Santhica 27
SRR 14708211
General Information
- Sample Name
- FSA
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type IV
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
GPPs1 | c.744C>G | p.Asp248Glu | missense variant | moderate | contig676 | 168993 | C/G |
|
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
GPPs1 | c.896A>G | p.Asn299Ser | missense variant | moderate | contig676 | 169772 | A/G |
|
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
EMF1-2 | c.1187T>C | p.Leu396Ser | missense variant | moderate | contig885 | 2073 | T/C |
|
EMF1-2 | c.2256A>T | p.Lys752Asn | missense variant | moderate | contig885 | 3142 | A/T |
|
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PHL-2 | c.2756A>C | p.Glu919Ala | missense variant | moderate | contig2621 | 342799 | A/C | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.2830A>G | p.Asn944Asp | missense variant | moderate | contig2621 | 342873 | A/G |
|
PHL-2 | c.3002A>G | p.Tyr1001Cys | missense variant | moderate | contig2621 | 343045 | A/G | |
PHL-2 | c.3027G>T | p.Lys1009Asn | missense variant | moderate | contig2621 | 343070 | G/T | |
PHL-2 | c.3033T>G | p.Cys1011Trp | missense variant | moderate | contig2621 | 343076 | T/G | |
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
DXR-2 | c.1319T>G | p.Ile440Ser | missense variant | moderate | contig380 | 285250 | A/C |
|
DXR-2 | c.431C>G | p.Ala144Gly | missense variant | moderate | contig380 | 287760 | G/C | |
aPT1 |
c.95_97delGT |
p.Cys32del | disruptive inframe deletion | moderate | contig121 | 2835800 | ATGT/A | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
OAC-1 | c.260C>G | p.Ser87Cys | missense variant | moderate | contig931 | 118104 | G/C |
|
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
AAE1-2 | c.205T>A | p.Ser69Thr | missense variant | moderate | contig81 | 209167 | T/A |
|
AAE1-2 | c.374A>G | p.His125Arg | missense variant | moderate | contig81 | 209336 | A/G |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
AAE1-2 | c.1115A>G | p.Glu372Gly | missense variant | moderate | contig81 | 210077 | A/G |
|
AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
|
AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
|
AAE1-2 | c.1434G>T | p.Glu478Asp | missense variant | moderate | contig81 | 210396 | G/T |
|
AAE1-2 | c.1541T>C | p.Val514Ala | missense variant | moderate | contig81 | 210503 | T/C |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
Edestin | c.40G>A | p.Ala14Thr | missense variant | moderate | contig850 | 3065250 | C/T |
|
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.1630G>C | p.Ala544Pro | missense variant | moderate | contig1460 | 1191600 | C/G | |
PIE1-2 | c.706T>C | p.Tyr236His | missense variant | moderate | contig1460 | 1193808 | A/G | |
EMF2 | c.722C>T | p.Thr241Ile | missense variant | moderate | contig954 | 3050302 | C/T | |
EMF2 | c.1205C>T | p.Ala402Val | missense variant & splice region variant | moderate | contig954 | 3055694 | C/T | |
EMF2 | c.1228A>G | p.Ser410Gly | missense variant | moderate | contig954 | 3055717 | A/G |
|
EMF2 | c.1315G>C | p.Ala439Pro | missense variant | moderate | contig954 | 3055804 | G/C | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 | c.198A>C | p.Lys66Asn | missense variant | moderate | contig121 | 2828854 | A/C |
|
FLD | c.2981T>C | p.Met994Thr | missense variant | moderate | contig1450 | 2044012 | A/G | |
FLD | c.2964C>A | p.Asp988Glu | missense variant | moderate | contig1450 | 2044029 | G/T | |
FLD | c.2869C>T | p.His957Tyr | missense variant | moderate | contig1450 | 2044163 | G/A |
|
FLD | c.2831A>G | p.Glu944Gly | missense variant | moderate | contig1450 | 2044201 | T/C |
|
FLD | c.2686G>A | p.Ala896Thr | missense variant | moderate | contig1450 | 2044848 | C/T | |
AAE1-3 | c.475G>A | p.Gly159Arg | missense variant | moderate | contig976 | 1083550 | C/T |
|
AAE1-3 | c.416T>C | p.Leu139Pro | missense variant | moderate | contig976 | 1083609 | A/G |
|
GGR | c.32C>A | p.Thr11Lys | missense variant | moderate | contig2282 | 549024 | C/A |
|
GGR | c.317C>T | p.Pro106Leu | missense variant | moderate | contig2282 | 549309 | C/T | |
GGR |
c.358_359del |
p.Ala120fs | frameshift variant | high | contig2282 | 549348 | ACG/A |
|
GGR | c.376G>C | p.Glu126Gln | missense variant | moderate | contig2282 | 549368 | G/C | |
GGR | c.382C>T | p.Leu128Phe | missense variant | moderate | contig2282 | 549374 | C/T |
|
GGR | c.456T>A | p.His152Gln | missense variant | moderate | contig2282 | 549448 | T/A |
|
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
GGR | c.541G>A | p.Val181Ile | missense variant | moderate | contig2282 | 549533 | G/A |
|
GGR | c.581C>T | p.Ala194Val | missense variant | moderate | contig2282 | 549573 | C/T | |
PKSB-3 | c.1901C>G | p.Ala634Gly | missense variant | moderate | contig93 | 3340008 | C/G |
|
Nearest genetic relatives (All Samples)
- 0.152 Santhica27 (RSP11047)
- 0.170 Santhica27 (RSP11046)
- 0.171 Blue Dream (RSP11004)
- 0.180 Santhica27 (RSP10056)
- 0.183 Tygra (RSP10667)
- 0.185 Fedora 17 (SRR14708222)
- 0.194 Durban Poison 1 (RSP11013)
- 0.194 Santhica 27 (RSP10665)
- 0.197 Juso14 (SRR14708259)
- 0.198 R1in136 (SRR14708237)
- 0.198 Beniko (SRR14708275)
- 0.204 Durban Poison 1 (RSP10996)
- 0.206 Ferimon 12 (SRR14708233)
- 0.206 Golden Goat 2 (RSP10991)
- 0.206 AOAC MI 567 (RSP11758)
- 0.208 AOAC MI 542 (RSP11755)
- 0.213 AOAC MI 588 (RSP11760)
- 0.213 Kompolti (SRR14708277)
- 0.213 Domnesia (RSP11184)
- 0.215 AOAC MI 508 (RSP11750)
Nearest genetic relatives (Base Tree)
- 0.164 Santhica27 (RSP11047)
- 0.231 Futura 75 (RSP10664)
- 0.231 Liberty Haze (RSP11000)
- 0.234 Tygra (RSP10667)
- 0.253 Golden Goat 2 (RSP10991)
- 0.256 Tisza (RSP10659)
- 0.271 USO 31 (RSP10981)
- 0.271 Monoica (RSP10241)
- 0.272 KYRG-11 (RSP11051)
- 0.273 Blueberry Cheesecake (RSP10684)
- 0.274 UP Sunrise (RSP10989)
- 0.285 Lovrin (RSP10658)
- 0.289 Fedora 17 (RSP10661)
- 0.294 Tisza (RSP11044)
- 0.298 Hermaphrodite ResearchSample2 (RSP11050)
- 0.302 RKM-2018-019 (RSP11111)
- 0.309 Kyrgyz Gold (RSP11054)
- 0.310 RKM-2018-020 (RSP11112)
- 0.311 Recon (RSP10755)
- 0.312 RKM-2018-028 (RSP11120)
Most genetically distant strains (All Samples)
- 0.420 Cbot-2019-005 (RSP11133)
- 0.420 JL 2 (RSP11076)
- 0.416 JL yellow (RSP11075)
- 0.410 80E (RSP11213)
- 0.408 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.408 Tanao Sri 46 (RSP11486)
- 0.407 Grape Stomper (RSP11180)
- 0.407 JL 4th Gen 5 (RSP11199)
- 0.404 JL 3rd Gen Mother (RSP11214)
- 0.404 JL 3rd Gen Mother (RSP11197)
- 0.402 Red Eye OG (RSP11190)
- 0.402 RKM-2018-002 (RSP11093)
- 0.399 Danny Noonan (RSP11070)
- 0.398 Star Dawg (RSP11352)
- 0.397 RKM-2018-033 (RSP11125)
- 0.394 White Label 1 (RSP11336)
- 0.394 Sour Tsunami x Cataract Ku (RSP11183)
- 0.393 Blueberry Cheesecake (RSP10672)
- 0.390 Tanao Sri-white 80 (RSP11621)
- 0.389 Cherry Blossom (RSP11274)
Most genetically distant strains (Base Tree)
- 0.446 JL yellow (RSP11075)
- 0.425 Cbot-2019-005 (RSP11133)
- 0.411 Blueberry Cheesecake (RSP10672)
- 0.408 RKM-2018-002 (RSP11093)
- 0.405 RKM-2018-033 (RSP11125)
- 0.397 The Gift (RSP10988)
- 0.396 Blueberry Cheesecake (RSP10680)
- 0.385 Pie Hoe (RSP11073)
- 0.377 Black Beauty (RSP11035)
- 0.371 Cbot-2019-004 (RSP11132)
- 0.371 Feral (RSP10890)
- 0.370 QUEEN JESUS (RSP10105)
- 0.368 RKM-2018-027 (RSP11119)
- 0.363 Kush Hemp E1 (RSP11128)
- 0.360 RKM-2018-034 (RSP11126)
- 0.358 RKM-2018-032 (RSP11124)
- 0.358 CST (RSP11002)
- 0.358 RKM-2018-026 (RSP11118)
- 0.357 Skywalker OG (RSP10837)
- 0.355 Skunk 18 (RSP11038)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 18
- Concordance:
- 14
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 2
- Concordance:
- 1