XBL2
SRR 14708206
General Information
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
CBDAS | c.221C>G | p.Thr74Ser | missense variant | moderate | contig1772 | 2082447 | C/G | |
CBDAS | c.503A>G | p.Asn168Ser | missense variant | moderate | contig1772 | 2082729 | A/G | |
CBDAS | c.587A>G | p.Asn196Ser | missense variant | moderate | contig1772 | 2082813 | A/G | |
CBDAS | c.1131C>G | p.Asn377Lys | missense variant | moderate | contig1772 | 2083357 | C/G |
|
CBDAS | c.1420A>C | p.Lys474Gln | missense variant | moderate | contig1772 | 2083646 | A/C |
Variants (Select Genes of Interest)
GPPs1 | c.160A>G | p.Lys54Glu | missense variant | moderate | contig676 | 168409 | A/G |
|
GPPs1 | c.744C>G | p.Asp248Glu | missense variant | moderate | contig676 | 168993 | C/G |
|
EMF1-2 | c.476T>C | p.Leu159Pro | missense variant | moderate | contig885 | 576 | T/C |
|
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
EMF1-2 | c.1148C>T | p.Ala383Val | missense variant | moderate | contig885 | 2034 | C/T |
|
EMF1-2 | c.1187T>C | p.Leu396Ser | missense variant | moderate | contig885 | 2073 | T/C |
|
EMF1-2 | c.1189G>A | p.Ala397Thr | missense variant | moderate | contig885 | 2075 | G/A |
|
EMF1-2 | c.1199G>A | p.Arg400Lys | missense variant | moderate | contig885 | 2085 | G/A |
|
EMF1-2 | c.1409G>A | p.Arg470Lys | missense variant | moderate | contig885 | 2295 | G/A |
|
EMF1-2 | c.1828A>G | p.Ile610Val | missense variant | moderate | contig885 | 2714 | A/G |
|
EMF1-2 | c.2256A>T | p.Lys752Asn | missense variant | moderate | contig885 | 3142 | A/T |
|
PHL-2 | c.932T>C | p.Leu311Pro | missense variant | moderate | contig2621 | 340210 | T/C | |
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.2624C>T | p.Ser875Phe | missense variant | moderate | contig2621 | 342667 | C/T | |
PHL-2 | c.2756A>C | p.Glu919Ala | missense variant | moderate | contig2621 | 342799 | A/C | |
PHL-2 | c.3027G>T | p.Lys1009Asn | missense variant | moderate | contig2621 | 343070 | G/T | |
PHL-2 | c.3033T>G | p.Cys1011Trp | missense variant | moderate | contig2621 | 343076 | T/G | |
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PHL-2 | c.3467A>G | p.Gln1156Arg | missense variant | moderate | contig2621 | 343510 | A/G | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
PKSG-2a | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1944442 | A/C |
|
PKSG-2a | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1944445 | A/C |
|
PKSG-2a | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1944446 | C/T |
|
PKSG-2a | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1944456 | G/C |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
AAE1-1 | c.454A>G | p.Lys152Glu | missense variant | moderate | contig606 | 3243817 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
ELF3 | c.305G>A | p.Arg102His | missense variant | moderate | contig97 | 242011 | G/A |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 | c.757C>T | p.Pro253Ser | missense variant | moderate | contig97 | 242463 | C/T | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 |
c.1803_1805d |
p.His601del | disruptive inframe deletion | moderate | contig97 | 244625 | ACAT/A |
|
ELF3 | c.1832A>G | p.Tyr611Cys | missense variant | moderate | contig97 | 244663 | A/G |
|
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.2128C>G | p.His710Asp | missense variant | moderate | contig97 | 244959 | C/G |
|
ELF3 | c.2140C>T | p.Pro714Ser | missense variant | moderate | contig97 | 244971 | C/T | |
ELF3 | c.2141C>G | p.Pro714Arg | missense variant | moderate | contig97 | 244972 | C/G | |
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
ELF3 | c.2203C>A | p.His735Asn | missense variant | moderate | contig97 | 245034 | C/A |
|
ELF5 | c.520A>G | p.Thr174Ala | missense variant | moderate | contig382 | 880382 | A/G | |
aPT1 |
c.95_97delGT |
p.Cys32del | disruptive inframe deletion | moderate | contig121 | 2835800 | ATGT/A | |
AAE1-2 | c.952delC | p.Gln318fs | frameshift variant | high | contig81 | 209912 | AC/A |
|
AAE1-2 | c.953A>G | p.Gln318Arg | missense variant | moderate | contig81 | 209915 | A/G |
|
AAE1-2 | c.955C>T | p.Arg319Cys | missense variant | moderate | contig81 | 209917 | C/T |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
AAE1-2 | c.1090A>G | p.Lys364Glu | missense variant | moderate | contig81 | 210052 | A/G |
|
AAE1-2 | c.1102C>A | p.His368Asn | missense variant | moderate | contig81 | 210064 | C/A |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
Edestin | c.41C>T | p.Ala14Val | missense variant | moderate | contig850 | 3065249 | G/A |
|
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 | c.35G>A | p.Cys12Tyr | missense variant | moderate | contig1891 | 889357 | C/T | |
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.5884G>A | p.Gly1962Ser | missense variant | moderate | contig1460 | 1185715 | C/T | |
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
PIE1-2 | c.710C>T | p.Pro237Leu | missense variant | moderate | contig1460 | 1193804 | G/A | |
PIE1-2 | c.706T>C | p.Tyr236His | missense variant | moderate | contig1460 | 1193808 | A/G | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
EMF1-1 | c.62C>G | p.Thr21Ser | missense variant | moderate | contig883 | 268910 | C/G |
|
EMF1-1 | c.389G>A | p.Arg130Gln | missense variant | moderate | contig883 | 269878 | G/A |
|
EMF1-1 | c.476A>T | p.Asn159Ile | missense variant | moderate | contig883 | 269965 | A/T |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
FLD | c.2981T>C | p.Met994Thr | missense variant | moderate | contig1450 | 2044012 | A/G | |
FLD | c.2964C>A | p.Asp988Glu | missense variant | moderate | contig1450 | 2044029 | G/T | |
FLD | c.2953G>A | p.Ala985Thr | missense variant | moderate | contig1450 | 2044040 | C/T |
|
FLD | c.2869C>T | p.His957Tyr | missense variant | moderate | contig1450 | 2044163 | G/A |
|
FLD | c.2831A>G | p.Glu944Gly | missense variant | moderate | contig1450 | 2044201 | T/C |
|
FLD | c.2686G>A | p.Ala896Thr | missense variant | moderate | contig1450 | 2044848 | C/T | |
FLD | c.2681T>C | p.Ile894Thr | missense variant | moderate | contig1450 | 2044853 | A/G | |
AAE1-3 | c.425T>C | p.Leu142Pro | missense variant | moderate | contig976 | 1083600 | A/G |
|
AAE1-3 | c.382T>C | p.Tyr128His | missense variant | moderate | contig976 | 1083643 | A/G |
|
AAE1-3 | c.367C>T | p.Arg123Trp | missense variant | moderate | contig976 | 1083658 | G/A |
|
AAE1-3 | c.293A>G | p.Asp98Gly | missense variant | moderate | contig976 | 1083732 | T/C |
|
AAE1-3 | c.267T>G | p.His89Gln | missense variant | moderate | contig976 | 1083758 | A/C |
|
AAE1-3 | c.167A>G | p.Glu56Gly | missense variant | moderate | contig976 | 1083908 | T/C |
|
AAE1-3 | c.154G>A | p.Val52Ile | missense variant | moderate | contig976 | 1083921 | C/T |
|
AAE1-3 | c.101A>G | p.Tyr34Cys | missense variant | moderate | contig976 | 1083974 | T/C |
|
AAE1-3 | c.79A>G | p.Thr27Ala | missense variant | moderate | contig976 | 1083996 | T/C |
|
AAE1-3 | c.12G>A | p.Met4Ile | missense variant | moderate | contig976 | 1084063 | C/T |
|
AAE1-3 | c.11T>C | p.Met4Thr | missense variant | moderate | contig976 | 1084064 | A/G |
|
PKSB-3 | c.721G>A | p.Ala241Thr | missense variant | moderate | contig93 | 3337039 | G/A |
|
PKSB-3 | c.1652A>G | p.Glu551Gly | missense variant | moderate | contig93 | 3339759 | A/G |
|
PKSB-3 | c.1946C>T | p.Pro649Leu | missense variant | moderate | contig93 | 3340053 | C/T |
|
Nearest genetic relatives (All Samples)
- 0.167 XUM1 (SRR14708205)
- 0.175 AOAC MI 533 (RSP11753)
- 0.179 AOAC MI 588 (RSP11760)
- 0.181 Electra (RSP11366)
- 0.181 AOAC MI 597 (RSP11761)
- 0.183 Badger (RSP11614)
- 0.185 AOAC MI 535 (RSP11754)
- 0.185 AOAC MI 504 (RSP11749)
- 0.185 AOAC MI 545 (RSP11756)
- 0.186 AOAC MI 599 (RSP11762)
- 0.187 AOAC MI 501 (RSP11748)
- 0.187 AOAC MI 532 (RSP11752)
- 0.190 AOAC MI 508 (RSP11750)
- 0.191 AOAC MI 569 (RSP11759)
- 0.196 Doug s Varin (RSP11243)
- 0.197 AOAC MI 567 (RSP11758)
- 0.199 AOAC MI 548 (RSP11757)
- 0.200 AOAC MI 542 (RSP11755)
- 0.202 Rest (RSP11377)
- 0.205 Lift (RSP11378)
Nearest genetic relatives (Base Tree)
- 0.244 UP Sunrise (RSP10989)
- 0.245 Tisza (RSP10659)
- 0.245 Recon (RSP10755)
- 0.246 KYRG-11 (RSP11051)
- 0.250 Liberty Haze (RSP11000)
- 0.263 Futura 75 (RSP10664)
- 0.268 Jiangji (RSP10653)
- 0.269 Durban Poison (RSP11014)
- 0.273 RKM-2018-029 (RSP11121)
- 0.275 USO 31 (RSP10981)
- 0.279 RKM-2018-019 (RSP11111)
- 0.282 Feral (RSP10890)
- 0.284 RKM-2018-023 (RSP11115)
- 0.287 Carmagnola (RSP11037)
- 0.287 Tisza (RSP11044)
- 0.292 Cherry (RSP11142)
- 0.293 Golden Goat 2 (RSP10991)
- 0.296 CST (RSP11002)
- 0.297 Lovrin (RSP10658)
- 0.299 Kyrgyz Gold (RSP11054)
Most genetically distant strains (All Samples)
- 0.426 80E (RSP11213)
- 0.424 JL yellow (RSP11075)
- 0.421 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.404 JL 2 (RSP11076)
- 0.394 Cherry Blossom (RSP11323)
- 0.392 Star Dawg (RSP11352)
- 0.387 Danny Noonan (RSP11070)
- 0.385 JL 4th Gen 1 (RSP11193)
- 0.384 JL 3rd Gen Mother (RSP11214)
- 0.382 Wife (RSP11148)
- 0.382 Tanao Sri 46 (RSP11486)
- 0.381 UP Sunset (RSP11256)
- 0.379 80E (RSP11211)
- 0.377 JL 4th Gen 5 (RSP11199)
- 0.377 Northern Lights (RSP11501)
- 0.376 80E (RSP11212)
- 0.376 Cherry Blossom (RSP11309)
- 0.375 Snoops Dream (RSP11031)
- 0.373 Cherry Blossom (RSP11298)
- 0.366 Sour D (RSP11343)
Most genetically distant strains (Base Tree)
- 0.431 JL yellow (RSP11075)
- 0.385 RKM-2018-034 (RSP11126)
- 0.382 Skywalker OG (RSP10837)
- 0.381 Kush Hemp E1 (RSP11128)
- 0.378 RKM-2018-002 (RSP11093)
- 0.376 RKM-2018-003 (RSP11094)
- 0.374 RKM-2018-033 (RSP11125)
- 0.371 Cbot-2019-005 (RSP11133)
- 0.368 Cbot-2019-004 (RSP11132)
- 0.361 Blue Dream (RSP11033)
- 0.360 RKM-2018-006 (RSP11097)
- 0.349 Monoica (RSP10241)
- 0.343 RKM-2018-032 (RSP11124)
- 0.339 QUEEN JESUS (RSP10105)
- 0.336 RKM-2018-026 (RSP11118)
- 0.335 Black Beauty (RSP11035)
- 0.333 Gold Cracker (RSP11048)
- 0.333 Blueberry Cheesecake (RSP10672)
- 0.331 RKM-2018-020 (RSP11112)
- 0.329 RKM-2018-027 (RSP11119)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 15
- Concordance:
- 13
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 2
- Concordance:
- 2