VIR 449 - Szegedi 9
SRR 14708213
General Information
- Sample Name
- HIS
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Unknown
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
GPPs1 | c.896A>G | p.Asn299Ser | missense variant | moderate | contig676 | 169772 | A/G |
|
EMF1-2 | c.2256A>T | p.Lys752Asn | missense variant | moderate | contig885 | 3142 | A/T |
|
PHL-2 | c.44G>A | p.Arg15Lys | missense variant | moderate | contig2621 | 337613 | G/A | |
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.2564T>A | p.Phe855Tyr | missense variant | moderate | contig2621 | 342607 | T/A | |
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PHL-2 | c.2624C>T | p.Ser875Phe | missense variant | moderate | contig2621 | 342667 | C/T | |
PHL-2 | c.2933G>T | p.Arg978Leu | missense variant | moderate | contig2621 | 342976 | G/T | |
PHL-2 | c.2936T>G | p.Val979Gly | missense variant | moderate | contig2621 | 342979 | T/G |
|
PHL-2 | c.3002A>G | p.Tyr1001Cys | missense variant | moderate | contig2621 | 343045 | A/G | |
PHL-2 | c.3027G>T | p.Lys1009Asn | missense variant | moderate | contig2621 | 343070 | G/T | |
PHL-2 | c.3033T>G | p.Cys1011Trp | missense variant | moderate | contig2621 | 343076 | T/G | |
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PKSG-4b | c.558-1G>A | splice acceptor variant & intron variant | high | contig700 | 2715037 | C/T |
|
|
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b |
c.353_354ins |
p.Gly119fs | frameshift variant | high | contig700 | 2721319 | T/TGG |
|
PKSG-4b | c.324A>C | p.Glu108Asp | missense variant | moderate | contig700 | 2721349 | T/G |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
ELF3 | c.305G>A | p.Arg102His | missense variant | moderate | contig97 | 242011 | G/A |
|
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 | c.574A>G | p.Asn192Asp | missense variant | moderate | contig97 | 242280 | A/G | |
ELF3 | c.757C>T | p.Pro253Ser | missense variant | moderate | contig97 | 242463 | C/T | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 | c.1832A>G | p.Tyr611Cys | missense variant | moderate | contig97 | 244663 | A/G |
|
ELF5 | c.520A>G | p.Thr174Ala | missense variant | moderate | contig382 | 880382 | A/G | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 | c.374A>G | p.His125Arg | missense variant | moderate | contig81 | 209336 | A/G |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
AAE1-2 | c.1541T>C | p.Val514Ala | missense variant | moderate | contig81 | 210503 | T/C |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
Edestin | c.231G>T | p.Glu77Asp | missense variant | moderate | contig850 | 3065059 | C/A |
|
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
PIE1-2 | c.6653A>G | p.Asn2218Ser | missense variant | moderate | contig1460 | 1184434 | T/C | |
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.2188G>A | p.Ala730Thr | missense variant | moderate | contig1460 | 1189852 | C/T | |
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
PIE1-2 | c.1630G>C | p.Ala544Pro | missense variant | moderate | contig1460 | 1191600 | C/G | |
PIE1-2 | c.982G>A | p.Glu328Lys | missense variant | moderate | contig1460 | 1192416 | C/T | |
PIE1-2 | c.710C>T | p.Pro237Leu | missense variant | moderate | contig1460 | 1193804 | G/A | |
PIE1-2 | c.637T>A | p.Ser213Thr | missense variant | moderate | contig1460 | 1194421 | A/T | |
EMF2 | c.434C>T | p.Ser145Phe | missense variant | moderate | contig954 | 3049270 | C/T | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
FT | c.175C>G | p.Leu59Val | missense variant | moderate | contig1561 | 3124599 | C/G |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 | c.198A>C | p.Lys66Asn | missense variant | moderate | contig121 | 2828854 | A/C |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
FLD | c.2981T>C | p.Met994Thr | missense variant | moderate | contig1450 | 2044012 | A/G | |
FLD | c.2964C>A | p.Asp988Glu | missense variant | moderate | contig1450 | 2044029 | G/T | |
FLD | c.2953G>A | p.Ala985Thr | missense variant | moderate | contig1450 | 2044040 | C/T |
|
AAE1-3 | c.416T>C | p.Leu139Pro | missense variant | moderate | contig976 | 1083609 | A/G |
|
AAE1-3 | c.382T>C | p.Tyr128His | missense variant | moderate | contig976 | 1083643 | A/G |
|
AAE1-3 | c.125A>G | p.Glu42Gly | missense variant | moderate | contig976 | 1083950 | T/C |
|
AAE1-3 | c.79A>G | p.Thr27Ala | missense variant | moderate | contig976 | 1083996 | T/C |
|
AAE1-3 | c.52G>A | p.Gly18Ser | missense variant | moderate | contig976 | 1084023 | C/T |
|
AAE1-3 | c.3G>A | p.Met1? | start lost | high | contig976 | 1084072 | C/T | |
GGR | c.382C>T | p.Leu128Phe | missense variant | moderate | contig2282 | 549374 | C/T |
|
GGR | c.456T>A | p.His152Gln | missense variant | moderate | contig2282 | 549448 | T/A |
|
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
GGR | c.810A>C | p.Glu270Asp | missense variant | moderate | contig2282 | 549802 | A/C |
|
PKSB-3 | c.1652A>G | p.Glu551Gly | missense variant | moderate | contig93 | 3339759 | A/G |
|
Nearest genetic relatives (All Samples)
- 0.147 AOAC MI 567 (RSP11758)
- 0.150 Lift (RSP11378)
- 0.156 AOAC MI 548 (RSP11757)
- 0.156 Serious Happiness (RSP10763)
- 0.157 AOAC MI 533 (RSP11753)
- 0.157 AOAC MI 542 (RSP11755)
- 0.159 AOAC MI 545 (RSP11756)
- 0.161 AOAC MI 508 (RSP11750)
- 0.161 AOAC MI 501 (RSP11748)
- 0.161 AOAC MI 588 (RSP11760)
- 0.163 R1in136 (SRR14708237)
- 0.165 AOAC MI 532 (RSP11752)
- 0.169 AOAC MI 535 (RSP11754)
- 0.170 AOAC MI 569 (RSP11759)
- 0.170 AOAC MI 599 (RSP11762)
- 0.173 Durban Poison 1 (RSP11013)
- 0.174 AOAC MI 504 (RSP11749)
- 0.175 B52 (SRR14708255)
- 0.176 VIR 469 (SRR14708242)
- 0.179 Blue Dream (RSP11010)
Nearest genetic relatives (Base Tree)
- 0.202 Liberty Haze (RSP11000)
- 0.214 Lovrin (RSP10658)
- 0.232 Kimbo Slice (RSP10997)
- 0.235 Hermaphrodite ResearchSample2 (RSP11050)
- 0.245 UP Sunrise (RSP10989)
- 0.246 KYRG-11 (RSP11051)
- 0.250 Santhica27 (RSP11047)
- 0.252 Kyrgyz Gold (RSP11054)
- 0.254 Futura 75 (RSP10664)
- 0.260 Tygra (RSP10667)
- 0.260 Tisza (RSP10659)
- 0.263 USO 31 (RSP10981)
- 0.265 The Gift (RSP10988)
- 0.268 Jiangji (RSP10653)
- 0.269 Golden Goat 2 (RSP10991)
- 0.270 RKM-2018-023 (RSP11115)
- 0.278 Durban Poison (RSP11014)
- 0.279 Cbot-2019-001 (RSP11129)
- 0.279 Ivory (RSP10668)
- 0.283 Blueberry Cheesecake (RSP10684)
Most genetically distant strains (All Samples)
- 0.435 80E (RSP11213)
- 0.409 JL yellow (RSP11075)
- 0.400 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.389 80E (RSP11211)
- 0.386 JL 4th Gen 5 (RSP11199)
- 0.381 Danny Noonan (RSP11070)
- 0.373 Cherry Blossom (RSP11323)
- 0.373 Red Eye OG (RSP11190)
- 0.371 JL 4th Gen 2 (RSP11194)
- 0.371 Medxotic (RSP11410)
- 0.370 Feral (RSP11205)
- 0.368 JL 3rd Gen Mother (RSP11214)
- 0.367 Tanao Sri 46 (RSP11486)
- 0.366 JL 3rd Gen Father (RSP11196)
- 0.366 Sour Tsunami (RSP11187)
- 0.365 Right Mark (RSP11628)
- 0.364 RKM-2018-006 (RSP11097)
- 0.364 RKM-2018-001 (RSP11092)
- 0.363 501st OG (RSP11241)
- 0.363 Wife (RSP11148)
Most genetically distant strains (Base Tree)
- 0.427 JL yellow (RSP11075)
- 0.370 Gold Cracker (RSP11048)
- 0.369 RKM-2018-006 (RSP11097)
- 0.359 Black Beauty (RSP11035)
- 0.359 Cbot-2019-004 (RSP11132)
- 0.359 Skunk 18 (RSP11038)
- 0.350 RKM-2018-022 (RSP11114)
- 0.350 Cbot-2019-005 (RSP11133)
- 0.345 Kush Hemp E1 (RSP11128)
- 0.344 Cherry (RSP11143)
- 0.341 RKM-2018-026 (RSP11118)
- 0.335 RKM-2018-002 (RSP11093)
- 0.333 Sour Raspberry (RSP10551)
- 0.332 Feral (RSP10890)
- 0.331 RKM-2018-034 (RSP11126)
- 0.329 RKM-2018-003 (RSP11094)
- 0.328 RKM-2018-018 (RSP11110)
- 0.325 Carmagnola (RSP10979)
- 0.325 Skywalker OG (RSP10837)
- 0.323 CST (RSP11002)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 16
- Concordance:
- 14
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 4
- Concordance:
- 4