SCN
SRR 14708201
General Information
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
PHL-2 | c.411C>A | p.Phe137Leu | missense variant | moderate | contig2621 | 339062 | C/A |
|
PHL-2 | c.455A>C | p.Asp152Ala | missense variant | moderate | contig2621 | 339191 | A/C | |
PHL-2 | c.2564T>A | p.Phe855Tyr | missense variant | moderate | contig2621 | 342607 | T/A | |
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PHL-2 | c.2756A>C | p.Glu919Ala | missense variant | moderate | contig2621 | 342799 | A/C | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.2830A>G | p.Asn944Asp | missense variant | moderate | contig2621 | 342873 | A/G |
|
PHL-2 |
c.2903_2905d |
p.Ser968dup | disruptive inframe insertion | moderate | contig2621 | 342939 | T/TGCA | |
PHL-2 | c.3062A>T | p.His1021Leu | missense variant | moderate | contig2621 | 343105 | A/T |
|
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PHL-2 | c.3467A>G | p.Gln1156Arg | missense variant | moderate | contig2621 | 343510 | A/G | |
PHL-2 | c.3552delG | p.Lys1185fs | frameshift variant | high | contig2621 | 343593 | CG/C |
|
PKSG-4b | c.544G>T | p.Gly182Trp | missense variant | moderate | contig700 | 2721129 | C/A |
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
PKSG-4b | c.229G>A | p.Gly77Ser | missense variant | moderate | contig700 | 2724206 | C/T |
|
PKSG-4b | c.216G>C | p.Leu72Phe | missense variant | moderate | contig700 | 2724219 | C/G |
|
PKSG-4b | c.206T>C | p.Leu69Ser | missense variant | moderate | contig700 | 2724229 | A/G |
|
PKSG-4a |
c.587_588ins |
p.Met196fs | frameshift variant & stop gained | high | contig700 | 1937993 |
C/CATGATTGTT |
|
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
PKSG-2a | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1944442 | A/C |
|
PKSG-2a | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1944445 | A/C |
|
PKSG-2a | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1944446 | C/T |
|
PKSG-2a | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1944456 | G/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
FAD2-2 | c.190C>T | p.His64Tyr | missense variant | moderate | contig83 | 1803179 | G/A |
|
FAD2-2 | c.62C>T | p.Pro21Leu | missense variant | moderate | contig83 | 1803307 | G/A |
|
FAD2-2 | c.23G>A | p.Ser8Asn | missense variant | moderate | contig83 | 1803346 | C/T |
|
FAD2-2 | c.5A>C | p.Gln2Pro | missense variant | moderate | contig83 | 1803364 | T/G |
|
ELF4 | c.144T>A | p.Asp48Glu | missense variant | moderate | contig869 | 622426 | A/T |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 | c.1771G>A | p.Ala591Thr | missense variant | moderate | contig97 | 244602 | G/A |
|
ELF3 |
c.1803_1805d |
p.His601del | disruptive inframe deletion | moderate | contig97 | 244625 | ACAT/A |
|
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.2140C>T | p.Pro714Ser | missense variant | moderate | contig97 | 244971 | C/T | |
ELF3 | c.2141C>G | p.Pro714Arg | missense variant | moderate | contig97 | 244972 | C/G | |
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
ELF5 | c.853C>T | p.Pro285Ser | missense variant | moderate | contig382 | 880715 | C/T | |
aPT1 |
c.2_6dupTGGG |
p.Leu3fs | frameshift variant | high | contig121 | 2835707 | C/CATGGG |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
AAE1-2 | c.1090A>G | p.Lys364Glu | missense variant | moderate | contig81 | 210052 | A/G |
|
AAE1-2 | c.1102C>A | p.His368Asn | missense variant | moderate | contig81 | 210064 | C/A |
|
AAE1-2 | c.1118C>G | p.Thr373Ser | missense variant | moderate | contig81 | 210080 | C/G |
|
AAE1-2 |
c.1327_1328i |
p.Glu442_Thr |
disruptive inframe insertion | moderate | contig81 | 210288 | A/AAGT |
|
AAE1-2 | c.1406A>G | p.Asn469Ser | missense variant | moderate | contig81 | 210368 | A/G |
|
AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
|
AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
|
AAE1-2 | c.1434G>T | p.Glu478Asp | missense variant | moderate | contig81 | 210396 | G/T |
|
AAE1-2 | c.1541T>C | p.Val514Ala | missense variant | moderate | contig81 | 210503 | T/C |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
PHL-1 | c.1306G>A | p.Gly436Ser | missense variant | moderate | contig1439 | 1489892 | C/T |
|
PHL-1 | c.407G>A | p.Arg136Gln | missense variant | moderate | contig1439 | 1491441 | C/T | |
PHL-1 | c.176G>A | p.Gly59Glu | missense variant | moderate | contig1439 | 1492817 | C/T |
|
PHL-1 | c.175G>A | p.Gly59Arg | missense variant | moderate | contig1439 | 1492818 | C/T | |
Edestin |
c.130_131ins |
p.Gly43_Ser4 |
conservative inframe insertion | moderate | contig850 | 3065159 | G/GAAT |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1579T>C | p.Tyr527His | missense variant | moderate | contig1891 | 885975 | A/G |
|
HDS-1 | c.1558T>C | p.Ser520Pro | missense variant | moderate | contig1891 | 885996 | A/G |
|
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 | c.51C>G | p.Asp17Glu | missense variant | moderate | contig1891 | 889341 | G/C |
|
HDS-1 | c.35G>A | p.Cys12Tyr | missense variant | moderate | contig1891 | 889357 | C/T | |
HDS-1 |
c.-108+1_-10 |
splice donor variant & intron variant | high | contig1891 | 889975 | A/AC |
|
|
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.1630G>C | p.Ala544Pro | missense variant | moderate | contig1460 | 1191600 | C/G | |
PIE1-2 | c.1289A>G | p.Asp430Gly | missense variant | moderate | contig1460 | 1192109 | T/C |
|
EMF2 | c.722C>T | p.Thr241Ile | missense variant | moderate | contig954 | 3050302 | C/T | |
EMF2 | c.1205C>T | p.Ala402Val | missense variant & splice region variant | moderate | contig954 | 3055694 | C/T | |
EMF2 | c.1228A>G | p.Ser410Gly | missense variant | moderate | contig954 | 3055717 | A/G |
|
EMF2 | c.1315G>C | p.Ala439Pro | missense variant | moderate | contig954 | 3055804 | G/C | |
EMF2 | c.1742C>G | p.Thr581Ser | missense variant | moderate | contig954 | 3059899 | C/G |
|
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
EMF1-1 | c.193A>G | p.Ile65Val | missense variant | moderate | contig883 | 269682 | A/G |
|
FT | c.240C>G | p.Asn80Lys | missense variant | moderate | contig1561 | 3124664 | C/G |
|
FT |
c.395_396ins |
p.Gln132deli |
stop gained & disruptive inframe insertion | high | contig1561 | 3126431 | C/CATT |
|
aPT4 | c.153A>T | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/T |
|
AAE1-3 | c.729G>T | p.Lys243Asn | missense variant | moderate | contig976 | 1083125 | C/A |
|
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
AAE1-3 | c.487A>T | p.Met163Leu | missense variant | moderate | contig976 | 1083538 | T/A |
|
AAE1-3 | c.467T>C | p.Met156Thr | missense variant | moderate | contig976 | 1083558 | A/G |
|
AAE1-3 | c.416T>C | p.Leu139Pro | missense variant | moderate | contig976 | 1083609 | A/G |
|
AAE1-3 | c.388G>A | p.Gly130Ser | missense variant | moderate | contig976 | 1083637 | C/T |
|
AAE1-3 | c.382T>C | p.Tyr128His | missense variant | moderate | contig976 | 1083643 | A/G |
|
AAE1-3 | c.327G>T | p.Trp109Cys | missense variant | moderate | contig976 | 1083698 | C/A |
|
AAE1-3 | c.301A>T | p.Thr101Ser | missense variant | moderate | contig976 | 1083724 | T/A |
|
AAE1-3 | c.293A>G | p.Asp98Gly | missense variant | moderate | contig976 | 1083732 | T/C |
|
AAE1-3 | c.235A>C | p.Lys79Gln | missense variant & splice region variant | moderate | contig976 | 1083840 | T/G |
|
AAE1-3 | c.167A>G | p.Glu56Gly | missense variant | moderate | contig976 | 1083908 | T/C |
|
AAE1-3 | c.147G>T | p.Gln49His | missense variant | moderate | contig976 | 1083928 | C/A |
|
AAE1-3 | c.127A>G | p.Ile43Val | missense variant | moderate | contig976 | 1083948 | T/C |
|
AAE1-3 | c.125A>G | p.Glu42Gly | missense variant | moderate | contig976 | 1083950 | T/C |
|
AAE1-3 | c.80C>T | p.Thr27Ile | missense variant | moderate | contig976 | 1083995 | G/A |
|
AAE1-3 | c.79A>G | p.Thr27Ala | missense variant | moderate | contig976 | 1083996 | T/C |
|
AAE1-3 | c.52G>A | p.Gly18Ser | missense variant | moderate | contig976 | 1084023 | C/T |
|
AAE1-3 | c.48C>A | p.Cys16* | stop gained | high | contig976 | 1084027 | G/T |
|
AAE1-3 | c.14C>T | p.Ala5Val | missense variant | moderate | contig976 | 1084061 | G/A |
|
PIE1-1 | c.1222C>G | p.Gln408Glu | missense variant | moderate | contig1225 | 2281482 | C/G | |
GGR | c.456T>A | p.His152Gln | missense variant | moderate | contig2282 | 549448 | T/A |
|
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
PKSB-3 | c.1652A>G | p.Glu551Gly | missense variant | moderate | contig93 | 3339759 | A/G |
|
PKSB-3 | c.1946C>T | p.Pro649Leu | missense variant | moderate | contig93 | 3340053 | C/T |
|
Nearest genetic relatives (All Samples)
- 0.191 AOAC MI 567 (RSP11758)
- 0.196 AOAC MI 501 (RSP11748)
- 0.200 AOAC MI 597 (RSP11761)
- 0.202 AOAC MI 599 (RSP11762)
- 0.203 AOAC MI 542 (RSP11755)
- 0.206 AOAC MI 545 (RSP11756)
- 0.206 AOAC MI 533 (RSP11753)
- 0.207 AOAC MI 588 (RSP11760)
- 0.208 AOAC MI 548 (RSP11757)
- 0.209 AOAC MI 532 (RSP11752)
- 0.211 AOAC MI 508 (RSP11750)
- 0.214 North Traveler (RSP11163)
- 0.214 AOAC MI 569 (RSP11759)
- 0.215 Lift (RSP11378)
- 0.216 AOAC MI 504 (RSP11749)
- 0.216 AOAC MI 535 (RSP11754)
- 0.217 Rest (RSP11377)
- 0.220 Tak-HN (RSP11618)
- 0.220 Super Lemon Haze (RSP11641)
- 0.221 VIR 483 (SRR14708239)
Nearest genetic relatives (Base Tree)
- 0.239 KYRG-11 (RSP11051)
- 0.261 Liberty Haze (RSP11000)
- 0.265 QUEEN JESUS (RSP10105)
- 0.269 CST (RSP11002)
- 0.274 Jiangji (RSP10653)
- 0.276 Hermaphrodite ResearchSample2 (RSP11050)
- 0.277 Golden Goat 2 (RSP10991)
- 0.278 Kimbo Slice (RSP10997)
- 0.281 Cherry (RSP11142)
- 0.283 RKM-2018-027 (RSP11119)
- 0.283 USO 31 (RSP10981)
- 0.288 Blueberry Cheesecake (RSP10684)
- 0.290 RKM-2018-031 (RSP11123)
- 0.293 Recon (RSP10755)
- 0.294 Durban Poison (RSP11014)
- 0.298 RKM-2018-020 (RSP11112)
- 0.299 RKM-2018-019 (RSP11111)
- 0.299 Carmagnola (RSP11037)
- 0.303 RKM-2018-033 (RSP11125)
- 0.306 Ivory (RSP10668)
Most genetically distant strains (All Samples)
- 0.465 JL 4th Gen 1 (RSP11193)
- 0.454 JL 4th Gen 5 (RSP11199)
- 0.436 JL yellow (RSP11075)
- 0.428 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.422 JL 4th Gen 6 (RSP11200)
- 0.420 Cherry Blossom (RSP11323)
- 0.419 JL 3rd Gen Father (RSP11196)
- 0.416 Santhica 27 (RSP10665)
- 0.405 JL 3rd Gen Mother (RSP11214)
- 0.404 JL 4th Gen 3 (RSP11195)
- 0.401 Santhica27 (RSP11046)
- 0.400 Carmagnola (RSP11202)
- 0.400 Tygra (RSP10667)
- 0.398 Cbot-2019-001 (RSP11129)
- 0.396 JL 2 (RSP11076)
- 0.395 JL 4th Gen 4 (RSP11198)
- 0.393 Feral (RSP11206)
- 0.392 Cbot-2019-003 (RSP11131)
- 0.391 Cbot-2019-004 (RSP11132)
- 0.390 Cherry Blossom (RSP11318)
Most genetically distant strains (Base Tree)
- 0.434 JL yellow (RSP11075)
- 0.392 Cbot-2019-004 (RSP11132)
- 0.385 Cbot-2019-001 (RSP11129)
- 0.379 Cbot-2019-005 (RSP11133)
- 0.378 Carmagnola (RSP10979)
- 0.378 RKM-2018-002 (RSP11093)
- 0.374 Kush Hemp E1 (RSP11128)
- 0.369 Skywalker OG (RSP10837)
- 0.363 Santhica27 (RSP11047)
- 0.362 Skunk 18 (RSP11038)
- 0.360 Sour Raspberry (RSP10551)
- 0.359 The Gift (RSP10988)
- 0.356 Tygra (RSP10667)
- 0.353 Monoica (RSP10241)
- 0.349 Hermaphrodite Research Sample1 (RSP11049)
- 0.347 Blueberry Cheesecake (RSP10680)
- 0.347 Futura 75 (RSP10664)
- 0.344 Lovrin (RSP10658)
- 0.343 Cbot-2019-006 (RSP11134)
- 0.339 RKM-2018-026 (RSP11118)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 16
- Concordance:
- 13
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 5
- Concordance:
- 5