GXI
SRR 14708198
General Information
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
GPPs1 | c.885G>A | p.Met295Ile | missense variant & splice region variant | moderate | contig676 | 169675 | G/A |
|
GPPs1 | c.896A>G | p.Asn299Ser | missense variant | moderate | contig676 | 169772 | A/G |
|
GPPs1 |
c.923_927+2d |
p.Val308fs | frameshift variant & splice donor variant & splice region variant & intron variant | high | contig676 | 169798 | GTTTTGGT/G |
|
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
PHL-2 | c.575T>C | p.Ile192Thr | missense variant | moderate | contig2621 | 339568 | T/C |
|
PHL-2 | c.841A>T | p.Ser281Cys | missense variant | moderate | contig2621 | 340119 | A/T |
|
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.1115T>G | p.Val372Gly | missense variant | moderate | contig2621 | 340393 | T/G |
|
PHL-2 | c.1166C>T | p.Pro389Leu | missense variant | moderate | contig2621 | 340444 | C/T | |
PHL-2 | c.1577A>G | p.His526Arg | missense variant | moderate | contig2621 | 340855 | A/G |
|
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.3490G>C | p.Val1164Leu | missense variant | moderate | contig2621 | 343533 | G/C |
|
PHL-2 | c.3494C>T | p.Ser1165Leu | missense variant | moderate | contig2621 | 343537 | C/T |
|
PKSG-4b |
c.509_510ins |
p.Lys171fs | frameshift variant & stop gained | high | contig700 | 2721163 |
T/TGGGCTATTT |
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b |
c.353_354ins |
p.Gly119fs | frameshift variant | high | contig700 | 2721319 | T/TGG |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
PKSG-4b | c.229G>A | p.Gly77Ser | missense variant | moderate | contig700 | 2724206 | C/T |
|
PKSG-4b | c.216G>C | p.Leu72Phe | missense variant | moderate | contig700 | 2724219 | C/G |
|
PKSG-4b | c.206T>C | p.Leu69Ser | missense variant | moderate | contig700 | 2724229 | A/G |
|
PKSG-4b | c.100C>T | p.Arg34Trp | missense variant | moderate | contig700 | 2724335 | G/A |
|
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
FAD2-2 | c.311C>T | p.Ala104Val | missense variant | moderate | contig83 | 1803058 | G/A |
|
FAD2-2 | c.303G>T | p.Trp101Cys | missense variant | moderate | contig83 | 1803066 | C/A |
|
FAD2-2 | c.248C>G | p.Pro83Arg | missense variant | moderate | contig83 | 1803121 | G/C |
|
FAD2-2 | c.208C>T | p.Pro70Ser | missense variant | moderate | contig83 | 1803161 | G/A |
|
FAD2-2 | c.190C>T | p.His64Tyr | missense variant | moderate | contig83 | 1803179 | G/A |
|
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
FAD2-2 | c.154G>T | p.Val52Phe | missense variant | moderate | contig83 | 1803215 | C/A |
|
FAD2-2 | c.5A>C | p.Gln2Pro | missense variant | moderate | contig83 | 1803364 | T/G |
|
ELF4 | c.395C>T | p.Pro132Leu | missense variant | moderate | contig869 | 622175 | G/A |
|
ELF3 | c.574A>G | p.Asn192Asp | missense variant | moderate | contig97 | 242280 | A/G | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF5 | c.1505C>T | p.Ala502Val | missense variant | moderate | contig382 | 881943 | C/T |
|
aPT1 | c.160A>C | p.Thr54Pro | missense variant | moderate | contig121 | 2835867 | A/C | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
aPT1 | c.670T>A | p.Ser224Thr | missense variant | moderate | contig121 | 2840278 | T/A |
|
aPT1 | c.727G>T | p.Glu243* | stop gained | high | contig121 | 2841362 | G/T | |
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 | c.374A>G | p.His125Arg | missense variant | moderate | contig81 | 209336 | A/G |
|
AAE1-2 |
c.948_949ins |
p.Asp317fs | frameshift variant | high | contig81 | 209910 | C/CA |
|
AAE1-2 | c.952delC | p.Gln318fs | frameshift variant | high | contig81 | 209912 | AC/A |
|
AAE1-2 | c.953A>G | p.Gln318Arg | missense variant | moderate | contig81 | 209915 | A/G |
|
AAE1-2 | c.955C>T | p.Arg319Cys | missense variant | moderate | contig81 | 209917 | C/T |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
AAE1-2 | c.1102C>A | p.His368Asn | missense variant | moderate | contig81 | 210064 | C/A |
|
AAE1-2 | c.1115A>G | p.Glu372Gly | missense variant | moderate | contig81 | 210077 | A/G |
|
AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
|
AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
|
AAE1-2 | c.1434G>T | p.Glu478Asp | missense variant | moderate | contig81 | 210396 | G/T |
|
PHL-1 |
c.3022_3027d |
p.Gln1008_Gl |
conservative inframe insertion | moderate | contig1439 | 1486769 | T/TCTGCTG |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
FAD4 | c.179A>G | p.Lys60Arg | missense variant | moderate | contig784 | 1690931 | A/G |
|
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.109G>A | p.Val37Ile | missense variant | moderate | contig1891 | 889283 | C/T |
|
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 |
c.-108+1_-10 |
splice donor variant & intron variant | high | contig1891 | 889975 | A/AC |
|
|
PIE1-2 | c.6653A>G | p.Asn2218Ser | missense variant | moderate | contig1460 | 1184434 | T/C | |
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
PIE1-2 | c.1630G>C | p.Ala544Pro | missense variant | moderate | contig1460 | 1191600 | C/G | |
PIE1-2 | c.1289A>G | p.Asp430Gly | missense variant | moderate | contig1460 | 1192109 | T/C |
|
PIE1-2 | c.1243G>C | p.Asp415His | missense variant | moderate | contig1460 | 1192155 | C/G |
|
PIE1-2 | c.710C>T | p.Pro237Leu | missense variant | moderate | contig1460 | 1193804 | G/A | |
PIE1-2 | c.706T>C | p.Tyr236His | missense variant | moderate | contig1460 | 1193808 | A/G | |
PIE1-2 | c.665+2T>A | splice donor variant & intron variant | high | contig1460 | 1194391 | A/T |
|
|
PIE1-2 | c.637T>A | p.Ser213Thr | missense variant | moderate | contig1460 | 1194421 | A/T | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
FT | c.13C>G | p.Leu5Val | missense variant | moderate | contig1561 | 3124437 | C/G | |
FT |
c.38_43delAT |
p.Asn13_Asn1 |
disruptive inframe deletion | moderate | contig1561 | 3124441 | TTAATAA/T |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 | c.517A>T | p.Ile173Leu | missense variant & splice region variant | moderate | contig121 | 2830795 | A/T |
|
aPT4 | c.634C>A | p.Pro212Thr | missense variant | moderate | contig121 | 2830912 | C/A |
|
aPT4 | c.757G>T | p.Val253Leu | missense variant | moderate | contig121 | 2831364 | G/T |
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
AAE1-3 | c.722G>A | p.Arg241Lys | missense variant | moderate | contig976 | 1083132 | C/T |
|
AAE1-3 | c.659G>A | p.Arg220Gln | missense variant | moderate | contig976 | 1083195 | C/T |
|
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
AAE1-3 | c.484G>A | p.Val162Ile | missense variant | moderate | contig976 | 1083541 | C/T |
|
AAE1-3 | c.199A>G | p.Asn67Asp | missense variant | moderate | contig976 | 1083876 | T/C |
|
AAE1-3 | c.188A>G | p.Asn63Ser | missense variant | moderate | contig976 | 1083887 | T/C |
|
PIE1-1 | c.1222C>G | p.Gln408Glu | missense variant | moderate | contig1225 | 2281482 | C/G | |
GGR | c.376G>C | p.Glu126Gln | missense variant | moderate | contig2282 | 549368 | G/C | |
GGR | c.382C>T | p.Leu128Phe | missense variant | moderate | contig2282 | 549374 | C/T |
|
GGR | c.456T>A | p.His152Gln | missense variant | moderate | contig2282 | 549448 | T/A |
|
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
PKSB-3 | c.64A>C | p.Ser22Arg | missense variant | moderate | contig93 | 3333355 | A/C |
|
PKSB-3 | c.181G>A | p.Val61Ile | missense variant | moderate | contig93 | 3333938 | G/A |
|
PKSB-3 | c.274T>G | p.Ser92Ala | missense variant | moderate | contig93 | 3335429 | T/G |
|
PKSB-3 | c.1652A>G | p.Glu551Gly | missense variant | moderate | contig93 | 3339759 | A/G |
|
PKSB-3 | c.1874C>A | p.Ser625Tyr | missense variant | moderate | contig93 | 3339981 | C/A |
|
FAD2 | c.94A>G | p.Thr32Ala | missense variant | moderate | contig1460 | 1084166 | T/C |
|
Nearest genetic relatives (All Samples)
- 0.200 Tak-HN (RSP11618)
- 0.227 R3 (RSP11616)
- 0.230 R4 (RSP11617)
- 0.237 YNN (SRR14708199)
- 0.238 R2 (RSP11615)
- 0.241 KYRG-151 (RSP11052)
- 0.246 Jiangji (RSP10653)
- 0.247 IMA (SRR14708203)
- 0.247 IUL1 (SRR14708254)
- 0.252 R1 (RSP11483)
- 0.255 KYRG-11 (RSP11051)
- 0.257 Tisza (RSP11045)
- 0.257 Squirrel Tail -31- (RSP11485)
- 0.258 SCN (SRR14708201)
- 0.258 Tisza (RSP11044)
- 0.258 IUL2 (SRR14708253)
- 0.260 QHI (SRR14708202)
- 0.265 R3in134 (SRR14708219)
- 0.265 IBR3 (SRR14708249)
- 0.265 R2in135 (SRR14708221)
Nearest genetic relatives (Base Tree)
- 0.230 Jiangji (RSP10653)
- 0.248 KYRG-11 (RSP11051)
- 0.256 Tygra (RSP10667)
- 0.262 Tisza (RSP11044)
- 0.263 Kyrgyz Gold (RSP11054)
- 0.270 Santhica27 (RSP11047)
- 0.271 Futura 75 (RSP10664)
- 0.272 Fedora 17 (RSP10661)
- 0.273 Tisza (RSP10659)
- 0.277 Monoica (RSP10241)
- 0.278 Ivory (RSP10668)
- 0.278 USO 31 (RSP10981)
- 0.289 Lovrin (RSP10658)
- 0.290 Feral (RSP10890)
- 0.292 Carmagnola (RSP11037)
- 0.293 Carmagnola (RSP10979)
- 0.297 The Gift (RSP10988)
- 0.297 Liberty Haze (RSP11000)
- 0.297 Recon (RSP10755)
- 0.304 Hermaphrodite ResearchSample2 (RSP11050)
Most genetically distant strains (All Samples)
- 0.458 Cherry Blossom (RSP11318)
- 0.442 Cherry Blossom (RSP11323)
- 0.424 Cherry Blossom (RSP11301)
- 0.418 JL x NSPM1 4 (RSP11482)
- 0.414 Cherry Blossom (RSP11300)
- 0.411 Cherry Blossom (RSP11331)
- 0.409 Cherry Blossom (RSP11328)
- 0.408 Unknown--Cherry Wine---001- (RSP11268)
- 0.408 Northern Skunk (RSP11456)
- 0.404 Cherry Blossom (RSP11312)
- 0.403 Wife (RSP11148)
- 0.402 Cherry Blossom (RSP11325)
- 0.400 Cherry Blossom (RSP11306)
- 0.398 Cherry Blossom (RSP11302)
- 0.398 Cherry Blossom (RSP11322)
- 0.397 Cherry Blossom (RSP11274)
- 0.397 Chematonic -Cannatonic x Chemdawg- (RSP11394)
- 0.397 Escape Velocity (RSP11165)
- 0.396 Queen Dream (RSP11278)
- 0.396 Cherry Blossom (RSP11321)
Most genetically distant strains (Base Tree)
- 0.390 JL yellow (RSP11075)
- 0.384 RKM-2018-006 (RSP11097)
- 0.379 Cbot-2019-005 (RSP11133)
- 0.378 RKM-2018-028 (RSP11120)
- 0.373 Skunk#18 (RSP11038)
- 0.372 RKM-2018-022 (RSP11114)
- 0.368 RKM-2018-023 (RSP11115)
- 0.364 RKM-2018-018 (RSP11110)
- 0.364 Kush Hemp E1 (RSP11128)
- 0.363 RKM-2018-027 (RSP11119)
- 0.363 Italian Kiss (RSP11034)
- 0.358 RKM-2018-002 (RSP11093)
- 0.356 RKM-2018-032 (RSP11124)
- 0.353 Cbot-2019-001 (RSP11129)
- 0.351 RKM-2018-003 (RSP11094)
- 0.349 Hermaphrodite Research Sample1 (RSP11049)
- 0.347 Gold Cracker (RSP11048)
- 0.345 Black Beauty (RSP11035)
- 0.343 Cherry (RSP11142)
- 0.343 Sour Raspberry (RSP10551)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 12
- Concordance:
- 10
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 4
- Concordance:
- 4