XUM1
SRR 14708205
General Information
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
CBDAS | c.221C>G | p.Thr74Ser | missense variant | moderate | contig1772 | 2082447 | C/G | |
CBDAS | c.503A>G | p.Asn168Ser | missense variant | moderate | contig1772 | 2082729 | A/G | |
CBDAS | c.1420A>C | p.Lys474Gln | missense variant | moderate | contig1772 | 2083646 | A/C | |
CBDAS | c.1628G>A | p.Arg543His | missense variant | moderate | contig1772 | 2083854 | G/A |
|
Variants (Select Genes of Interest)
PKSA-3b | c.893C>T | p.Ala298Val | missense variant | moderate | contig705 | 2271045 | G/A |
|
GPPs1 | c.472T>A | p.Leu158Met | missense variant | moderate | contig676 | 168721 | T/A |
|
GPPs1 |
c.866_877del |
p.Leu289_Glu |
stop gained & disruptive inframe deletion | high | contig676 | 169655 |
TTACTAGAGCTA |
|
EMF1-2 | c.1828A>G | p.Ile610Val | missense variant | moderate | contig885 | 2714 | A/G |
|
EMF1-2 | c.2008C>T | p.Pro670Ser | missense variant | moderate | contig885 | 2894 | C/T |
|
PHL-2 | c.455A>C | p.Asp152Ala | missense variant | moderate | contig2621 | 339191 | A/C | |
PHL-2 | c.722G>A | p.Gly241Glu | missense variant | moderate | contig2621 | 339860 | G/A |
|
PHL-2 | c.977A>C | p.His326Pro | missense variant | moderate | contig2621 | 340255 | A/C |
|
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.2467T>C | p.Ser823Pro | missense variant | moderate | contig2621 | 342510 | T/C |
|
PHL-2 | c.2564T>A | p.Phe855Tyr | missense variant | moderate | contig2621 | 342607 | T/A | |
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PHL-2 | c.2596G>A | p.Asp866Asn | missense variant | moderate | contig2621 | 342639 | G/A |
|
PHL-2 | c.2830A>C | p.Asn944His | missense variant | moderate | contig2621 | 342873 | A/C |
|
PHL-2 | c.2933G>T | p.Arg978Leu | missense variant | moderate | contig2621 | 342976 | G/T | |
PHL-2 | c.2936T>G | p.Val979Gly | missense variant | moderate | contig2621 | 342979 | T/G |
|
PHL-2 | c.3002A>G | p.Tyr1001Cys | missense variant | moderate | contig2621 | 343045 | A/G | |
PHL-2 | c.3027G>T | p.Lys1009Asn | missense variant | moderate | contig2621 | 343070 | G/T | |
PHL-2 | c.3033T>G | p.Cys1011Trp | missense variant | moderate | contig2621 | 343076 | T/G | |
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PHL-2 | c.3467A>G | p.Gln1156Arg | missense variant | moderate | contig2621 | 343510 | A/G | |
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
PKSG-4b | c.229G>A | p.Gly77Ser | missense variant | moderate | contig700 | 2724206 | C/T |
|
PKSG-4b | c.216G>C | p.Leu72Phe | missense variant | moderate | contig700 | 2724219 | C/G |
|
PKSG-4b | c.206T>C | p.Leu69Ser | missense variant | moderate | contig700 | 2724229 | A/G |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
DXR-2 | c.731G>A | p.Arg244His | missense variant | moderate | contig380 | 286950 | C/T |
|
ELF3 | c.275C>A | p.Pro92His | missense variant | moderate | contig97 | 241981 | C/A |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 | c.574A>G | p.Asn192Asp | missense variant | moderate | contig97 | 242280 | A/G | |
ELF3 | c.752G>T | p.Gly251Val | missense variant | moderate | contig97 | 242458 | G/T | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 |
c.1230-2_123 |
splice acceptor variant & intron variant | high | contig97 | 243676 | TAG/T | ||
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
aPT1 |
c.95_97delGT |
p.Cys32del | disruptive inframe deletion | moderate | contig121 | 2835800 | ATGT/A | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
OAC-1 | c.260C>G | p.Ser87Cys | missense variant | moderate | contig931 | 118104 | G/C |
|
OAC-1 | c.220A>G | p.Ile74Val | missense variant | moderate | contig931 | 118144 | T/C | |
HDS-2 | c.679G>C | p.Gly227Arg | missense variant | moderate | contig95 | 1990632 | G/C |
|
AAE1-2 | c.205T>A | p.Ser69Thr | missense variant | moderate | contig81 | 209167 | T/A |
|
AAE1-2 |
c.285_290dup |
p.Ser96_Ser9 |
disruptive inframe insertion | moderate | contig81 | 209243 | A/AATCCTC |
|
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 | c.374A>G | p.His125Arg | missense variant | moderate | contig81 | 209336 | A/G |
|
AAE1-2 | c.688G>A | p.Asp230Asn | missense variant | moderate | contig81 | 209650 | G/A |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
AAE1-2 | c.1061G>A | p.Arg354Lys | missense variant | moderate | contig81 | 210023 | G/A |
|
AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
|
AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
|
PHL-1 |
c.3488_3499d |
p.Ala1163_Il |
disruptive inframe deletion | moderate | contig1439 | 1485421 |
ATTCCAACACTA |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
PHL-1 | c.176G>A | p.Gly59Glu | missense variant | moderate | contig1439 | 1492817 | C/T |
|
PHL-1 | c.175G>A | p.Gly59Arg | missense variant | moderate | contig1439 | 1492818 | C/T | |
Edestin | c.41C>T | p.Ala14Val | missense variant | moderate | contig850 | 3065249 | G/A |
|
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1579T>C | p.Tyr527His | missense variant | moderate | contig1891 | 885975 | A/G |
|
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
PIE1-2 | c.6780T>A | p.Asp2260Glu | missense variant | moderate | contig1460 | 1184307 | A/T |
|
PIE1-2 | c.6653A>G | p.Asn2218Ser | missense variant | moderate | contig1460 | 1184434 | T/C | |
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.1652C>T | p.Ala551Val | missense variant | moderate | contig1460 | 1191578 | G/A |
|
PIE1-2 | c.1630G>C | p.Ala544Pro | missense variant | moderate | contig1460 | 1191600 | C/G | |
PIE1-2 | c.1289A>G | p.Asp430Gly | missense variant | moderate | contig1460 | 1192109 | T/C |
|
PIE1-2 | c.637T>A | p.Ser213Thr | missense variant | moderate | contig1460 | 1194421 | A/T | |
PIE1-2 | c.580A>G | p.Thr194Ala | missense variant | moderate | contig1460 | 1194478 | T/C |
|
EMF2 |
c.1415_1416i |
p.His474fs | frameshift variant | high | contig954 | 3056602 | A/ATT |
|
EMF2 |
c.1418_1419i |
p.Ser473_His |
disruptive inframe insertion | moderate | contig954 | 3056605 | C/CACA | |
EMF2 |
c.1419_1420i |
p.His474fs | frameshift variant | high | contig954 | 3056606 | G/GT |
|
EMF2 | c.1426G>A | p.Ala476Thr | missense variant | moderate | contig954 | 3056613 | G/A |
|
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 | c.450G>A | p.Met150Ile | missense variant | moderate | contig121 | 2830645 | G/A |
|
FLD | c.2686G>A | p.Ala896Thr | missense variant | moderate | contig1450 | 2044848 | C/T | |
FLD | c.2681T>C | p.Ile894Thr | missense variant | moderate | contig1450 | 2044853 | A/G | |
AAE1-3 | c.267T>G | p.His89Gln | missense variant | moderate | contig976 | 1083758 | A/C |
|
AAE1-3 | c.224C>T | p.Pro75Leu | missense variant | moderate | contig976 | 1083851 | G/A |
|
AAE1-3 | c.208G>C | p.Ala70Pro | missense variant | moderate | contig976 | 1083867 | C/G |
|
AAE1-3 | c.199A>C | p.Asn67His | missense variant | moderate | contig976 | 1083876 | T/G |
|
AAE1-3 | c.167A>G | p.Glu56Gly | missense variant | moderate | contig976 | 1083908 | T/C |
|
AAE1-3 | c.154G>A | p.Val52Ile | missense variant | moderate | contig976 | 1083921 | C/T |
|
AAE1-3 | c.101A>G | p.Tyr34Cys | missense variant | moderate | contig976 | 1083974 | T/C |
|
AAE1-3 | c.94A>C | p.Asn32His | missense variant | moderate | contig976 | 1083981 | T/G |
|
AAE1-3 | c.79A>G | p.Thr27Ala | missense variant | moderate | contig976 | 1083996 | T/C |
|
AAE1-3 | c.12G>A | p.Met4Ile | missense variant | moderate | contig976 | 1084063 | C/T |
|
AAE1-3 | c.11T>C | p.Met4Thr | missense variant | moderate | contig976 | 1084064 | A/G |
|
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
PKSB-3 | c.787G>A | p.Val263Met | missense variant | moderate | contig93 | 3338010 | G/A |
|
PKSB-3 | c.1399G>A | p.Gly467Ser | missense variant | moderate | contig93 | 3339506 | G/A |
|
Nearest genetic relatives (All Samples)
- 0.140 Durban Poison 1 (RSP11013)
- 0.149 Lift (RSP11378)
- 0.167 Badger (RSP11614)
- 0.167 XBL2 (SRR14708206)
- 0.170 AOAC MI 599 (RSP11762)
- 0.172 AOAC MI 567 (RSP11758)
- 0.172 AOAC MI 535 (RSP11754)
- 0.174 AOAC MI 569 (RSP11759)
- 0.176 AOAC MI 588 (RSP11760)
- 0.177 AOAC MI 548 (RSP11757)
- 0.177 XHC1 (SRR14708212)
- 0.178 AOAC MI 504 (RSP11749)
- 0.179 AOAC MI 501 (RSP11748)
- 0.179 AOAC MI 532 (RSP11752)
- 0.179 AOAC MI 597 (RSP11761)
- 0.181 AOAC MI 542 (RSP11755)
- 0.181 AOAC MI 545 (RSP11756)
- 0.184 Lifter (RSP11365)
- 0.184 Electra (RSP11366)
- 0.188 JL 4th Gen 7 (RSP11153)
Nearest genetic relatives (Base Tree)
- 0.202 KYRG-11 (RSP11051)
- 0.206 Jiangji (RSP10653)
- 0.207 UP Sunrise (RSP10989)
- 0.223 Blueberry Cheesecake (RSP10684)
- 0.229 Tygra (RSP10667)
- 0.229 Kyrgyz Gold (RSP11054)
- 0.234 Tisza (RSP11044)
- 0.235 Tisza (RSP10659)
- 0.238 Liberty Haze (RSP11000)
- 0.241 RKM-2018-029 (RSP11121)
- 0.242 USO 31 (RSP10981)
- 0.254 RKM-2018-005 (RSP11096)
- 0.255 Golden Goat 2 (RSP10991)
- 0.262 Lovrin (RSP10658)
- 0.262 Hermaphrodite Research Sample1 (RSP11049)
- 0.262 Hermaphrodite ResearchSample2 (RSP11050)
- 0.263 Futura 75 (RSP10664)
- 0.271 Carmagnola (RSP11037)
- 0.271 The Gift (RSP10988)
- 0.275 RKM-2018-032 (RSP11124)
Most genetically distant strains (All Samples)
- 0.422 80E (RSP11213)
- 0.397 JL yellow (RSP11075)
- 0.388 JL 2 (RSP11076)
- 0.381 JL 3rd Gen Mother (RSP11214)
- 0.379 JL 4th Gen 1 (RSP11193)
- 0.376 Tanao Sri 46 (RSP11486)
- 0.374 Danny Noonan (RSP11070)
- 0.367 White Label 1 (RSP11336)
- 0.362 RKM-2018-024 (RSP11116)
- 0.362 JL 4th Gen 5 (RSP11199)
- 0.359 Cbot-2019-005 (RSP11133)
- 0.358 JL 3rd Gen Father (RSP11196)
- 0.357 80E (RSP11212)
- 0.357 IUP3 (SRR14708256)
- 0.356 Ringo s Gift Katie s Cut (RSP11624)
- 0.356 Wife (RSP11148)
- 0.354 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.351 YMCM (RSP11416)
- 0.351 Carmagnola (RSP11202)
- 0.351 UP Sunset (RSP11256)
Most genetically distant strains (Base Tree)
- 0.390 JL yellow (RSP11075)
- 0.381 Cbot-2019-005 (RSP11133)
- 0.363 Cbot-2019-004 (RSP11132)
- 0.358 Carmagnola (RSP10979)
- 0.357 Kush Hemp E1 (RSP11128)
- 0.338 QUEEN JESUS (RSP10105)
- 0.332 RKM-2018-006 (RSP11097)
- 0.330 RKM-2018-034 (RSP11126)
- 0.330 RKM-2018-022 (RSP11114)
- 0.319 Cbot-2019-001 (RSP11129)
- 0.319 Cherry (RSP11143)
- 0.317 RKM-2018-031 (RSP11123)
- 0.316 Gold Cracker (RSP11048)
- 0.315 RKM-2018-027 (RSP11119)
- 0.315 Durban Poison (RSP11014)
- 0.315 RKM-2018-002 (RSP11093)
- 0.310 RKM-2018-023 (RSP11115)
- 0.310 RKM-2018-003 (RSP11094)
- 0.307 Cherry (RSP11142)
- 0.305 RKM-2018-026 (RSP11118)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 6
- Concordance:
- 5
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 3
- Concordance:
- 3