XHC1
SRR 14708212
General Information
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type II
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
GPPs1 | c.160A>G | p.Lys54Glu | missense variant | moderate | contig676 | 168409 | A/G |
|
GPPs1 | c.472T>A | p.Leu158Met | missense variant | moderate | contig676 | 168721 | T/A |
|
GPPs1 |
c.807_814del |
p.His270fs | frameshift variant | high | contig676 | 169595 | GTGCATTTT/G |
|
GPPs1 | c.896A>G | p.Asn299Ser | missense variant | moderate | contig676 | 169772 | A/G |
|
EMF1-2 | c.476T>C | p.Leu159Pro | missense variant | moderate | contig885 | 576 | T/C |
|
EMF1-2 | c.1409G>A | p.Arg470Lys | missense variant | moderate | contig885 | 2295 | G/A |
|
EMF1-2 | c.1828A>G | p.Ile610Val | missense variant | moderate | contig885 | 2714 | A/G |
|
EMF1-2 | c.2008C>T | p.Pro670Ser | missense variant | moderate | contig885 | 2894 | C/T |
|
EMF1-2 | c.2256A>T | p.Lys752Asn | missense variant | moderate | contig885 | 3142 | A/T |
|
EMF1-2 | c.2653A>G | p.Thr885Ala | missense variant | moderate | contig885 | 3539 | A/G |
|
PHL-2 | c.2756A>C | p.Glu919Ala | missense variant | moderate | contig2621 | 342799 | A/C | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.3002A>G | p.Tyr1001Cys | missense variant | moderate | contig2621 | 343045 | A/G | |
PHL-2 | c.3027G>T | p.Lys1009Asn | missense variant | moderate | contig2621 | 343070 | G/T | |
PHL-2 | c.3033T>G | p.Cys1011Trp | missense variant | moderate | contig2621 | 343076 | T/G | |
PKSG-4b | c.324A>C | p.Glu108Asp | missense variant | moderate | contig700 | 2721349 | T/G |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
AAE1-1 | c.1580A>G | p.Asn527Ser | missense variant | moderate | contig606 | 3242691 | T/C |
|
AAE1-1 | c.454A>G | p.Lys152Glu | missense variant | moderate | contig606 | 3243817 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
DXR-2 | c.431C>G | p.Ala144Gly | missense variant | moderate | contig380 | 287760 | G/C | |
ELF4 | c.144T>A | p.Asp48Glu | missense variant | moderate | contig869 | 622426 | A/T |
|
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF5 | c.520A>G | p.Thr174Ala | missense variant | moderate | contig382 | 880382 | A/G | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
|
AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
|
AAE1-2 | c.1434G>T | p.Glu478Asp | missense variant | moderate | contig81 | 210396 | G/T |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
PIE1-2 | c.6780T>A | p.Asp2260Glu | missense variant | moderate | contig1460 | 1184307 | A/T |
|
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.580A>G | p.Thr194Ala | missense variant | moderate | contig1460 | 1194478 | T/C |
|
EMF2 | c.722C>T | p.Thr241Ile | missense variant | moderate | contig954 | 3050302 | C/T | |
EMF1-1 | c.389G>A | p.Arg130Gln | missense variant | moderate | contig883 | 269878 | G/A |
|
EMF1-1 | c.476A>T | p.Asn159Ile | missense variant | moderate | contig883 | 269965 | A/T |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
AAE1-3 | c.416T>C | p.Leu139Pro | missense variant | moderate | contig976 | 1083609 | A/G |
|
AAE1-3 | c.403G>T | p.Asp135Tyr | missense variant | moderate | contig976 | 1083622 | C/A |
|
AAE1-3 | c.382T>C | p.Tyr128His | missense variant | moderate | contig976 | 1083643 | A/G |
|
AAE1-3 | c.367C>T | p.Arg123Trp | missense variant | moderate | contig976 | 1083658 | G/A |
|
AAE1-3 | c.296C>T | p.Pro99Leu | missense variant | moderate | contig976 | 1083729 | G/A |
|
AAE1-3 | c.293A>G | p.Asp98Gly | missense variant | moderate | contig976 | 1083732 | T/C |
|
AAE1-3 | c.284A>T | p.Glu95Val | missense variant | moderate | contig976 | 1083741 | T/A |
|
AAE1-3 | c.267T>G | p.His89Gln | missense variant | moderate | contig976 | 1083758 | A/C |
|
AAE1-3 | c.167A>G | p.Glu56Gly | missense variant | moderate | contig976 | 1083908 | T/C |
|
AAE1-3 | c.154G>A | p.Val52Ile | missense variant | moderate | contig976 | 1083921 | C/T |
|
AAE1-3 | c.125A>G | p.Glu42Gly | missense variant | moderate | contig976 | 1083950 | T/C |
|
AAE1-3 | c.101A>G | p.Tyr34Cys | missense variant | moderate | contig976 | 1083974 | T/C |
|
AAE1-3 | c.79A>G | p.Thr27Ala | missense variant | moderate | contig976 | 1083996 | T/C |
|
AAE1-3 | c.52G>A | p.Gly18Ser | missense variant | moderate | contig976 | 1084023 | C/T |
|
AAE1-3 | c.12G>A | p.Met4Ile | missense variant | moderate | contig976 | 1084063 | C/T |
|
AAE1-3 | c.11T>C | p.Met4Thr | missense variant | moderate | contig976 | 1084064 | A/G |
|
AAE1-3 | c.3G>A | p.Met1? | start lost | high | contig976 | 1084072 | C/T | |
PIE1-1 | c.1222C>G | p.Gln408Glu | missense variant | moderate | contig1225 | 2281482 | C/G | |
GGR | c.376G>C | p.Glu126Gln | missense variant | moderate | contig2282 | 549368 | G/C | |
GGR | c.382C>T | p.Leu128Phe | missense variant | moderate | contig2282 | 549374 | C/T |
|
Nearest genetic relatives (All Samples)
- 0.147 Super Blue Dream (RSP11011)
- 0.150 B52 (SRR14708255)
- 0.156 Lift (RSP11378)
- 0.156 AOAC MI 567 (RSP11758)
- 0.157 AOAC MI 597 (RSP11761)
- 0.157 AOAC MI 599 (RSP11762)
- 0.159 AOAC MI 504 (RSP11749)
- 0.159 XHC2 (SRR14708210)
- 0.165 AOAC MI 533 (RSP11753)
- 0.167 Electra (RSP11366)
- 0.169 AOAC MI 501 (RSP11748)
- 0.169 AOAC MI 588 (RSP11760)
- 0.169 AOAC MI 542 (RSP11755)
- 0.172 AOAC MI 548 (RSP11757)
- 0.172 AOAC MI 569 (RSP11759)
- 0.173 JL 4th Gen 7 (RSP11153)
- 0.173 Rest (RSP11377)
- 0.173 AOAC MI 535 (RSP11754)
- 0.173 Serious Happiness (RSP10763)
- 0.174 Blue Dream (RSP11007)
Nearest genetic relatives (Base Tree)
- 0.184 UP Sunrise (RSP10989)
- 0.188 Tisza (RSP10659)
- 0.190 KYRG-11 (RSP11051)
- 0.194 Liberty Haze (RSP11000)
- 0.225 Kyrgyz Gold (RSP11054)
- 0.230 Tygra (RSP10667)
- 0.239 Recon (RSP10755)
- 0.244 Feral (RSP10890)
- 0.252 Hermaphrodite Research Sample1 (RSP11049)
- 0.254 CST (RSP11002)
- 0.257 RKM-2018-009 (RSP11100)
- 0.262 Futura 75 (RSP10664)
- 0.262 Santhica27 (RSP11047)
- 0.262 Golden Goat 2 (RSP10991)
- 0.267 RKM-2018-027 (RSP11119)
- 0.267 RKM-2018-029 (RSP11121)
- 0.267 Tisza (RSP11044)
- 0.269 Ivory (RSP10668)
- 0.270 RKM-2018-019 (RSP11111)
- 0.271 Gold Cracker (RSP11048)
Most genetically distant strains (All Samples)
- 0.415 80E (RSP11213)
- 0.410 Danny Noonan (RSP11070)
- 0.401 Cbot-2019-005 (RSP11133)
- 0.400 Red Eye OG (RSP11190)
- 0.393 Cherry Blossom (RSP11323)
- 0.384 JL 2 (RSP11076)
- 0.381 Star Dawg (RSP11352)
- 0.377 JL yellow (RSP11075)
- 0.375 Cherry Blossom (RSP11309)
- 0.374 Black Beauty (RSP11175)
- 0.374 Skywalker OG (RSP10837)
- 0.373 Abacus (RSP11266)
- 0.372 Cherry Blossom (RSP11298)
- 0.370 Purple Strawberry AK47 1 1 (RSP11415)
- 0.367 Super Sour Diesel (RSP11191)
- 0.366 Cherry Blossom (RSP11334)
- 0.364 Cherry Blossom (RSP11328)
- 0.363 Unknown- Cherry Wine - 001 (RSP11268)
- 0.363 Tiborszallasie (RSP11210)
- 0.362 Cbot-2019-004 (RSP11132)
Most genetically distant strains (Base Tree)
- 0.410 Cbot-2019-005 (RSP11133)
- 0.383 Durban Poison (RSP11014)
- 0.375 Skywalker OG (RSP10837)
- 0.374 JL yellow (RSP11075)
- 0.363 RKM-2018-033 (RSP11125)
- 0.361 RKM-2018-002 (RSP11093)
- 0.356 Cbot-2019-004 (RSP11132)
- 0.355 QUEEN JESUS (RSP10105)
- 0.352 Black Beauty (RSP11035)
- 0.345 RKM-2018-026 (RSP11118)
- 0.344 RKM-2018-034 (RSP11126)
- 0.339 Carmagnola (RSP10979)
- 0.332 Monoica (RSP10241)
- 0.332 Carmagnola (RSP11037)
- 0.330 Kush Hemp E1 (RSP11128)
- 0.328 Sour Raspberry (RSP10551)
- 0.328 Blueberry Cheesecake (RSP10672)
- 0.323 RKM-2018-032 (RSP11124)
- 0.322 Cherry (RSP11143)
- 0.321 The Gift (RSP10988)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 12
- Concordance:
- 10