Chamaeleon
SRR 14708197
General Information
- Sample Name
- NCN
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
GPPs1 | c.896A>G | p.Asn299Ser | missense variant | moderate | contig676 | 169772 | A/G |
|
PHL-2 | c.722G>A | p.Gly241Glu | missense variant | moderate | contig2621 | 339860 | G/A |
|
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PKSG-4b | c.544G>T | p.Gly182Trp | missense variant | moderate | contig700 | 2721129 | C/A |
|
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.338G>A | p.Gly113Glu | missense variant | moderate | contig700 | 2721335 | C/T |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
PKSG-4b |
c.235_239dup |
p.Phe80fs | frameshift variant | high | contig700 | 2724195 | G/GAATCT |
|
PKSG-4b | c.134G>A | p.Arg45Gln | missense variant | moderate | contig700 | 2724301 | C/T |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
DXR-2 | c.1319T>G | p.Ile440Ser | missense variant | moderate | contig380 | 285250 | A/C |
|
DXR-2 | c.431C>G | p.Ala144Gly | missense variant | moderate | contig380 | 287760 | G/C | |
ELF3 | c.757C>T | p.Pro253Ser | missense variant | moderate | contig97 | 242463 | C/T | |
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 | c.1229+2T>C | splice donor variant & intron variant | high | contig97 | 243389 | T/C |
|
|
aPT1 | c.864C>G | p.Asn288Lys | missense variant | moderate | contig121 | 2842407 | C/G | |
AAE1-2 | c.205T>A | p.Ser69Thr | missense variant | moderate | contig81 | 209167 | T/A |
|
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 | c.374A>G | p.His125Arg | missense variant | moderate | contig81 | 209336 | A/G |
|
AAE1-2 |
c.948_949ins |
p.Asp317fs | frameshift variant | high | contig81 | 209910 | C/CA |
|
AAE1-2 | c.952delC | p.Gln318fs | frameshift variant | high | contig81 | 209912 | AC/A |
|
AAE1-2 | c.953A>G | p.Gln318Arg | missense variant | moderate | contig81 | 209915 | A/G |
|
AAE1-2 | c.955C>T | p.Arg319Cys | missense variant | moderate | contig81 | 209917 | C/T |
|
AAE1-2 | c.1177G>A | p.Asp393Asn | missense variant | moderate | contig81 | 210139 | G/A |
|
AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
|
AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
|
AAE1-2 | c.1434G>T | p.Glu478Asp | missense variant | moderate | contig81 | 210396 | G/T |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.489A>T | p.Lys163Asn | missense variant | moderate | contig1439 | 1490874 | T/A |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
HDS-1 | c.1646A>G | p.Asp549Gly | missense variant | moderate | contig1891 | 885908 | T/C |
|
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1496A>G | p.Asn499Ser | missense variant | moderate | contig1891 | 886141 | T/C |
|
HDS-1 |
c.-108+1_-10 |
splice donor variant & intron variant | high | contig1891 | 889975 | A/AC |
|
|
aPT4 | c.202T>A | p.Leu68Ile | missense variant | moderate | contig121 | 2828858 | T/A |
|
aPT4 | c.517A>T | p.Ile173Leu | missense variant & splice region variant | moderate | contig121 | 2830795 | A/T |
|
FLD | c.2981T>C | p.Met994Thr | missense variant | moderate | contig1450 | 2044012 | A/G | |
FLD | c.2964C>A | p.Asp988Glu | missense variant | moderate | contig1450 | 2044029 | G/T | |
FLD | c.2953G>A | p.Ala985Thr | missense variant | moderate | contig1450 | 2044040 | C/T |
|
FLD | c.2686G>A | p.Ala896Thr | missense variant | moderate | contig1450 | 2044848 | C/T | |
FLD | c.2681T>C | p.Ile894Thr | missense variant | moderate | contig1450 | 2044853 | A/G | |
AAE1-3 | c.715G>A | p.Val239Ile | missense variant | moderate | contig976 | 1083139 | C/T |
|
AAE1-3 | c.667G>A | p.Val223Ile | missense variant | moderate | contig976 | 1083187 | C/T |
|
AAE1-3 | c.655C>T | p.Pro219Ser | missense variant | moderate | contig976 | 1083199 | G/A |
|
AAE1-3 | c.79A>G | p.Thr27Ala | missense variant | moderate | contig976 | 1083996 | T/C |
|
AAE1-3 | c.52G>A | p.Gly18Ser | missense variant | moderate | contig976 | 1084023 | C/T |
|
AAE1-3 | c.12G>A | p.Met4Ile | missense variant | moderate | contig976 | 1084063 | C/T |
|
AAE1-3 | c.11T>C | p.Met4Thr | missense variant | moderate | contig976 | 1084064 | A/G |
|
AAE1-3 | c.3G>A | p.Met1? | start lost | high | contig976 | 1084072 | C/T | |
GGR | c.637G>A | p.Ala213Thr | missense variant | moderate | contig2282 | 549629 | G/A |
|
GGR | c.810A>C | p.Glu270Asp | missense variant | moderate | contig2282 | 549802 | A/C |
|
PKSB-3 | c.1901C>G | p.Ala634Gly | missense variant | moderate | contig93 | 3340008 | C/G |
|
Nearest genetic relatives (All Samples)
- 0.153 Kompolti (SRR14708277)
- 0.157 AOAC MI 508 (RSP11750)
- 0.159 AOAC MI 535 (RSP11754)
- 0.163 AOAC MI 504 (RSP11749)
- 0.163 AOAC MI 545 (RSP11756)
- 0.165 AOAC MI 599 (RSP11762)
- 0.171 AOAC MI 542 (RSP11755)
- 0.172 AOAC MI 548 (RSP11757)
- 0.172 AOAC MI 588 (RSP11760)
- 0.173 AOAC MI 532 (RSP11752)
- 0.173 AOAC MI 597 (RSP11761)
- 0.173 AOAC MI 567 (RSP11758)
- 0.173 Rest (RSP11377)
- 0.175 AOAC MI 533 (RSP11753)
- 0.180 AOAC MI 569 (RSP11759)
- 0.180 Lift (RSP11378)
- 0.184 AOAC MI 501 (RSP11748)
- 0.190 VIR 483 (SRR14708238)
- 0.203 R1in136 (SRR14708237)
- 0.205 Liberty Haze (RSP11000)
Nearest genetic relatives (Base Tree)
- 0.211 UP Sunrise (RSP10989)
- 0.213 Liberty Haze (RSP11000)
- 0.261 Tisza (RSP10659)
- 0.282 Hermaphrodite ResearchSample2 (RSP11050)
- 0.284 Kyrgyz Gold (RSP11054)
- 0.286 KYRG-11 (RSP11051)
- 0.290 Cbot-2019-001 (RSP11129)
- 0.292 Futura 75 (RSP10664)
- 0.296 Lovrin (RSP10658)
- 0.297 Carmagnola (RSP11037)
- 0.297 Recon (RSP10755)
- 0.297 Tisza (RSP11044)
- 0.301 Golden Goat 2 (RSP10991)
- 0.303 Italian Kiss (RSP11034)
- 0.304 Cherry (RSP11143)
- 0.307 Blueberry Cheesecake (RSP10680)
- 0.308 Jiangji (RSP10653)
- 0.310 RKM-2018-019 (RSP11111)
- 0.310 Durban Poison (RSP11014)
- 0.314 RKM-2018-020 (RSP11112)
Most genetically distant strains (All Samples)
- 0.433 80E (RSP11213)
- 0.429 JL 2 (RSP11076)
- 0.413 JL 4th Gen 5 (RSP11199)
- 0.413 JL 3rd Gen Father (RSP11196)
- 0.412 JL yellow (RSP11075)
- 0.409 Tanao Sri 46 (RSP11486)
- 0.409 JL 3rd Gen Mother (RSP11214)
- 0.406 White Label 1 (RSP11336)
- 0.405 Feral (RSP11205)
- 0.404 Blueberry Cheesecake (RSP10672)
- 0.401 Kush Hemp E1 (RSP11128)
- 0.398 RKM-2018-034 (RSP11126)
- 0.396 Tanao Sri-white 80 (RSP11621)
- 0.394 Tiger Tail 30 (RSP11484)
- 0.394 JL 4th Gen 4 (RSP11198)
- 0.390 Tanao Sri-white-T1 (RSP11658)
- 0.389 Red Eye OG (RSP11190)
- 0.389 JL 4th Gen 1 (RSP11193)
- 0.388 Blueberry Cheesecake (RSP10670)
- 0.384 Feral (RSP10891)
Most genetically distant strains (Base Tree)
- 0.411 Blueberry Cheesecake (RSP10672)
- 0.408 JL yellow (RSP11075)
- 0.407 RKM-2018-034 (RSP11126)
- 0.394 Kush Hemp E1 (RSP11128)
- 0.393 RKM-2018-002 (RSP11093)
- 0.388 Skunk 18 (RSP11038)
- 0.382 USO 31 (RSP10981)
- 0.379 Skywalker OG (RSP10837)
- 0.379 RKM-2018-026 (RSP11118)
- 0.377 Sour Raspberry (RSP10551)
- 0.365 RKM-2018-027 (RSP11119)
- 0.363 RKM-2018-033 (RSP11125)
- 0.363 CST (RSP11002)
- 0.358 RKM-2018-005 (RSP11096)
- 0.353 Cherry (RSP11142)
- 0.349 Cbot-2019-004 (RSP11132)
- 0.348 Gold Cracker (RSP11048)
- 0.347 RKM-2018-022 (RSP11114)
- 0.346 RKM-2018-031 (RSP11123)
- 0.345 Carmagnola (RSP10979)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 15
- Concordance:
- 13
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 3
- Concordance:
- 3