XHC2
SRR 14708210
General Information
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
PHL-2 | c.932T>C | p.Leu311Pro | missense variant | moderate | contig2621 | 340210 | T/C | |
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.2564T>A | p.Phe855Tyr | missense variant | moderate | contig2621 | 342607 | T/A | |
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PHL-2 | c.2624C>T | p.Ser875Phe | missense variant | moderate | contig2621 | 342667 | C/T | |
PHL-2 | c.2933G>T | p.Arg978Leu | missense variant | moderate | contig2621 | 342976 | G/T | |
PHL-2 | c.2936T>G | p.Val979Gly | missense variant | moderate | contig2621 | 342979 | T/G |
|
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PHL-2 | c.3467A>G | p.Gln1156Arg | missense variant | moderate | contig2621 | 343510 | A/G | |
PHL-2 |
c.3556_3557d |
p.Lys1186fs | frameshift variant | high | contig2621 | 343598 | GAA/G | |
PKSG-4b | c.554A>G | p.Tyr185Cys | missense variant | moderate | contig700 | 2721119 | T/C |
|
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
PKSG-4b | c.238T>C | p.Phe80Leu | missense variant | moderate | contig700 | 2724197 | A/G |
|
PKSG-4b | c.229G>A | p.Gly77Ser | missense variant | moderate | contig700 | 2724206 | C/T |
|
PKSG-4b | c.216G>C | p.Leu72Phe | missense variant | moderate | contig700 | 2724219 | C/G |
|
PKSG-4b | c.206T>C | p.Leu69Ser | missense variant | moderate | contig700 | 2724229 | A/G |
|
PKSG-4b | c.143G>A | p.Arg48Gln | missense variant | moderate | contig700 | 2724292 | C/T |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
ELF4 | c.144T>A | p.Asp48Glu | missense variant | moderate | contig869 | 622426 | A/T |
|
ELF3 | c.305G>A | p.Arg102His | missense variant | moderate | contig97 | 242011 | G/A |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 | c.574A>G | p.Asn192Asp | missense variant | moderate | contig97 | 242280 | A/G | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
ELF3 | c.2203C>A | p.His735Asn | missense variant | moderate | contig97 | 245034 | C/A |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
OAC-1 | c.260C>G | p.Ser87Cys | missense variant | moderate | contig931 | 118104 | G/C |
|
HDS-2 | c.679G>C | p.Gly227Arg | missense variant | moderate | contig95 | 1990632 | G/C |
|
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 | c.19C>G | p.Pro7Ala | missense variant | moderate | contig1891 | 889373 | G/C |
|
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
PIE1-2 | c.1630G>C | p.Ala544Pro | missense variant | moderate | contig1460 | 1191600 | C/G | |
PIE1-2 | c.1289A>G | p.Asp430Gly | missense variant | moderate | contig1460 | 1192109 | T/C |
|
EMF2 | c.133T>C | p.Phe45Leu | missense variant | moderate | contig954 | 3048322 | T/C |
|
EMF2 |
c.1415_1416i |
p.His474fs | frameshift variant | high | contig954 | 3056602 | A/ATT |
|
EMF2 |
c.1418_1419i |
p.Ser473_His |
disruptive inframe insertion | moderate | contig954 | 3056605 | C/CACA | |
EMF2 |
c.1419_1420i |
p.His474fs | frameshift variant | high | contig954 | 3056606 | G/GT |
|
EMF1-1 | c.389G>A | p.Arg130Gln | missense variant | moderate | contig883 | 269878 | G/A |
|
EMF1-1 | c.476A>T | p.Asn159Ile | missense variant | moderate | contig883 | 269965 | A/T |
|
FT | c.240C>G | p.Asn80Lys | missense variant | moderate | contig1561 | 3124664 | C/G |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
FLD | c.2981T>C | p.Met994Thr | missense variant | moderate | contig1450 | 2044012 | A/G | |
FLD | c.2964C>A | p.Asp988Glu | missense variant | moderate | contig1450 | 2044029 | G/T | |
FLD | c.2929T>C | p.Phe977Leu | missense variant | moderate | contig1450 | 2044103 | A/G | |
FLD | c.2318T>A | p.Phe773Tyr | missense variant | moderate | contig1450 | 2045422 | A/T |
|
FLD | c.1376T>C | p.Ile459Thr | missense variant | moderate | contig1450 | 2046658 | A/G |
|
FLD | c.641C>A | p.Ser214Tyr | missense variant | moderate | contig1450 | 2047393 | G/T |
|
FLD | c.125G>A | p.Ser42Asn | missense variant | moderate | contig1450 | 2047909 | C/T | |
AAE1-3 | c.416T>C | p.Leu139Pro | missense variant | moderate | contig976 | 1083609 | A/G |
|
AAE1-3 | c.382T>C | p.Tyr128His | missense variant | moderate | contig976 | 1083643 | A/G |
|
AAE1-3 | c.125A>G | p.Glu42Gly | missense variant | moderate | contig976 | 1083950 | T/C |
|
AAE1-3 | c.3G>A | p.Met1? | start lost | high | contig976 | 1084072 | C/T | |
GGR | c.362A>T | p.Tyr121Phe | missense variant | moderate | contig2282 | 549354 | A/T |
|
PKSB-3 | c.721G>A | p.Ala241Thr | missense variant | moderate | contig93 | 3337039 | G/A |
|
Nearest genetic relatives (All Samples)
- 0.127 B52 (SRR14708255)
- 0.159 XHC1 (SRR14708212)
- 0.161 Electra (RSP11366)
- 0.173 Blue Dream (RSP11009)
- 0.174 AOAC MI 588 (RSP11760)
- 0.178 Serious Happiness (RSP10763)
- 0.186 Super Blue Dream (RSP11011)
- 0.187 AOAC MI 545 (RSP11756)
- 0.188 AOAC MI 533 (RSP11753)
- 0.188 AOAC MI 508 (RSP11750)
- 0.189 AOAC MI 504 (RSP11749)
- 0.189 AOAC MI 542 (RSP11755)
- 0.190 AOAC MI 597 (RSP11761)
- 0.192 AOAC MI 599 (RSP11762)
- 0.192 Tygra (RSP10667)
- 0.192 Doug s Varin (RSP11243)
- 0.193 AOAC MI 567 (RSP11758)
- 0.193 AOAC MI 569 (RSP11759)
- 0.195 AOAC MI 535 (RSP11754)
- 0.195 AOAC MI 501 (RSP11748)
Nearest genetic relatives (Base Tree)
- 0.158 KYRG-11 (RSP11051)
- 0.190 UP Sunrise (RSP10989)
- 0.207 Liberty Haze (RSP11000)
- 0.211 Tisza (RSP10659)
- 0.214 Santhica27 (RSP11047)
- 0.228 Golden Goat 2 (RSP10991)
- 0.232 Tygra (RSP10667)
- 0.237 Tisza (RSP11044)
- 0.248 Hermaphrodite Research Sample1 (RSP11049)
- 0.250 Ivory (RSP10668)
- 0.252 Futura 75 (RSP10664)
- 0.254 Hermaphrodite ResearchSample2 (RSP11050)
- 0.255 Kyrgyz Gold (RSP11054)
- 0.263 RKM-2018-019 (RSP11111)
- 0.265 The Gift (RSP10988)
- 0.271 Recon (RSP10755)
- 0.273 RKM-2018-031 (RSP11123)
- 0.273 RKM-2018-029 (RSP11121)
- 0.275 Lovrin (RSP10658)
- 0.275 Kimbo Slice (RSP10997)
Most genetically distant strains (All Samples)
- 0.419 Cbot-2019-005 (RSP11133)
- 0.404 80E (RSP11213)
- 0.389 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.388 JL yellow (RSP11075)
- 0.384 Star Dawg (RSP11352)
- 0.382 UP Sunset (RSP11256)
- 0.382 Cherry Blossom (RSP11323)
- 0.380 Red Eye OG (RSP11190)
- 0.379 JL 4th Gen 5 (RSP11199)
- 0.377 Skywalker OG (RSP10837)
- 0.376 JL 2 (RSP11076)
- 0.375 Abacus (RSP11266)
- 0.372 Blueberry Cheesecake (RSP10672)
- 0.372 JL 3rd Gen Mother (RSP11214)
- 0.370 Cherry Blossom (RSP11318)
- 0.369 AVIDEKEL 2 0 (RSP11174)
- 0.369 Danny Noonan (RSP11070)
- 0.365 RKM-2018-026 (RSP11118)
- 0.365 JL 4th Gen 2 (RSP11194)
- 0.362 Tanao Sri 46 (RSP11486)
Most genetically distant strains (Base Tree)
- 0.395 Cbot-2019-005 (RSP11133)
- 0.378 JL yellow (RSP11075)
- 0.373 RKM-2018-026 (RSP11118)
- 0.367 Skywalker OG (RSP10837)
- 0.365 Carmagnola (RSP10979)
- 0.351 Fedora 17 (RSP10661)
- 0.348 RKM-2018-002 (RSP11093)
- 0.348 RKM-2018-033 (RSP11125)
- 0.346 RKM-2018-006 (RSP11097)
- 0.344 Blueberry Cheesecake (RSP10672)
- 0.341 Cherry (RSP11142)
- 0.341 Black Beauty (RSP11035)
- 0.340 QUEEN JESUS (RSP10105)
- 0.336 Cbot-2019-004 (RSP11132)
- 0.332 Kush Hemp E1 (RSP11128)
- 0.329 RKM-2018-005 (RSP11096)
- 0.329 Blueberry Cheesecake (RSP10680)
- 0.328 Italian Kiss (RSP11034)
- 0.327 Monoica (RSP10241)
- 0.317 Durban Poison (RSP11014)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 15
- Concordance:
- 13
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 5
- Concordance:
- 5