UC_74
SRR 14419674
General Information
- Accession Date
- April 18, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
- THC + THCA
- 0.0011%
- CBD + CBDA
- 0.0378%
- THCV + THCVA
- n/a
- CBC + CBCA
- 0.%
- CBG + CBGA
- 0.0009%
- CBN + CBNA
- n/a
Terpenoids
- α-Bisabolol
- n/a
- Borneol
- n/a
- Camphene
- 0.0001%
- Carene
- 0.%
- Caryophyllene oxide
- 0.0011%
- β-Caryophyllene
- 0.0014%
- Fenchol
- n/a
- Geraniol
- 0.%
- α-Humulene
- n/a
- Limonene
- n/a
- Linalool
- 0.%
- Myrcene
- n/a
- α-Phellandrene
- n/a
- Terpinolene
- n/a
- α-Terpineol
- n/a
- α-Terpinene
- 0.0002%
- γ-Terpinene
- 0.0001%
- Total Nerolidol
- n/a
- Total Ocimene
- 0.%
- α-Pinene
- 0.0043%
- β-Pinene
- n/a
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
GPPs1 | c.744C>G | p.Asp248Glu | missense variant | moderate | contig676 | 168993 | C/G |
|
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.2564T>A | p.Phe855Tyr | missense variant | moderate | contig2621 | 342607 | T/A | |
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PHL-2 | c.2624C>T | p.Ser875Phe | missense variant | moderate | contig2621 | 342667 | C/T | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.2830A>C | p.Asn944His | missense variant | moderate | contig2621 | 342873 | A/C |
|
PHL-2 | c.2933G>T | p.Arg978Leu | missense variant | moderate | contig2621 | 342976 | G/T | |
PHL-2 | c.2936T>G | p.Val979Gly | missense variant | moderate | contig2621 | 342979 | T/G |
|
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PHL-2 | c.3467A>G | p.Gln1156Arg | missense variant | moderate | contig2621 | 343510 | A/G | |
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
PKSG-4b | c.229G>A | p.Gly77Ser | missense variant | moderate | contig700 | 2724206 | C/T |
|
PKSG-4b | c.216G>C | p.Leu72Phe | missense variant | moderate | contig700 | 2724219 | C/G |
|
PKSG-4b | c.206T>C | p.Leu69Ser | missense variant | moderate | contig700 | 2724229 | A/G |
|
OAC-1 | c.260C>G | p.Ser87Cys | missense variant | moderate | contig931 | 118104 | G/C |
|
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
FAD2-2 | c.127C>T | p.Arg43* | stop gained | high | contig83 | 1803242 | G/A |
|
FAD2-2 | c.110C>T | p.Ala37Val | missense variant | moderate | contig83 | 1803259 | G/A |
|
FAD2-2 | c.75C>A | p.His25Gln | missense variant | moderate | contig83 | 1803294 | G/T |
|
FAD2-2 | c.62C>T | p.Pro21Leu | missense variant | moderate | contig83 | 1803307 | G/A |
|
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 | c.409C>T | p.Arg137Cys | missense variant | moderate | contig81 | 209371 | C/T |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
Edestin | c.40G>A | p.Ala14Thr | missense variant | moderate | contig850 | 3065250 | C/T |
|
Edestin | c.17C>T | p.Ser6Leu | missense variant | moderate | contig850 | 3065273 | G/A |
|
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 | c.35G>A | p.Cys12Tyr | missense variant | moderate | contig1891 | 889357 | C/T | |
PIE1-2 | c.6653A>G | p.Asn2218Ser | missense variant | moderate | contig1460 | 1184434 | T/C | |
PIE1-2 | c.2188G>A | p.Ala730Thr | missense variant | moderate | contig1460 | 1189852 | C/T | |
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
FT |
c.413_413+1i |
splice donor variant & intron variant | high | contig1561 | 3126450 | T/TGTATGCA |
|
|
AAE1-3 | c.416T>C | p.Leu139Pro | missense variant | moderate | contig976 | 1083609 | A/G |
|
AAE1-3 | c.403G>T | p.Asp135Tyr | missense variant | moderate | contig976 | 1083622 | C/A |
|
AAE1-3 | c.382T>C | p.Tyr128His | missense variant | moderate | contig976 | 1083643 | A/G |
|
AAE1-3 | c.367C>T | p.Arg123Trp | missense variant | moderate | contig976 | 1083658 | G/A |
|
AAE1-3 | c.293A>G | p.Asp98Gly | missense variant | moderate | contig976 | 1083732 | T/C |
|
AAE1-3 | c.267T>G | p.His89Gln | missense variant | moderate | contig976 | 1083758 | A/C |
|
AAE1-3 | c.224C>T | p.Pro75Leu | missense variant | moderate | contig976 | 1083851 | G/A |
|
AAE1-3 | c.208G>C | p.Ala70Pro | missense variant | moderate | contig976 | 1083867 | C/G |
|
AAE1-3 | c.167A>G | p.Glu56Gly | missense variant | moderate | contig976 | 1083908 | T/C |
|
AAE1-3 | c.154G>A | p.Val52Ile | missense variant | moderate | contig976 | 1083921 | C/T |
|
AAE1-3 | c.101A>G | p.Tyr34Cys | missense variant | moderate | contig976 | 1083974 | T/C |
|
AAE1-3 | c.79A>G | p.Thr27Ala | missense variant | moderate | contig976 | 1083996 | T/C |
|
PIE1-1 | c.1222C>G | p.Gln408Glu | missense variant | moderate | contig1225 | 2281482 | C/G | |
GGR | c.376G>C | p.Glu126Gln | missense variant | moderate | contig2282 | 549368 | G/C | |
GGR | c.382C>T | p.Leu128Phe | missense variant | moderate | contig2282 | 549374 | C/T |
|
GGR | c.456T>A | p.His152Gln | missense variant | moderate | contig2282 | 549448 | T/A |
|
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
GGR | c.581C>T | p.Ala194Val | missense variant | moderate | contig2282 | 549573 | C/T | |
PKSB-3 | c.1490C>T | p.Ala497Val | missense variant | moderate | contig93 | 3339597 | C/T |
|
PKSB-3 | c.1848G>A | p.Met616Ile | missense variant | moderate | contig93 | 3339955 | G/A |
|
Nearest genetic relatives (All Samples)
- 0.092 VIR 449 - Szegedi 9 (SRR14708213)
- 0.097 B52 (SRR14708255)
- 0.103 R2in135 (SRR14708221)
- 0.103 R1in136 (SRR14708237)
- 0.103 Kompolti (SRR14708277)
- 0.114 Wild Thailand (SRR14708216)
- 0.115 R2in135 (SRR14708236)
- 0.118 Northern Light (SRR14708265)
- 0.121 VIR 493 - Glukhovskaja 10 Zheltostebel'naja (SRR14708230)
- 0.121 VIR 469 (SRR14708243)
- 0.121 Alpine Rocket (SRR14708266)
- 0.125 PCL1 (SRR14708246)
- 0.125 Hawaii Maui Waui (SRR14708262)
- 0.128 XGL2 (SRR14708208)
- 0.129 VIR 201 (SRR14708232)
- 0.130 VIR 223 - Bernburgskaya Odnodomnaya - bm (SRR14708217)
- 0.130 VIR 483 (SRR14708238)
- 0.130 IUL3 (SRR14708252)
- 0.131 Cherry Blossom (RSP11316)
- 0.132 Mexican Sativa (SRR14708263)
Nearest genetic relatives (Base Tree)
- 0.193 Liberty Haze (RSP11000)
- 0.205 Blueberry Cheesecake (RSP10684)
- 0.216 KYRG-11 (RSP11051)
- 0.250 Blueberry Cheesecake (RSP10672)
- 0.257 Monoica (RSP10241)
- 0.260 RKM-2018-020 (RSP11112)
- 0.263 Recon (RSP10755)
- 0.265 Futura 75 (RSP10664)
- 0.267 Kyrgyz Gold (RSP11054)
- 0.269 Durban Poison (RSP11014)
- 0.272 Tisza (RSP10659)
- 0.275 RKM-2018-005 (RSP11096)
- 0.278 Golden Goat 2 (RSP10991)
- 0.281 Kush Hemp E1 (RSP11128)
- 0.283 Blueberry Cheesecake (RSP10680)
- 0.285 RKM-2018-027 (RSP11119)
- 0.285 USO 31 (RSP10981)
- 0.286 RKM-2018-032 (RSP11124)
- 0.286 Cbot-2019-004 (RSP11132)
- 0.287 The Gift (RSP10988)
Most genetically distant strains (All Samples)
- 0.430 JL yellow (RSP11075)
- 0.421 JL 3rd Gen Mother (RSP11214)
- 0.419 80E (RSP11213)
- 0.418 80E (RSP11211)
- 0.400 JL 4th Gen 5 (RSP11199)
- 0.383 Chem 91 (RSP11185)
- 0.376 Feral (RSP11206)
- 0.375 Tanao Sri 46 (RSP11486)
- 0.375 Carmagnola (RSP11037)
- 0.372 JL 4th Gen 2 (RSP11194)
- 0.370 Feral (RSP11205)
- 0.366 JL 4th Gen 3 (RSP11195)
- 0.366 JL 3rd Gen Mother (RSP11197)
- 0.364 Squirrel Tail 81 (RSP11622)
- 0.361 Carmagnola (RSP11202)
- 0.360 JL 4th Gen 4 (RSP11198)
- 0.354 Carmagnola (RSP10979)
- 0.353 Carmagnola (RSP10980)
- 0.353 JL 4th Gen 1 (RSP11193)
- 0.352 Tiger Tail 78 (RSP11619)
Most genetically distant strains (Base Tree)
- 0.457 JL yellow (RSP11075)
- 0.377 Carmagnola (RSP11037)
- 0.352 Jiangji (RSP10653)
- 0.350 Italian Kiss (RSP11034)
- 0.344 RKM-2018-026 (RSP11118)
- 0.344 Feral (RSP10890)
- 0.337 Sour Raspberry (RSP10551)
- 0.336 Blue Dream (RSP11033)
- 0.335 RKM-2018-002 (RSP11093)
- 0.335 RKM-2018-018 (RSP11110)
- 0.328 RKM-2018-003 (RSP11094)
- 0.327 UP Sunrise (RSP10989)
- 0.326 Tisza (RSP11044)
- 0.324 Cbot-2019-006 (RSP11134)
- 0.321 RKM-2018-009 (RSP11100)
- 0.321 RKM-2018-028 (RSP11120)
- 0.320 Carmagnola (RSP10979)
- 0.320 CST (RSP11002)
- 0.320 Santhica27 (RSP11047)
- 0.320 Cherry (RSP11143)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 15
- Concordance:
- 14
Blockchain Registration Information
- SHASUM Hash
-
8cc3abe36d735a35
f33c85cc3a193e6e 2def39e9b12866d6 c59312c0d667722b