PEU
SRR 14708215
General Information
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
EMF1-2 | c.2256A>T | p.Lys752Asn | missense variant | moderate | contig885 | 3142 | A/T |
|
EMF1-2 | c.2320T>A | p.Ser774Thr | missense variant | moderate | contig885 | 3206 | T/A |
|
PHL-2 | c.44G>A | p.Arg15Lys | missense variant | moderate | contig2621 | 337613 | G/A | |
PHL-2 | c.932T>C | p.Leu311Pro | missense variant | moderate | contig2621 | 340210 | T/C | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.2582C>G | p.Pro861Arg | missense variant | moderate | contig2621 | 342625 | C/G |
|
PHL-2 | c.2834A>G | p.Asn945Ser | missense variant | moderate | contig2621 | 342877 | A/G |
|
PHL-2 | c.3373A>G | p.Thr1125Ala | missense variant | moderate | contig2621 | 343416 | A/G | |
PHL-2 |
c.3556_3557d |
p.Lys1186fs | frameshift variant | high | contig2621 | 343598 | GAA/G | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-2a | c.73A>T | p.Ile25Leu | missense variant | moderate | contig700 | 1945561 | T/A |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
DXR-2 | c.431C>G | p.Ala144Gly | missense variant | moderate | contig380 | 287760 | G/C | |
FAD2-2 | c.331G>T | p.Glu111* | stop gained | high | contig83 | 1803038 | C/A |
|
FAD2-2 | c.256G>A | p.Gly86Arg | missense variant | moderate | contig83 | 1803113 | C/T |
|
FAD2-2 | c.153G>T | p.Arg51Ser | missense variant | moderate | contig83 | 1803216 | C/A |
|
FAD2-2 | c.58C>T | p.His20Tyr | missense variant | moderate | contig83 | 1803311 | G/A |
|
FAD2-2 | c.54T>A | p.His18Gln | missense variant | moderate | contig83 | 1803315 | A/T |
|
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 |
c.1803_1805d |
p.His601del | disruptive inframe deletion | moderate | contig97 | 244625 | ACAT/A |
|
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
ELF3 | c.2216A>G | p.His739Arg | missense variant | moderate | contig97 | 245047 | A/G | |
aPT1 | c.160A>C | p.Thr54Pro | missense variant | moderate | contig121 | 2835867 | A/C | |
aPT1 | c.670T>A | p.Ser224Thr | missense variant | moderate | contig121 | 2840278 | T/A |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1381G>A | p.Asp461Asn | missense variant | moderate | contig1891 | 886367 | C/T |
|
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 | c.35G>A | p.Cys12Tyr | missense variant | moderate | contig1891 | 889357 | C/T | |
PIE1-2 | c.1318A>G | p.Asn440Asp | missense variant | moderate | contig1460 | 1192080 | T/C | |
PIE1-2 | c.1294G>A | p.Asp432Asn | missense variant | moderate | contig1460 | 1192104 | C/T | |
PIE1-2 | c.1289A>G | p.Asp430Gly | missense variant | moderate | contig1460 | 1192109 | T/C |
|
PIE1-2 | c.1279G>A | p.Val427Ile | missense variant | moderate | contig1460 | 1192119 | C/T | |
PIE1-2 | c.710C>T | p.Pro237Leu | missense variant | moderate | contig1460 | 1193804 | G/A | |
PIE1-2 | c.706T>C | p.Tyr236His | missense variant | moderate | contig1460 | 1193808 | A/G | |
EMF2 | c.722C>T | p.Thr241Ile | missense variant | moderate | contig954 | 3050302 | C/T | |
EMF2 | c.1205C>T | p.Ala402Val | missense variant & splice region variant | moderate | contig954 | 3055694 | C/T | |
EMF2 | c.1228A>G | p.Ser410Gly | missense variant | moderate | contig954 | 3055717 | A/G |
|
EMF2 | c.1315G>C | p.Ala439Pro | missense variant | moderate | contig954 | 3055804 | G/C | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
EMF1-1 | c.242A>G | p.Lys81Arg | missense variant | moderate | contig883 | 269731 | A/G | |
aPT4 | c.80A>G | p.Lys27Arg | missense variant | moderate | contig121 | 2828736 | A/G |
|
FLD | c.125G>A | p.Ser42Asn | missense variant | moderate | contig1450 | 2047909 | C/T | |
AAE1-3 | c.382T>C | p.Tyr128His | missense variant | moderate | contig976 | 1083643 | A/G |
|
AAE1-3 | c.214G>T | p.Glu72* | stop gained | high | contig976 | 1083861 | C/A |
|
AAE1-3 | c.199A>G | p.Asn67Asp | missense variant | moderate | contig976 | 1083876 | T/C |
|
AAE1-3 | c.188A>G | p.Asn63Ser | missense variant | moderate | contig976 | 1083887 | T/C |
|
AAE1-3 | c.181G>A | p.Val61Ile | missense variant | moderate | contig976 | 1083894 | C/T |
|
AAE1-3 | c.179C>T | p.Thr60Ile | missense variant | moderate | contig976 | 1083896 | G/A |
|
AAE1-3 | c.125A>G | p.Glu42Gly | missense variant | moderate | contig976 | 1083950 | T/C |
|
AAE1-3 | c.104T>C | p.Leu35Pro | missense variant | moderate | contig976 | 1083971 | A/G |
|
AAE1-3 | c.79A>G | p.Thr27Ala | missense variant | moderate | contig976 | 1083996 | T/C |
|
AAE1-3 | c.52G>A | p.Gly18Ser | missense variant | moderate | contig976 | 1084023 | C/T |
|
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
Nearest genetic relatives (All Samples)
- 0.148 Blue Dream (RSP11010)
- 0.150 Super Blue Dream (RSP11011)
- 0.156 Blue Dream (RSP11006)
- 0.158 JL Cross 26 (RSP11527)
- 0.163 B52 (SRR14708255)
- 0.164 Serious Happiness (RSP10763)
- 0.167 Blue Dream (RSP11004)
- 0.171 Domnesia (RSP11184)
- 0.172 Blue Dream (RSP11007)
- 0.175 Liberty Haze (RSP11000)
- 0.176 AOAC MI 548 (RSP11757)
- 0.176 AOAC MI 542 (RSP11755)
- 0.181 Blueberry Cheesecake (RSP10684)
- 0.183 AOAC MI 532 (RSP11752)
- 0.185 AOAC MI 567 (RSP11758)
- 0.185 Durban Poison 1 (RSP10996)
- 0.186 Doug s Varin (RSP11243)
- 0.187 AOAC MI 535 (RSP11754)
- 0.188 PCL1 (SRR14708246)
- 0.189 AOAC MI 501 (RSP11748)
Nearest genetic relatives (Base Tree)
- 0.194 Liberty Haze (RSP11000)
- 0.219 CST (RSP11002)
- 0.221 Gold Cracker (RSP11048)
- 0.235 Blueberry Cheesecake (RSP10684)
- 0.238 Cherry (RSP11143)
- 0.239 Durban Poison (RSP11014)
- 0.246 The Gift (RSP10988)
- 0.250 UP Sunrise (RSP10989)
- 0.252 RKM-2018-031 (RSP11123)
- 0.256 RKM-2018-029 (RSP11121)
- 0.257 RKM-2018-005 (RSP11096)
- 0.259 Hermaphrodite ResearchSample2 (RSP11050)
- 0.276 Santhica27 (RSP11047)
- 0.276 Cbot-2019-001 (RSP11129)
- 0.276 RKM-2018-019 (RSP11111)
- 0.277 Recon (RSP10755)
- 0.278 RKM-2018-009 (RSP11100)
- 0.280 KYRG-11 (RSP11051)
- 0.282 RKM-2018-023 (RSP11115)
- 0.285 Kimbo Slice (RSP10997)
Most genetically distant strains (All Samples)
- 0.404 80E (RSP11213)
- 0.399 Carmaleonte (RSP11207)
- 0.398 Cbot-2019-005 (RSP11133)
- 0.398 Feral (RSP11205)
- 0.398 80E (RSP11212)
- 0.397 CS (RSP11208)
- 0.394 Feral (RSP10890)
- 0.386 JL 4th Gen 1 (RSP11193)
- 0.386 Unknown- Cherry Wine - 001 (RSP11268)
- 0.385 Cherry Blossom (RSP11323)
- 0.381 JL 4th Gen 5 (RSP11199)
- 0.379 Feral (RSP10891)
- 0.379 Danny Noonan (RSP11070)
- 0.376 JL 3rd Gen Mother (RSP11214)
- 0.376 JL 3rd Gen Mother (RSP11197)
- 0.376 JL yellow (RSP11075)
- 0.375 Carmagnola (RSP10979)
- 0.371 JL 4th Gen 2 (RSP11194)
- 0.370 80E (RSP11211)
- 0.369 Cherry Blossom (RSP11318)
Most genetically distant strains (Base Tree)
- 0.426 Cbot-2019-005 (RSP11133)
- 0.423 Carmagnola (RSP10979)
- 0.379 JL yellow (RSP11075)
- 0.379 Skywalker OG (RSP10837)
- 0.376 Feral (RSP10890)
- 0.353 RKM-2018-026 (RSP11118)
- 0.352 Fedora 17 (RSP10661)
- 0.350 Carmagnola (RSP11037)
- 0.349 RKM-2018-034 (RSP11126)
- 0.345 Kyrgyz Gold (RSP11054)
- 0.344 Tisza (RSP11044)
- 0.341 Kush Hemp E1 (RSP11128)
- 0.332 Black Beauty (RSP11035)
- 0.329 Jiangji (RSP10653)
- 0.329 RKM-2018-002 (RSP11093)
- 0.326 Blueberry Cheesecake (RSP10680)
- 0.325 Skunk 18 (RSP11038)
- 0.321 Ivory (RSP10668)
- 0.317 Futura 75 (RSP10664)
- 0.316 Cherry (RSP11142)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 10
- Concordance:
- 9
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 4
- Concordance:
- 4