Wild Thailand
SRR 14708216
General Information
- Sample Name
- THD
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PHL-2 | c.455A>C | p.Asp152Ala | missense variant | moderate | contig2621 | 339191 | A/C | |
PHL-2 | c.977A>C | p.His326Pro | missense variant | moderate | contig2621 | 340255 | A/C |
|
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1540A>G | p.Thr514Ala | missense variant | moderate | contig2621 | 340818 | A/G | |
PHL-2 | c.3467A>G | p.Gln1156Arg | missense variant | moderate | contig2621 | 343510 | A/G | |
OAC-2 | c.22G>A | p.Val8Ile | missense variant | moderate | contig931 | 110317 | C/T |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 |
c.1230-2_123 |
splice acceptor variant & intron variant | high | contig97 | 243676 | TAG/T | ||
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.2141C>G | p.Pro714Arg | missense variant | moderate | contig97 | 244972 | C/G | |
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
ELF5 | c.853C>T | p.Pro285Ser | missense variant | moderate | contig382 | 880715 | C/T | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
aPT1 | c.864C>G | p.Asn288Lys | missense variant | moderate | contig121 | 2842407 | C/G | |
AAE1-2 | c.688G>A | p.Asp230Asn | missense variant | moderate | contig81 | 209650 | G/A |
|
AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
|
AAE1-2 | c.1434G>T | p.Glu478Asp | missense variant | moderate | contig81 | 210396 | G/T |
|
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 | c.35G>A | p.Cys12Tyr | missense variant | moderate | contig1891 | 889357 | C/T | |
PIE1-2 | c.710C>T | p.Pro237Leu | missense variant | moderate | contig1460 | 1193804 | G/A | |
PIE1-2 | c.706T>C | p.Tyr236His | missense variant | moderate | contig1460 | 1193808 | A/G | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 |
c.235_237del |
p.Val79del | conservative inframe deletion | moderate | contig121 | 2829031 | TGTA/T |
|
FLD | c.2686G>A | p.Ala896Thr | missense variant | moderate | contig1450 | 2044848 | C/T | |
FLD | c.2681T>C | p.Ile894Thr | missense variant | moderate | contig1450 | 2044853 | A/G | |
AAE1-3 | c.722G>A | p.Arg241Lys | missense variant | moderate | contig976 | 1083132 | C/T |
|
AAE1-3 | c.382T>C | p.Tyr128His | missense variant | moderate | contig976 | 1083643 | A/G |
|
AAE1-3 | c.293A>G | p.Asp98Gly | missense variant | moderate | contig976 | 1083732 | T/C |
|
AAE1-3 | c.125A>G | p.Glu42Gly | missense variant | moderate | contig976 | 1083950 | T/C |
|
AAE1-3 | c.104T>C | p.Leu35Pro | missense variant | moderate | contig976 | 1083971 | A/G |
|
GGR | c.362A>T | p.Tyr121Phe | missense variant | moderate | contig2282 | 549354 | A/T |
|
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
Nearest genetic relatives (All Samples)
- 0.128 AOAC MI 597 (RSP11761)
- 0.129 AOAC MI 588 (RSP11760)
- 0.130 AOAC MI 569 (RSP11759)
- 0.131 B52 (SRR14708255)
- 0.132 Lift (RSP11378)
- 0.132 Durban Poison 1 (RSP11013)
- 0.132 Electra (RSP11366)
- 0.132 Doug s Varin (RSP11243)
- 0.133 AOAC MI 501 (RSP11748)
- 0.133 AOAC MI 542 (RSP11755)
- 0.135 AOAC MI 533 (RSP11753)
- 0.136 AOAC MI 545 (RSP11756)
- 0.136 AOAC MI 567 (RSP11758)
- 0.137 AOAC MI 504 (RSP11749)
- 0.140 AOAC MI 599 (RSP11762)
- 0.141 AOAC MI 548 (RSP11757)
- 0.144 AOAC MI 532 (RSP11752)
- 0.149 Blue Dream (RSP11010)
- 0.150 AOAC MI 508 (RSP11750)
- 0.151 AOAC MI 535 (RSP11754)
Nearest genetic relatives (Base Tree)
- 0.173 UP Sunrise (RSP10989)
- 0.176 Liberty Haze (RSP11000)
- 0.197 Gold Cracker (RSP11048)
- 0.207 RKM-2018-022 (RSP11114)
- 0.212 The Gift (RSP10988)
- 0.214 Blueberry Cheesecake (RSP10684)
- 0.217 RKM-2018-019 (RSP11111)
- 0.227 Jiangji (RSP10653)
- 0.227 Recon (RSP10755)
- 0.230 RKM-2018-027 (RSP11119)
- 0.239 Golden Goat 2 (RSP10991)
- 0.240 Tisza (RSP10659)
- 0.242 Cbot-2019-006 (RSP11134)
- 0.243 KYRG-11 (RSP11051)
- 0.250 Durban Poison (RSP11014)
- 0.250 Hermaphrodite ResearchSample2 (RSP11050)
- 0.264 Pie Hoe (RSP11073)
- 0.266 RKM-2018-029 (RSP11121)
- 0.273 RKM-2018-031 (RSP11123)
- 0.276 RKM-2018-009 (RSP11100)
Most genetically distant strains (All Samples)
- 0.453 JL yellow (RSP11075)
- 0.425 JL 3rd Gen Mother (RSP11214)
- 0.418 Danny Noonan (RSP11070)
- 0.408 JL 4th Gen 5 (RSP11199)
- 0.408 80E (RSP11213)
- 0.403 Ivory (RSP10668)
- 0.396 R1in136 (SRR14708226)
- 0.396 80E (RSP11211)
- 0.394 JL 3rd Gen Mother (RSP11197)
- 0.387 Cherry Blossom (RSP11323)
- 0.387 Tanao Sri-white 80 (RSP11621)
- 0.386 JL 4th Gen 1 (RSP11193)
- 0.382 CS (RSP11208)
- 0.378 Feral (RSP11206)
- 0.376 Carmagnola (RSP11202)
- 0.376 Carmaleonte (RSP11207)
- 0.372 JL 3rd Gen Father (RSP11196)
- 0.371 Tiger Tail 30 (RSP11484)
- 0.366 80E (RSP11212)
- 0.364 JL 4th Gen 4 (RSP11198)
Most genetically distant strains (Base Tree)
- 0.447 JL yellow (RSP11075)
- 0.416 Ivory (RSP10668)
- 0.395 Carmagnola (RSP10979)
- 0.360 Cbot-2019-004 (RSP11132)
- 0.359 Lovrin (RSP10658)
- 0.352 Black Beauty (RSP11035)
- 0.352 Kush Hemp E1 (RSP11128)
- 0.347 Cbot-2019-005 (RSP11133)
- 0.345 Carmagnola (RSP11037)
- 0.340 Santhica27 (RSP11047)
- 0.337 Fedora 17 (RSP10661)
- 0.333 Feral (RSP10890)
- 0.331 Sour Raspberry (RSP10551)
- 0.331 RKM-2018-033 (RSP11125)
- 0.329 Futura 75 (RSP10664)
- 0.326 Monoica (RSP10241)
- 0.325 RKM-2018-002 (RSP11093)
- 0.323 RKM-2018-026 (RSP11118)
- 0.320 Blueberry Cheesecake (RSP10672)
- 0.320 Skywalker OG (RSP10837)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 17
- Concordance:
- 14
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 4
- Concordance:
- 4