UC_48
SRR 14419702
General Information
- Accession Date
- April 18, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
- THC + THCA
- 0.0011%
- CBD + CBDA
- 0.0378%
- THCV + THCVA
- n/a
- CBC + CBCA
- 0.%
- CBG + CBGA
- 0.0009%
- CBN + CBNA
- n/a
Terpenoids
- α-Bisabolol
- n/a
- Borneol
- n/a
- Camphene
- 0.0001%
- Carene
- 0.%
- Caryophyllene oxide
- 0.0011%
- β-Caryophyllene
- 0.0014%
- Fenchol
- n/a
- Geraniol
- 0.%
- α-Humulene
- n/a
- Limonene
- n/a
- Linalool
- 0.%
- Myrcene
- n/a
- α-Phellandrene
- n/a
- Terpinolene
- n/a
- α-Terpineol
- n/a
- α-Terpinene
- 0.0002%
- γ-Terpinene
- 0.0001%
- Total Nerolidol
- n/a
- Total Ocimene
- 0.%
- α-Pinene
- 0.0043%
- β-Pinene
- n/a
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
CBDAS | c.221C>G | p.Thr74Ser | missense variant | moderate | contig1772 | 2082447 | C/G | |
CBDAS | c.503A>G | p.Asn168Ser | missense variant | moderate | contig1772 | 2082729 | A/G | |
CBDAS | c.587A>G | p.Asn196Ser | missense variant | moderate | contig1772 | 2082813 | A/G | |
CBDAS | c.1420A>C | p.Lys474Gln | missense variant | moderate | contig1772 | 2083646 | A/C | |
CBDAS | c.1465G>A | p.Gly489Arg | missense variant | moderate | contig1772 | 2083691 | G/A |
|
Variants (Select Genes of Interest)
GPPs1 | c.744C>G | p.Asp248Glu | missense variant | moderate | contig676 | 168993 | C/G |
|
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
EMF1-2 | c.2256A>T | p.Lys752Asn | missense variant | moderate | contig885 | 3142 | A/T |
|
PHL-2 | c.932T>C | p.Leu311Pro | missense variant | moderate | contig2621 | 340210 | T/C | |
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.2564T>A | p.Phe855Tyr | missense variant | moderate | contig2621 | 342607 | T/A | |
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PHL-2 | c.2624C>T | p.Ser875Phe | missense variant | moderate | contig2621 | 342667 | C/T | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.2830A>C | p.Asn944His | missense variant | moderate | contig2621 | 342873 | A/C |
|
PHL-2 | c.2933G>T | p.Arg978Leu | missense variant | moderate | contig2621 | 342976 | G/T | |
PHL-2 | c.2936T>G | p.Val979Gly | missense variant | moderate | contig2621 | 342979 | T/G |
|
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PHL-2 | c.3467A>G | p.Gln1156Arg | missense variant | moderate | contig2621 | 343510 | A/G | |
PKSG-4b |
c.535_545del |
p.Ile179fs | frameshift variant | high | contig700 | 2721127 |
CCCCACTCCAAT |
|
PKSG-4b | c.523C>T | p.His175Tyr | missense variant | moderate | contig700 | 2721150 | G/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b |
c.353_354ins |
p.Gly119fs | frameshift variant | high | contig700 | 2721319 | T/TGG |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
PKSG-4b | c.238T>C | p.Phe80Leu | missense variant | moderate | contig700 | 2724197 | A/G |
|
PKSG-4b | c.229G>A | p.Gly77Ser | missense variant | moderate | contig700 | 2724206 | C/T |
|
PKSG-4b | c.216G>C | p.Leu72Phe | missense variant | moderate | contig700 | 2724219 | C/G |
|
PKSG-4b | c.206T>C | p.Leu69Ser | missense variant | moderate | contig700 | 2724229 | A/G |
|
AAE1-1 | c.752T>C | p.Val251Ala | missense variant | moderate | contig606 | 3243519 | A/G |
|
AAE1-1 | c.750G>A | p.Met250Ile | missense variant | moderate | contig606 | 3243521 | C/T |
|
AAE1-1 | c.749T>C | p.Met250Thr | missense variant | moderate | contig606 | 3243522 | A/G |
|
AAE1-1 | c.706C>A | p.Leu236Ile | missense variant | moderate | contig606 | 3243565 | G/T |
|
AAE1-1 | c.668G>C | p.Ser223Thr | missense variant | moderate | contig606 | 3243603 | C/G |
|
OAC-1 | c.260C>G | p.Ser87Cys | missense variant | moderate | contig931 | 118104 | G/C |
|
ELF3 | c.574A>G | p.Asn192Asp | missense variant | moderate | contig97 | 242280 | A/G | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF5 | c.853C>T | p.Pro285Ser | missense variant | moderate | contig382 | 880715 | C/T | |
aPT1 | c.574A>T | p.Met192Leu | missense variant | moderate | contig121 | 2840182 | A/T |
|
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
Edestin | c.40G>A | p.Ala14Thr | missense variant | moderate | contig850 | 3065250 | C/T |
|
Edestin | c.17C>T | p.Ser6Leu | missense variant | moderate | contig850 | 3065273 | G/A |
|
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.5884G>A | p.Gly1962Ser | missense variant | moderate | contig1460 | 1185715 | C/T | |
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
PIE1-2 | c.1289A>G | p.Asp430Gly | missense variant | moderate | contig1460 | 1192109 | T/C |
|
PIE1-2 | c.710C>T | p.Pro237Leu | missense variant | moderate | contig1460 | 1193804 | G/A | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
EMF1-1 | c.242A>G | p.Lys81Arg | missense variant | moderate | contig883 | 269731 | A/G | |
AAE1-3 | c.267T>G | p.His89Gln | missense variant | moderate | contig976 | 1083758 | A/C |
|
AAE1-3 | c.224C>T | p.Pro75Leu | missense variant | moderate | contig976 | 1083851 | G/A |
|
AAE1-3 | c.208G>C | p.Ala70Pro | missense variant | moderate | contig976 | 1083867 | C/G |
|
AAE1-3 | c.181G>A | p.Val61Ile | missense variant | moderate | contig976 | 1083894 | C/T |
|
AAE1-3 | c.167A>G | p.Glu56Gly | missense variant | moderate | contig976 | 1083908 | T/C |
|
AAE1-3 | c.154G>A | p.Val52Ile | missense variant | moderate | contig976 | 1083921 | C/T |
|
AAE1-3 | c.101A>G | p.Tyr34Cys | missense variant | moderate | contig976 | 1083974 | T/C |
|
AAE1-3 | c.79A>G | p.Thr27Ala | missense variant | moderate | contig976 | 1083996 | T/C |
|
AAE1-3 | c.52G>A | p.Gly18Ser | missense variant | moderate | contig976 | 1084023 | C/T |
|
AAE1-3 | c.12G>A | p.Met4Ile | missense variant | moderate | contig976 | 1084063 | C/T |
|
AAE1-3 | c.11T>C | p.Met4Thr | missense variant | moderate | contig976 | 1084064 | A/G |
|
AAE1-3 | c.3G>A | p.Met1? | start lost | high | contig976 | 1084072 | C/T | |
PIE1-1 | c.1222C>G | p.Gln408Glu | missense variant | moderate | contig1225 | 2281482 | C/G | |
GGR | c.376G>C | p.Glu126Gln | missense variant | moderate | contig2282 | 549368 | G/C | |
GGR | c.382C>T | p.Leu128Phe | missense variant | moderate | contig2282 | 549374 | C/T |
|
GGR | c.456T>A | p.His152Gln | missense variant | moderate | contig2282 | 549448 | T/A |
|
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
GGR | c.581C>T | p.Ala194Val | missense variant | moderate | contig2282 | 549573 | C/T | |
PKSB-3 | c.1203delC | p.Ala402fs | frameshift variant | high | contig93 | 3339308 | GC/G |
|
PKSB-3 | c.1490C>T | p.Ala497Val | missense variant | moderate | contig93 | 3339597 | C/T |
|
PKSB-3 | c.1652A>G | p.Glu551Gly | missense variant | moderate | contig93 | 3339759 | A/G |
|
PKSB-3 | c.1848G>A | p.Met616Ile | missense variant | moderate | contig93 | 3339955 | G/A |
|
Nearest genetic relatives (All Samples)
- 0.089 UC 71 (SRR14419677)
- 0.115 VIR 469 (SRR14708242)
- 0.121 VIR 483 (SRR14708238)
- 0.149 XHC1 (SRR14708212)
- 0.152 Hawaii Maui Waui (SRR14708262)
- 0.156 Electra (RSP11366)
- 0.156 UC 21 (SRR14419861)
- 0.159 VIR 449 - Szegedi 9 (SRR14708213)
- 0.161 PCL1 (SRR14708246)
- 0.167 Wild Thailand (SRR14708216)
- 0.169 Lift (RSP11378)
- 0.170 Carmagnola (RSP10977)
- 0.172 IUL3 (SRR14708252)
- 0.173 Carmagnola (RSP11039)
- 0.173 Triangle Kush x Square Wave BX (RSP12100)
- 0.175 XHC2 (SRR14708210)
- 0.175 SourD (RSP12092)
- 0.177 UC 46 (SRR14419703)
- 0.178 Doug s Varin (RSP11243)
- 0.179 Carmagnola (RSP11037)
Nearest genetic relatives (Base Tree)
- 0.181 Carmagnola (RSP11037)
- 0.185 Blueberry Cheesecake (RSP10684)
- 0.265 Hermaphrodite ResearchSample2 (RSP11050)
- 0.275 Tisza (RSP10659)
- 0.276 Durban Poison (RSP11014)
- 0.279 Kimbo Slice (RSP10997)
- 0.280 Golden Goat 2 (RSP10991)
- 0.290 RKM-2018-027 (RSP11119)
- 0.292 Carmagnola (RSP10979)
- 0.292 RKM-2018-019 (RSP11111)
- 0.293 Hermaphrodite Research Sample1 (RSP11049)
- 0.293 Recon (RSP10755)
- 0.294 RKM-2018-029 (RSP11121)
- 0.295 UP Sunrise (RSP10989)
- 0.299 Cherry (RSP11142)
- 0.301 Sour Raspberry (RSP10551)
- 0.301 Liberty Haze (RSP11000)
- 0.303 CST (RSP11002)
- 0.303 Tisza (RSP11044)
- 0.303 Jiangji (RSP10653)
Most genetically distant strains (All Samples)
- 0.450 80E (RSP11213)
- 0.449 JL 4th Gen 5 (RSP11199)
- 0.447 JL 3rd Gen Father (RSP11196)
- 0.434 JL 4th Gen 6 (RSP11200)
- 0.429 JL 4th Gen 1 (RSP11193)
- 0.427 Skunk 18 (RSP11030)
- 0.426 JL yellow (RSP11075)
- 0.421 JL 3rd Gen Mother (RSP11214)
- 0.418 JL 4th Gen 4 (RSP11198)
- 0.413 JL 4th Gen 3 (RSP11195)
- 0.405 Kush Hemp E1 (RSP11128)
- 0.405 Monoica (RSP10241)
- 0.401 JL 4th Gen 2 (RSP11194)
- 0.398 Cbot-2019-005 (RSP11133)
- 0.398 Skunk 18 (RSP11038)
- 0.397 Feral (RSP10892)
- 0.392 80E (RSP11211)
- 0.383 RKM-2018-026 (RSP11118)
- 0.378 Tanao Sri 46 (RSP11486)
- 0.377 Candy Kush (RSP11492)
Most genetically distant strains (Base Tree)
- 0.441 JL yellow (RSP11075)
- 0.415 Skunk 18 (RSP11038)
- 0.402 Cbot-2019-005 (RSP11133)
- 0.398 RKM-2018-026 (RSP11118)
- 0.397 Monoica (RSP10241)
- 0.388 Kush Hemp E1 (RSP11128)
- 0.387 Cbot-2019-004 (RSP11132)
- 0.360 Lovrin (RSP10658)
- 0.359 QUEEN JESUS (RSP10105)
- 0.351 Black Beauty (RSP11035)
- 0.351 The Gift (RSP10988)
- 0.350 RKM-2018-002 (RSP11093)
- 0.348 Fedora 17 (RSP10661)
- 0.347 RKM-2018-023 (RSP11115)
- 0.346 Blueberry Cheesecake (RSP10672)
- 0.341 KYRG-11 (RSP11051)
- 0.341 Futura 75 (RSP10664)
- 0.340 Cbot-2019-006 (RSP11134)
- 0.339 RKM-2018-033 (RSP11125)
- 0.338 RKM-2018-003 (RSP11094)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 11
- Concordance:
- 10
Blockchain Registration Information
- SHASUM Hash
-
17fe80301ca9ab53
ac7802912058ebe3 fb7070f60398acd3 a00bf56ef23b0914