PK

RSP 12926

Grower: Zamir Punja

General Information

Sample Name
PK - roots from veg plant
Accession Date
September 27, 2023
Reported Plant Sex
Female
Microbiome
Krona Plot

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Unknown

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.24%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0274
male female RSP12926

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000

Variants (Select Genes of Interest)

PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
PKSG-4b

UniProt

c.316+2T>A splice donor variant & intron variant high contig700 2723818

IGV: Start, Jump

A/T
NGS:
0.070
C90:
0.689
PKSG-4b

UniProt

c.229G>A p.Gly77Ser missense variant moderate contig700 2724206

IGV: Start, Jump

C/T
NGS:
0.042
C90:
0.000
PKSG-4b

UniProt

c.216G>C p.Leu72Phe missense variant moderate contig700 2724219

IGV: Start, Jump

C/G
NGS:
0.044
C90:
0.000
PKSG-4b

UniProt

c.206T>C p.Leu69Ser missense variant moderate contig700 2724229

IGV: Start, Jump

A/G
NGS:
0.044
C90:
0.000
DXR-1

UniProt

c.358-3_358-2delCA splice acceptor variant & splice region variant & intron variant high contig380 234463

IGV: Start, Jump

CTG/C
NGS:
0.000
C90:
0.000
DXR-2

UniProt

c.431C>G p.Ala144Gly missense variant moderate contig380 287760

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.550
ELF3

UniProt

c.358G>A p.Gly120Arg missense variant moderate contig97 242064

IGV: Start, Jump

G/A
NGS:
0.099
C90:
0.493
ELF3

UniProt

c.772A>G p.Ser258Gly missense variant moderate contig97 242478

IGV: Start, Jump

A/G
NGS:
0.112
C90:
0.000
ELF3

UniProt

c.812G>C p.Gly271Ala missense variant moderate contig97 242518

IGV: Start, Jump

G/C
NGS:
0.114
C90:
0.938
ELF3

UniProt

c.1230-2_1230-1delAG splice acceptor variant & intron variant high contig97 243676

IGV: Start, Jump

TAG/T
NGS:
0.088
C90:
0.450
ELF3

UniProt

c.1466G>A p.Ser489Asn missense variant moderate contig97 244297

IGV: Start, Jump

G/A
NGS:
0.123
C90:
0.000
ELF3

UniProt

c.1630A>G p.Thr544Ala missense variant moderate contig97 244461

IGV: Start, Jump

A/G
NGS:
0.103
C90:
0.545
ELF3

UniProt

c.1803_1805delTCA p.His601del disruptive inframe deletion moderate contig97 244625

IGV: Start, Jump

ACAT/A
NGS:
0.092
C90:
0.000
ELF3

UniProt

c.1966C>G p.Pro656Ala missense variant moderate contig97 244797

IGV: Start, Jump

C/G
NGS:
0.123
C90:
0.632
ELF3

UniProt

c.2141C>G p.Pro714Arg missense variant moderate contig97 244972

IGV: Start, Jump

C/G
NGS:
0.088
C90:
0.335
ELF3

UniProt

c.2198G>T p.Arg733Leu missense variant moderate contig97 245029

IGV: Start, Jump

G/T
NGS:
0.125
C90:
0.531
aPT4

UniProt

c.16G>A p.Val6Ile missense variant moderate contig121 2828672

IGV: Start, Jump

G/A
NGS:
0.158
C90:
0.000
aPT4

UniProt

c.35A>C p.Gln12Pro missense variant moderate contig121 2828691

IGV: Start, Jump

A/C
NGS:
0.075
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
AAE1-2

UniProt

c.331A>G p.Asn111Asp missense variant moderate contig81 209293

IGV: Start, Jump

A/G
NGS:
0.123
C90:
0.000
AAE1-2

UniProt

c.884C>T p.Thr295Ile missense variant moderate contig81 209846

IGV: Start, Jump

C/T
NGS:
0.042
C90:
0.000
AAE1-2

UniProt

c.950_954delACCAA p.Asp317fs frameshift variant high contig81 209911

IGV: Start, Jump

GACCAA/G
NGS:
0.004
C90:
0.000
AAE1-2

UniProt

c.955_956insT p.Arg319fs frameshift variant high contig81 209917

IGV: Start, Jump

C/CT
NGS:
0.004
C90:
0.000
AAE1-2

UniProt

c.1006A>G p.Lys336Glu missense variant moderate contig81 209968

IGV: Start, Jump

A/G
NGS:
0.116
C90:
0.000
AAE1-2

UniProt

c.1102C>A p.His368Asn missense variant moderate contig81 210064

IGV: Start, Jump

C/A
NGS:
0.033
C90:
0.000
PHL-1

UniProt

c.2623A>G p.Thr875Ala missense variant moderate contig1439 1487174

IGV: Start, Jump

T/C
NGS:
0.123
C90:
0.000
PHL-1

UniProt

c.2551A>G p.Thr851Ala missense variant moderate contig1439 1487246

IGV: Start, Jump

T/C
NGS:
0.116
C90:
0.890
PHL-1

UniProt

c.1387A>G p.Thr463Ala missense variant moderate contig1439 1489811

IGV: Start, Jump

T/C
NGS:
0.107
C90:
0.904
Edestin

UniProt

c.17C>T p.Ser6Leu missense variant moderate contig850 3065273

IGV: Start, Jump

G/A
NGS:
0.011
C90:
0.000
Edestin

UniProt

c.16T>C p.Ser6Pro missense variant moderate contig850 3065274

IGV: Start, Jump

A/G
NGS:
0.059
C90:
0.000
HDS-1

UniProt

c.1618A>G p.Ile540Val missense variant moderate contig1891 885936

IGV: Start, Jump

T/C
NGS:
0.099
C90:
0.861
HDS-1

UniProt

c.1378G>A p.Val460Ile missense variant moderate contig1891 886370

IGV: Start, Jump

C/T
NGS:
0.167
C90:
0.000
HDS-1

UniProt

c.56C>G p.Ala19Gly missense variant moderate contig1891 889336

IGV: Start, Jump

G/C
NGS:
0.125
C90:
0.943
HDS-1

UniProt

c.35G>A p.Cys12Tyr missense variant moderate contig1891 889357

IGV: Start, Jump

C/T
NGS:
0.094
C90:
0.646
PIE1-2

UniProt

c.6773T>C p.Leu2258Ser missense variant moderate contig1460 1184314

IGV: Start, Jump

A/G
NGS:
0.046
C90:
0.675
PIE1-2

UniProt

c.5932A>G p.Ile1978Val missense variant moderate contig1460 1185552

IGV: Start, Jump

T/C
NGS:
0.061
C90:
0.268
PIE1-2

UniProt

c.1289A>G p.Asp430Gly missense variant moderate contig1460 1192109

IGV: Start, Jump

T/C
NGS:
0.079
C90:
0.000
PIE1-2

UniProt

c.710C>T p.Pro237Leu missense variant moderate contig1460 1193804

IGV: Start, Jump

G/A
NGS:
0.072
C90:
0.866
PIE1-2

UniProt

c.706T>C p.Tyr236His missense variant moderate contig1460 1193808

IGV: Start, Jump

A/G
NGS:
0.059
C90:
0.737
EMF2

UniProt

c.1772A>G p.Gln591Arg missense variant moderate contig954 3059929

IGV: Start, Jump

A/G
NGS:
0.092
C90:
0.876
FT

UniProt

c.240C>G p.Asn80Lys missense variant moderate contig1561 3124664

IGV: Start, Jump

C/G
NGS:
0.075
C90:
0.000
FLD

UniProt

c.721C>T p.Pro241Ser missense variant moderate contig1450 2047313

IGV: Start, Jump

G/A
NGS:
0.000
C90:
0.000
AAE1-3

UniProt

c.722G>A p.Arg241Lys missense variant moderate contig976 1083132

IGV: Start, Jump

C/T
NGS:
0.070
C90:
0.000
AAE1-3

UniProt

c.188A>G p.Asn63Ser missense variant moderate contig976 1083887

IGV: Start, Jump

T/C
NGS:
0.077
C90:
0.000
PIE1-1

UniProt

c.1222C>G p.Gln408Glu missense variant moderate contig1225 2281482

IGV: Start, Jump

C/G
NGS:
0.096
C90:
0.852
GGR

UniProt

c.704A>T p.His235Leu missense variant moderate contig2282 549696

IGV: Start, Jump

A/T
NGS:
0.121
C90:
0.000
PKSB-3

UniProt

c.1652A>G p.Glu551Gly missense variant moderate contig93 3339759

IGV: Start, Jump

A/G
NGS:
0.088
C90:
0.000
PKSB-3

UniProt

c.1901C>G p.Ala634Gly missense variant moderate contig93 3340008

IGV: Start, Jump

C/G
NGS:
0.059
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
clone distance sibling distance more distant
  1. 0.047 PK (RSP12932)
  2. 0.122 The Gift (RSP10988)
  3. 0.129 RKM-2018-008 (RSP11099)
  4. 0.154 RKM-2018-013 (RSP11104)
  5. 0.155 Rugburn OG (RSP11353)
  6. 0.155 Skywalker OG (RSP10837)
  7. 0.158 SFVxTK (RSP11072)
  8. 0.160 Absolute OG (RSP11455)
  9. 0.163 RKM-2018-012 (RSP11103)
  10. 0.178 Red Eye OG (RSP11190)
  11. 0.178 Deadhead OG (RSP11463)
  12. 0.179 East side OG (RSP12089)
  13. 0.184 Pure Power Plant (RSP11265)
  14. 0.186 RKM-2018-021 (RSP11113)
  15. 0.186 RKM-2018-032 (RSP11124)
  16. 0.188 SourD (RSP12092)
  17. 0.188 RKM-2018-017 (RSP11109)
  18. 0.190 Bueller F3 (RSP12503)
  19. 0.191 501st OG (RSP11241)
  20. 0.191 Triangle Kush x Square Wave BX (RSP12100)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.128 The Gift (RSP10988)
  2. 0.153 Skywalker OG (RSP10837)
  3. 0.187 RKM-2018-032 (RSP11124)
  4. 0.193 RKM-2018-026 (RSP11118)
  5. 0.229 RKM-2018-034 (RSP11126)
  6. 0.231 Pie Hoe (RSP11073)
  7. 0.234 Kimbo Slice (RSP10997)
  8. 0.246 RKM-2018-002 (RSP11093)
  9. 0.248 RKM-2018-004 (RSP11096)
  10. 0.259 Kush Hemp E1 (RSP11128)
  11. 0.272 RKM-2018-033 (RSP11125)
  12. 0.279 RKM-2018-020 (RSP11112)
  13. 0.282 Hermaphrodite ResearchSample2 (RSP11050)
  14. 0.284 Blueberry Cheesecake (RSP10684)
  15. 0.296 Hermaphrodite Research Sample1 (RSP11049)
  16. 0.299 Blueberry Cheesecake (RSP10680)
  17. 0.309 Liberty Haze (RSP11000)
  18. 0.324 Golden Goat 2 (RSP10991)
  19. 0.327 RKM-2018-009 (RSP11100)
  20. 0.327 Gold Cracker (RSP11048)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.487 Unknown- Cherry Wine - 001 (RSP11268)
  2. 0.476 Cherry Blossom (RSP11318)
  3. 0.472 Cherry Blossom (RSP11323)
  4. 0.468 Cherry Blossom (RSP11301)
  5. 0.464 Tanao Sri 46 (RSP11486)
  6. 0.464 Unknown- Cherry Wine - 003 (RSP11270)
  7. 0.461 Brunswick High (RSP11164)
  8. 0.461 Unknown- Cherry Wine - 002 (RSP11269)
  9. 0.452 Cherry Blossom (RSP11328)
  10. 0.451 Cherry Blossom (RSP11298)
  11. 0.450 Cherry Blossom (RSP11300)
  12. 0.449 Cherry Blossom (RSP11312)
  13. 0.448 80E (RSP11213)
  14. 0.444 Cherry Blossom (RSP11274)
  15. 0.442 Jamaican Lion (RSP12916)
  16. 0.442 Cherry Blossom (RSP11309)
  17. 0.437 Avidekel 05MAY2017 (RSP10938)
  18. 0.437 Northern Skunk (RSP11456)
  19. 0.436 Wife (RSP11148)
  20. 0.434 Jamaican Lion (RSP12913)

Most genetically distant strains (Base Tree)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.436 JL yellow (RSP11075)
  2. 0.417 Cherry (RSP11142)
  3. 0.407 Cherry (RSP11143)
  4. 0.407 Cbot-2019-004 (RSP11132)
  5. 0.406 RKM-2018-006 (RSP11097)
  6. 0.398 Cbot-2019-005 (RSP11133)
  7. 0.393 Feral (RSP10890)
  8. 0.392 RKM-2018-023 (RSP11115)
  9. 0.389 Monoica (RSP10241)
  10. 0.388 Black Beauty (RSP11035)
  11. 0.387 RKM-2018-031 (RSP11123)
  12. 0.381 Italian Kiss (RSP11034)
  13. 0.380 RKM-2018-028 (RSP11120)
  14. 0.378 RKM-2018-018 (RSP11110)
  15. 0.378 RKM-2018-003 (RSP11094)
  16. 0.377 Carmagnola (RSP11037)
  17. 0.375 Lovrin (RSP10658)
  18. 0.375 USO 31 (RSP10981)
  19. 0.375 RKM-2018-022 (RSP11114)
  20. 0.373 Cbot-2019-001 (RSP11129)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448505
Overlapping SNPs:
96
Concordance:
72

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495250
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
35fe90022ba74ee5a2cd72a92da36fc707d6d34a392d213714e12e135cc4f557
Stamping Certificate
Download PDF (39.6 KB)
SHASUM Hash
3b9ebc8a7ffe04f0c1d303ce3021f940f70c6204f3f45ffb3581fa7c0faec591
QR code for RSP12926

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