XUM2
SRR 14708204
General Information
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type II
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
EMF1-2 | c.476T>C | p.Leu159Pro | missense variant | moderate | contig885 | 576 | T/C |
|
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
EMF1-2 | c.1148C>T | p.Ala383Val | missense variant | moderate | contig885 | 2034 | C/T |
|
EMF1-2 | c.1187T>C | p.Leu396Ser | missense variant | moderate | contig885 | 2073 | T/C |
|
EMF1-2 | c.1189G>A | p.Ala397Thr | missense variant | moderate | contig885 | 2075 | G/A |
|
EMF1-2 | c.1199G>A | p.Arg400Lys | missense variant | moderate | contig885 | 2085 | G/A |
|
EMF1-2 | c.1828A>G | p.Ile610Val | missense variant | moderate | contig885 | 2714 | A/G |
|
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.3002A>G | p.Tyr1001Cys | missense variant | moderate | contig2621 | 343045 | A/G | |
PHL-2 | c.3033T>G | p.Cys1011Trp | missense variant | moderate | contig2621 | 343076 | T/G | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
AAE1-1 | c.454A>G | p.Lys152Glu | missense variant | moderate | contig606 | 3243817 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
ELF3 | c.305G>A | p.Arg102His | missense variant | moderate | contig97 | 242011 | G/A |
|
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 |
c.1803_1805d |
p.His601del | disruptive inframe deletion | moderate | contig97 | 244625 | ACAT/A |
|
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.2203C>A | p.His735Asn | missense variant | moderate | contig97 | 245034 | C/A |
|
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
AAE1-2 | c.205T>A | p.Ser69Thr | missense variant | moderate | contig81 | 209167 | T/A |
|
AAE1-2 | c.1061G>A | p.Arg354Lys | missense variant | moderate | contig81 | 210023 | G/A |
|
AAE1-2 | c.1102C>A | p.His368Asn | missense variant | moderate | contig81 | 210064 | C/A |
|
AAE1-2 | c.1115A>G | p.Glu372Gly | missense variant | moderate | contig81 | 210077 | A/G |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 | c.19C>G | p.Pro7Ala | missense variant | moderate | contig1891 | 889373 | G/C |
|
PIE1-2 | c.5884G>A | p.Gly1962Ser | missense variant | moderate | contig1460 | 1185715 | C/T | |
PIE1-2 | c.932C>T | p.Ser311Leu | missense variant | moderate | contig1460 | 1192466 | G/A |
|
EMF1-1 | c.62C>G | p.Thr21Ser | missense variant | moderate | contig883 | 268910 | C/G |
|
EMF1-1 | c.476A>T | p.Asn159Ile | missense variant | moderate | contig883 | 269965 | A/T |
|
FLD | c.2964C>A | p.Asp988Glu | missense variant | moderate | contig1450 | 2044029 | G/T | |
FLD | c.2869C>T | p.His957Tyr | missense variant | moderate | contig1450 | 2044163 | G/A |
|
FLD | c.2831A>G | p.Glu944Gly | missense variant | moderate | contig1450 | 2044201 | T/C |
|
AAE1-3 | c.382T>C | p.Tyr128His | missense variant | moderate | contig976 | 1083643 | A/G |
|
AAE1-3 | c.367C>T | p.Arg123Trp | missense variant | moderate | contig976 | 1083658 | G/A |
|
AAE1-3 | c.293A>G | p.Asp98Gly | missense variant | moderate | contig976 | 1083732 | T/C |
|
AAE1-3 | c.284A>T | p.Glu95Val | missense variant | moderate | contig976 | 1083741 | T/A |
|
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
Nearest genetic relatives (All Samples)
- 0.219 KYRG-11 (RSP11051)
- 0.219 KYRG-151 (RSP11052)
- 0.225 XHC2 (SRR14708210)
- 0.232 XGL1 (SRR14708209)
- 0.236 Kyrgyz Gold (RSP11054)
- 0.238 KYRG-21 (RSP11053)
- 0.241 Santhica27 (RSP10056)
- 0.243 Tisza (RSP10659)
- 0.244 USO 31 (RSP10981)
- 0.247 Santhica27 (RSP11047)
- 0.247 USO 31 (RSP10983)
- 0.248 USO31 (RSP10233)
- 0.248 XUM1 (SRR14708205)
- 0.249 XHC1 (SRR14708212)
- 0.252 Lovrin (RSP10658)
- 0.254 Diana (RSP10235)
- 0.254 Santhica 27 (RSP10665)
- 0.255 Monoica (RSP10241)
- 0.256 Tygra (RSP10667)
- 0.256 Santhica27 (RSP11046)
Nearest genetic relatives (Base Tree)
- 0.228 Kyrgyz Gold (RSP11054)
- 0.237 KYRG-11 (RSP11051)
- 0.246 Tisza (RSP10659)
- 0.247 Lovrin (RSP10658)
- 0.255 Fedora 17 (RSP10661)
- 0.256 Tisza (RSP11044)
- 0.257 Futura 75 (RSP10664)
- 0.257 Tygra (RSP10667)
- 0.257 USO 31 (RSP10981)
- 0.259 Santhica27 (RSP11047)
- 0.260 Monoica (RSP10241)
- 0.265 Ivory (RSP10668)
- 0.266 Carmagnola (RSP11037)
- 0.271 Jiangji (RSP10653)
- 0.272 Carmagnola (RSP10979)
- 0.273 Feral (RSP10890)
- 0.308 Kimbo Slice (RSP10997)
- 0.309 Liberty Haze (RSP11000)
- 0.313 Recon (RSP10755)
- 0.319 Hermaphrodite ResearchSample2 (RSP11050)
Most genetically distant strains (All Samples)
- 0.458 Cherry Blossom (RSP11318)
- 0.454 Cherry Blossom (RSP11323)
- 0.447 Cherry Blossom (RSP11301)
- 0.441 Chem 91 (RSP11185)
- 0.433 Cherry Blossom (RSP11300)
- 0.432 Chematonic -Cannatonic x Chemdawg- (RSP11394)
- 0.430 Cherry Blossom (RSP11328)
- 0.429 Cherry Blossom (RSP11331)
- 0.427 JL x NSPM1 4 (RSP11482)
- 0.426 GG4 (RSP11978)
- 0.423 Cherry Blossom (RSP11325)
- 0.422 Cherry Blossom (RSP11312)
- 0.421 AVIDEKEL 2 0 (RSP11174)
- 0.419 Cherry Blossom (RSP11306)
- 0.419 Cherry Blossom (RSP11322)
- 0.418 JL Cross 13 (RSP11514)
- 0.418 Wife (RSP11148)
- 0.416 Unknown--Cherry Wine---001- (RSP11268)
- 0.416 QQD2 (RSP11450)
- 0.415 Wilburs Great Adventure (RSP11727)
Most genetically distant strains (Base Tree)
- 0.403 Cbot-2019-005 (RSP11133)
- 0.402 RKM-2018-002 (RSP11093)
- 0.399 Cbot-2019-001 (RSP11129)
- 0.397 RKM-2018-028 (RSP11120)
- 0.390 RKM-2018-032 (RSP11124)
- 0.389 JL yellow (RSP11075)
- 0.389 Kush Hemp E1 (RSP11128)
- 0.388 RKM-2018-018 (RSP11110)
- 0.386 Hermaphrodite Research Sample1 (RSP11049)
- 0.385 RKM-2018-006 (RSP11097)
- 0.377 Cbot-2019-004 (RSP11132)
- 0.375 RKM-2018-009 (RSP11100)
- 0.374 RKM-2018-033 (RSP11125)
- 0.372 Cherry (RSP11143)
- 0.372 Italian Kiss (RSP11034)
- 0.371 RKM-2018-004 (RSP11096)
- 0.371 Skywalker OG (RSP10837)
- 0.370 RKM-2018-020 (RSP11112)
- 0.370 Sour Raspberry (RSP10551)
- 0.367 Blue Dream (RSP11033)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 9
- Concordance:
- 7
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 5
- Concordance:
- 5