GXI
SRR 14708198
General Information
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
GPPs1 | c.885G>A | p.Met295Ile | missense variant & splice region variant | moderate | contig676 | 169675 | G/A |
|
GPPs1 | c.896A>G | p.Asn299Ser | missense variant | moderate | contig676 | 169772 | A/G |
|
GPPs1 |
c.923_927+2d |
p.Val308fs | frameshift variant & splice donor variant & splice region variant & intron variant | high | contig676 | 169798 | GTTTTGGT/G |
|
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
PHL-2 | c.575T>C | p.Ile192Thr | missense variant | moderate | contig2621 | 339568 | T/C |
|
PHL-2 | c.841A>T | p.Ser281Cys | missense variant | moderate | contig2621 | 340119 | A/T |
|
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.1115T>G | p.Val372Gly | missense variant | moderate | contig2621 | 340393 | T/G |
|
PHL-2 | c.1166C>T | p.Pro389Leu | missense variant | moderate | contig2621 | 340444 | C/T | |
PHL-2 | c.1577A>G | p.His526Arg | missense variant | moderate | contig2621 | 340855 | A/G |
|
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.3490G>C | p.Val1164Leu | missense variant | moderate | contig2621 | 343533 | G/C |
|
PHL-2 | c.3494C>T | p.Ser1165Leu | missense variant | moderate | contig2621 | 343537 | C/T |
|
PKSG-4b |
c.509_510ins |
p.Lys171fs | frameshift variant & stop gained | high | contig700 | 2721163 |
T/TGGGCTATTT |
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b |
c.353_354ins |
p.Gly119fs | frameshift variant | high | contig700 | 2721319 | T/TGG |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
PKSG-4b | c.229G>A | p.Gly77Ser | missense variant | moderate | contig700 | 2724206 | C/T |
|
PKSG-4b | c.216G>C | p.Leu72Phe | missense variant | moderate | contig700 | 2724219 | C/G |
|
PKSG-4b | c.206T>C | p.Leu69Ser | missense variant | moderate | contig700 | 2724229 | A/G |
|
PKSG-4b | c.100C>T | p.Arg34Trp | missense variant | moderate | contig700 | 2724335 | G/A |
|
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
FAD2-2 | c.311C>T | p.Ala104Val | missense variant | moderate | contig83 | 1803058 | G/A |
|
FAD2-2 | c.303G>T | p.Trp101Cys | missense variant | moderate | contig83 | 1803066 | C/A |
|
FAD2-2 | c.248C>G | p.Pro83Arg | missense variant | moderate | contig83 | 1803121 | G/C |
|
FAD2-2 | c.208C>T | p.Pro70Ser | missense variant | moderate | contig83 | 1803161 | G/A |
|
FAD2-2 | c.190C>T | p.His64Tyr | missense variant | moderate | contig83 | 1803179 | G/A |
|
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
FAD2-2 | c.154G>T | p.Val52Phe | missense variant | moderate | contig83 | 1803215 | C/A |
|
FAD2-2 | c.5A>C | p.Gln2Pro | missense variant | moderate | contig83 | 1803364 | T/G |
|
ELF4 | c.395C>T | p.Pro132Leu | missense variant | moderate | contig869 | 622175 | G/A |
|
ELF3 | c.574A>G | p.Asn192Asp | missense variant | moderate | contig97 | 242280 | A/G | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF5 | c.1505C>T | p.Ala502Val | missense variant | moderate | contig382 | 881943 | C/T |
|
aPT1 | c.160A>C | p.Thr54Pro | missense variant | moderate | contig121 | 2835867 | A/C | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
aPT1 | c.670T>A | p.Ser224Thr | missense variant | moderate | contig121 | 2840278 | T/A |
|
aPT1 | c.727G>T | p.Glu243* | stop gained | high | contig121 | 2841362 | G/T | |
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 | c.374A>G | p.His125Arg | missense variant | moderate | contig81 | 209336 | A/G |
|
AAE1-2 |
c.948_949ins |
p.Asp317fs | frameshift variant | high | contig81 | 209910 | C/CA |
|
AAE1-2 | c.952delC | p.Gln318fs | frameshift variant | high | contig81 | 209912 | AC/A |
|
AAE1-2 | c.953A>G | p.Gln318Arg | missense variant | moderate | contig81 | 209915 | A/G |
|
AAE1-2 | c.955C>T | p.Arg319Cys | missense variant | moderate | contig81 | 209917 | C/T |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
AAE1-2 | c.1102C>A | p.His368Asn | missense variant | moderate | contig81 | 210064 | C/A |
|
AAE1-2 | c.1115A>G | p.Glu372Gly | missense variant | moderate | contig81 | 210077 | A/G |
|
AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
|
AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
|
AAE1-2 | c.1434G>T | p.Glu478Asp | missense variant | moderate | contig81 | 210396 | G/T |
|
PHL-1 |
c.3022_3027d |
p.Gln1008_Gl |
conservative inframe insertion | moderate | contig1439 | 1486769 | T/TCTGCTG |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
FAD4 | c.179A>G | p.Lys60Arg | missense variant | moderate | contig784 | 1690931 | A/G |
|
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.109G>A | p.Val37Ile | missense variant | moderate | contig1891 | 889283 | C/T |
|
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 |
c.-108+1_-10 |
splice donor variant & intron variant | high | contig1891 | 889975 | A/AC |
|
|
PIE1-2 | c.6653A>G | p.Asn2218Ser | missense variant | moderate | contig1460 | 1184434 | T/C | |
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
PIE1-2 | c.1630G>C | p.Ala544Pro | missense variant | moderate | contig1460 | 1191600 | C/G | |
PIE1-2 | c.1289A>G | p.Asp430Gly | missense variant | moderate | contig1460 | 1192109 | T/C |
|
PIE1-2 | c.1243G>C | p.Asp415His | missense variant | moderate | contig1460 | 1192155 | C/G |
|
PIE1-2 | c.710C>T | p.Pro237Leu | missense variant | moderate | contig1460 | 1193804 | G/A | |
PIE1-2 | c.706T>C | p.Tyr236His | missense variant | moderate | contig1460 | 1193808 | A/G | |
PIE1-2 | c.665+2T>A | splice donor variant & intron variant | high | contig1460 | 1194391 | A/T |
|
|
PIE1-2 | c.637T>A | p.Ser213Thr | missense variant | moderate | contig1460 | 1194421 | A/T | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
FT | c.13C>G | p.Leu5Val | missense variant | moderate | contig1561 | 3124437 | C/G | |
FT |
c.38_43delAT |
p.Asn13_Asn1 |
disruptive inframe deletion | moderate | contig1561 | 3124441 | TTAATAA/T |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 | c.517A>T | p.Ile173Leu | missense variant & splice region variant | moderate | contig121 | 2830795 | A/T |
|
aPT4 | c.634C>A | p.Pro212Thr | missense variant | moderate | contig121 | 2830912 | C/A |
|
aPT4 | c.757G>T | p.Val253Leu | missense variant | moderate | contig121 | 2831364 | G/T |
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
AAE1-3 | c.722G>A | p.Arg241Lys | missense variant | moderate | contig976 | 1083132 | C/T |
|
AAE1-3 | c.659G>A | p.Arg220Gln | missense variant | moderate | contig976 | 1083195 | C/T |
|
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
AAE1-3 | c.484G>A | p.Val162Ile | missense variant | moderate | contig976 | 1083541 | C/T |
|
AAE1-3 | c.199A>G | p.Asn67Asp | missense variant | moderate | contig976 | 1083876 | T/C |
|
AAE1-3 | c.188A>G | p.Asn63Ser | missense variant | moderate | contig976 | 1083887 | T/C |
|
PIE1-1 | c.1222C>G | p.Gln408Glu | missense variant | moderate | contig1225 | 2281482 | C/G | |
GGR | c.376G>C | p.Glu126Gln | missense variant | moderate | contig2282 | 549368 | G/C | |
GGR | c.382C>T | p.Leu128Phe | missense variant | moderate | contig2282 | 549374 | C/T |
|
GGR | c.456T>A | p.His152Gln | missense variant | moderate | contig2282 | 549448 | T/A |
|
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
PKSB-3 | c.64A>C | p.Ser22Arg | missense variant | moderate | contig93 | 3333355 | A/C |
|
PKSB-3 | c.181G>A | p.Val61Ile | missense variant | moderate | contig93 | 3333938 | G/A |
|
PKSB-3 | c.274T>G | p.Ser92Ala | missense variant | moderate | contig93 | 3335429 | T/G |
|
PKSB-3 | c.1652A>G | p.Glu551Gly | missense variant | moderate | contig93 | 3339759 | A/G |
|
PKSB-3 | c.1874C>A | p.Ser625Tyr | missense variant | moderate | contig93 | 3339981 | C/A |
|
FAD2 | c.94A>G | p.Thr32Ala | missense variant | moderate | contig1460 | 1084166 | T/C |
|
Nearest genetic relatives (All Samples)
- 0.182 Tak-HN (RSP11618)
- 0.213 KYRG-151 (RSP11052)
- 0.219 Serious Happiness (RSP10763)
- 0.225 AOAC MI 504 (RSP11749)
- 0.225 Durban Poison 1 (RSP11013)
- 0.225 AOAC MI 508 (RSP11750)
- 0.227 AOAC MI 597 (RSP11761)
- 0.229 Durban Poison 1 (RSP10996)
- 0.229 AOAC MI 567 (RSP11758)
- 0.231 AOAC MI 542 (RSP11755)
- 0.233 AOAC MI 533 (RSP11753)
- 0.234 Lift (RSP11378)
- 0.234 AOAC MI 532 (RSP11752)
- 0.234 Liberty Haze (RSP11000)
- 0.235 AOAC MI 569 (RSP11759)
- 0.235 Jiangji (RSP10653)
- 0.237 AOAC MI 599 (RSP11762)
- 0.239 AOAC MI 545 (RSP11756)
- 0.239 AOAC MI 501 (RSP11748)
- 0.239 Liberty Haze (RSP10946)
Nearest genetic relatives (Base Tree)
- 0.236 KYRG-11 (RSP11051)
- 0.240 Jiangji (RSP10653)
- 0.254 Liberty Haze (RSP11000)
- 0.258 Blueberry Cheesecake (RSP10684)
- 0.268 RKM-2018-031 (RSP11123)
- 0.272 RKM-2018-009 (RSP11100)
- 0.273 Tygra (RSP10667)
- 0.281 RKM-2018-029 (RSP11121)
- 0.291 Golden Goat 2 (RSP10991)
- 0.293 RKM-2018-005 (RSP11096)
- 0.297 RKM-2018-019 (RSP11111)
- 0.297 RKM-2018-027 (RSP11119)
- 0.299 Kimbo Slice (RSP10997)
- 0.299 RKM-2018-028 (RSP11120)
- 0.300 Gold Cracker (RSP11048)
- 0.302 Futura 75 (RSP10664)
- 0.303 Durban Poison (RSP11014)
- 0.304 Blue Dream (RSP11033)
- 0.304 Hermaphrodite ResearchSample2 (RSP11050)
- 0.307 Feral (RSP10890)
Most genetically distant strains (All Samples)
- 0.438 Cherry Blossom (RSP11323)
- 0.436 JL 4th Gen 1 (RSP11193)
- 0.425 Cherry Blossom (RSP11318)
- 0.412 CS (RSP11208)
- 0.411 JL 4th Gen 5 (RSP11199)
- 0.403 Unknown- Cherry Wine - 001 (RSP11268)
- 0.402 Feral (RSP11205)
- 0.402 Carmaleonte (RSP11207)
- 0.401 YMCM (RSP11416)
- 0.399 JL 3rd Gen Father (RSP11196)
- 0.398 JL 4th Gen 6 (RSP11200)
- 0.396 JL yellow (RSP11075)
- 0.396 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.393 Cherry Blossom (RSP11301)
- 0.393 JL 4th Gen 4 (RSP11198)
- 0.391 Red Eye OG (RSP11190)
- 0.391 JL 3rd Gen Mother (RSP11214)
- 0.391 Cherry Blossom (RSP11328)
- 0.387 Diana (RSP10235)
- 0.387 Cherry Blossom (RSP11309)
Most genetically distant strains (Base Tree)
- 0.417 JL yellow (RSP11075)
- 0.391 Carmagnola (RSP10979)
- 0.378 RKM-2018-034 (RSP11126)
- 0.371 Fedora 17 (RSP10661)
- 0.369 Ivory (RSP10668)
- 0.367 Cbot-2019-005 (RSP11133)
- 0.364 Cbot-2019-004 (RSP11132)
- 0.363 Skywalker OG (RSP10837)
- 0.359 RKM-2018-002 (RSP11093)
- 0.355 Kush Hemp E1 (RSP11128)
- 0.354 The Gift (RSP10988)
- 0.350 USO 31 (RSP10981)
- 0.349 RKM-2018-026 (RSP11118)
- 0.347 Monoica (RSP10241)
- 0.344 RKM-2018-032 (RSP11124)
- 0.342 Black Beauty (RSP11035)
- 0.341 Tisza (RSP10659)
- 0.340 Skunk 18 (RSP11038)
- 0.340 Cbot-2019-006 (RSP11134)
- 0.339 Cbot-2019-001 (RSP11129)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 12
- Concordance:
- 10
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 4
- Concordance:
- 4