS:
0.064
C90:
0.000
AAE1-3

UniProt

c.79A>G p.Thr27Ala missense variant moderate contig976 1083996

IGV: Start, Jump

T/C
NGS:
0.068
C90:
0.000
AAE1-3

UniProt

c.52G>A p.Gly18Ser missense variant moderate contig976 1084023

IGV: Start, Jump

C/T
NGS:
0.064
C90:
0.000
AAE1-3

UniProt

c.3G>A p.Met1? start lost high contig976 1084072

IGV: Start, Jump

C/T
NGS:
0.046
C90:
0.416
GGR

UniProt

c.704A>T p.His235Leu missense variant moderate contig2282 549696

IGV: Start, Jump

A/T
NGS:
0.121
C90:
0.000
GGR

UniProt

c.810A>T p.Glu270Asp missense variant moderate contig2282 549802

IGV: Start, Jump

A/T
NGS:
0.024
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
closely related moderately related distantly related
  1. 0.013 JL 3rd Gen Mother (RSP11197)
  2. 0.014 JL yellow (RSP11075)
  3. 0.014 JL 3rd Gen Mother (RSP11214)
  4. 0.043 Jamaican Lion (RSP12916)
  5. 0.065 Jamaican Lion (RSP12915)
  6. 0.151 JL 4th Gen 1 (RSP11193)
  7. 0.175 JL 4th Gen 5 (RSP11199)
  8. 0.177 JL 4th Gen 2 (RSP11194)
  9. 0.184 JL 4th Gen 6 (RSP11200)
  10. 0.185 JL 4th Gen 4 (RSP11198)
  11. 0.186 JL 4th Gen 3 (RSP11195)
  12. 0.212 Original Jamaican Lions (RSP11127)
  13. 0.228 JL x NSPM1 4 (RSP11482)
  14. 0.236 JL X NSPM1 12 (RSP11472)
  15. 0.247 JL 4th Gen 7 (RSP11153)
  16. 0.255 Jamaican Lion (RSP12919)
  17. 0.256 Jamaican Lion (RSP12920)
  18. 0.257 Jamaican Lion (RSP12918)
  19. 0.268 JL X NSPM1 8 (RSP11470)
  20. 0.273 JL Tent 4 (RSP11491)

Nearest genetic relatives (Base Tree)

0 0.092 0.183 0.275 0.367
closely related moderately related distantly related
  1. 0.015 JL yellow (RSP11075)
  2. 0.306 Blue Dream (RSP11033)
  3. 0.307 RKM-2018-006 (RSP11097)
  4. 0.309 Sour Raspberry (RSP10551)
  5. 0.312 UP Sunrise (RSP10989)
  6. 0.314 CST (RSP11002)
  7. 0.316 Italian Kiss (RSP11034)
  8. 0.318 RKM-2018-023 (RSP11115)
  9. 0.329 RKM-2018-027 (RSP11119)
  10. 0.341 Kimbo Slice (RSP10997)
  11. 0.343 Queen Jesus (RSP10105)
  12. 0.347 Skunk 18 (RSP11038)
  13. 0.348 Golden Goat 2 (RSP10991)
  14. 0.353 Gold Cracker (RSP11048)
  15. 0.356 Tygra (RSP10667)
  16. 0.358 Hermaphrodite Research Sample1 (RSP11049)
  17. 0.360 Durban Poison (RSP11014)
  18. 0.361 Blueberry Cheesecake (RSP10680)
  19. 0.362 RKM-2018-009 (RSP11100)
  20. 0.362 Black Beauty (RSP11035)

Most genetically distant strains (All Samples)

0 0.142 0.283 0.425 0.567
closely related moderately related distantly related
  1. 0.551 Purple Urkle (RSP12890)
  2. 0.533 GMO x Poison Momosa (RSP12626)
  3. 0.526 JL Cross 14 (RSP11515)
  4. 0.516 BagSeed (RSP12627)
  5. 0.516 JL Cross 6 (RSP11507)
  6. 0.510 Red Eye OG (RSP11190)
  7. 0.507 CS (RSP11208)
  8. 0.504 80E (RSP11213)
  9. 0.504 Fatso (RSP11741)
  10. 0.504 Cherry Blossom (RSP11308)
  11. 0.504 Cherry Blossom (RSP11335)
  12. 0.503 Deadhead OG (RSP11463)
  13. 0.501 Feral (RSP11205)
  14. 0.500 Cherry Blossom (RSP11333)
  15. 0.497 CHEM4 (RSP12090)
  16. 0.495 80E (RSP11211)
  17. 0.494 80E (RSP11212)
  18. 0.492 Wedding Cake x MAC (RSP11464)
  19. 0.491 Cherry Blossom (RSP11311)
  20. 0.486 Absolute OG (RSP11455)

Most genetically distant strains (Base Tree)

0 0.125 0.250 0.375 0.500
closely related moderately related distantly related
  1. 0.474 Cbot-2019-005 (RSP11133)
  2. 0.448 RKM-2018-002 (RSP11093)
  3. 0.443 Skywalker OG (RSP10837)
  4. 0.440 Cherry (RSP11142)
  5. 0.439 Kush Hemp E1 (RSP11128)
  6. 0.424 RKM-2018-026 (RSP11118)
  7. 0.423 Cherry (RSP11143)
  8. 0.421 RKM-2018-034 (RSP11126)
  9. 0.421 RKM-2018-019 (RSP11111)
  10. 0.407 Santhica27 (RSP11047)
  11. 0.406 USO 31 (RSP10981)
  12. 0.400 Futura 75 (RSP10664)
  13. 0.399 RKM-2018-022 (RSP11114)
  14. 0.398 RKM-2018-032 (RSP11124)
  15. 0.397 Monoica (RSP10241)
  16. 0.395 Pie Hoe (RSP11073)
  17. 0.394 Fedora 17 (RSP10661)
  18. 0.393 The Gift (RSP10988)
  19. 0.392 Carmagnola (RSP11037)
  20. 0.392 Feral (RSP10890)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347024
Overlapping SNPs:
96
Concordance:
54

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495202
Overlapping SNPs:
1
Concordance:
1

Blockchain Registration Information

Transaction ID
6cbca979e9c46f0202dd75f0a3cfd67f1704290fb881c2891defb944bec93aff
Stamping Certificate
Download PDF (39.5 KB)
SHASUM Hash
47c1ebc9e511bf55211700349d65e66ccbd5481676bb86d306d221c63590c4d4
QR code for RSP12917

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