R2in135
SRR 14708223
General Information
- Sample Name
- NER3
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type II
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
GPPs1 | c.865T>G | p.Leu289Val | missense variant | moderate | contig676 | 169655 | T/G |
|
GPPs1 | c.896A>G | p.Asn299Ser | missense variant | moderate | contig676 | 169772 | A/G |
|
EMF1-2 | c.2256A>T | p.Lys752Asn | missense variant | moderate | contig885 | 3142 | A/T |
|
PHL-2 | c.44G>A | p.Arg15Lys | missense variant | moderate | contig2621 | 337613 | G/A | |
PHL-2 | c.90G>C | p.Glu30Asp | missense variant | moderate | contig2621 | 337659 | G/C |
|
PHL-2 | c.92A>T | p.Asn31Ile | missense variant | moderate | contig2621 | 337661 | A/T |
|
PHL-2 | c.722G>A | p.Gly241Glu | missense variant | moderate | contig2621 | 339860 | G/A |
|
PHL-2 | c.932T>C | p.Leu311Pro | missense variant | moderate | contig2621 | 340210 | T/C | |
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.2564T>A | p.Phe855Tyr | missense variant | moderate | contig2621 | 342607 | T/A | |
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PHL-2 | c.2624C>T | p.Ser875Phe | missense variant | moderate | contig2621 | 342667 | C/T | |
PHL-2 | c.2756A>C | p.Glu919Ala | missense variant | moderate | contig2621 | 342799 | A/C | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PHL-2 | c.3467A>G | p.Gln1156Arg | missense variant | moderate | contig2621 | 343510 | A/G | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b |
c.353_354ins |
p.Gly119fs | frameshift variant | high | contig700 | 2721319 | T/TGG |
|
PKSG-4b | c.332A>T | p.Tyr111Phe | missense variant | moderate | contig700 | 2721341 | T/A |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
PKSG-4b | c.261G>C | p.Gln87His | missense variant | moderate | contig700 | 2724174 | C/G |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
OAC-2 | c.260C>G | p.Ser87Cys | missense variant | moderate | contig931 | 109979 | G/C |
|
ELF4 | c.144T>A | p.Asp48Glu | missense variant | moderate | contig869 | 622426 | A/T |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 |
c.364_366del |
p.Lys122del | conservative inframe deletion | moderate | contig97 | 242066 | AAAG/A |
|
ELF3 | c.511C>A | p.Pro171Thr | missense variant | moderate | contig97 | 242217 | C/A |
|
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 | c.574A>G | p.Asn192Asp | missense variant | moderate | contig97 | 242280 | A/G | |
ELF3 | c.757C>T | p.Pro253Ser | missense variant | moderate | contig97 | 242463 | C/T | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 | c.1366T>G | p.Leu456Val | missense variant | moderate | contig97 | 244197 | T/G |
|
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.2140C>T | p.Pro714Ser | missense variant | moderate | contig97 | 244971 | C/T | |
ELF3 | c.2141C>G | p.Pro714Arg | missense variant | moderate | contig97 | 244972 | C/G | |
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
aPT1 |
c.95_97delGT |
p.Cys32del | disruptive inframe deletion | moderate | contig121 | 2835800 | ATGT/A | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
AAE1-2 | c.205T>A | p.Ser69Thr | missense variant | moderate | contig81 | 209167 | T/A |
|
AAE1-2 | c.374A>G | p.His125Arg | missense variant | moderate | contig81 | 209336 | A/G |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
AAE1-2 | c.1102C>A | p.His368Asn | missense variant | moderate | contig81 | 210064 | C/A |
|
AAE1-2 | c.1118C>G | p.Thr373Ser | missense variant | moderate | contig81 | 210080 | C/G |
|
AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
|
AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
|
AAE1-2 | c.1541T>C | p.Val514Ala | missense variant | moderate | contig81 | 210503 | T/C |
|
PHL-1 | c.3133A>G | p.Ile1045Val | missense variant | moderate | contig1439 | 1486664 | T/C |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.489A>T | p.Lys163Asn | missense variant | moderate | contig1439 | 1490874 | T/A |
|
Edestin | c.61G>A | p.Ala21Thr | missense variant | moderate | contig850 | 3065229 | C/T |
|
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b |
c.-5_1delATA |
p.Met1del | start lost & conservative inframe deletion | high | contig700 | 1951880 | ATATTAT/A |
|
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 | c.51C>G | p.Asp17Glu | missense variant | moderate | contig1891 | 889341 | G/C |
|
HDS-1 |
c.-108+1_-10 |
splice donor variant & intron variant | high | contig1891 | 889975 | A/AC |
|
|
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.2027A>T | p.Gln676Leu | missense variant | moderate | contig1460 | 1190013 | T/A | |
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
PIE1-2 | c.1846A>G | p.Lys616Glu | missense variant | moderate | contig1460 | 1190278 | T/C |
|
PIE1-2 | c.710C>T | p.Pro237Leu | missense variant | moderate | contig1460 | 1193804 | G/A | |
PIE1-2 | c.706T>C | p.Tyr236His | missense variant | moderate | contig1460 | 1193808 | A/G | |
PIE1-2 | c.637T>A | p.Ser213Thr | missense variant | moderate | contig1460 | 1194421 | A/T | |
EMF2 | c.722C>T | p.Thr241Ile | missense variant | moderate | contig954 | 3050302 | C/T | |
EMF2 | c.963dupT | p.Ala322fs | frameshift variant | high | contig954 | 3052785 | G/GT |
|
EMF2 | c.967delA | p.Ser323fs | frameshift variant | high | contig954 | 3052788 | CA/C |
|
EMF2 | c.1183G>A | p.Glu395Lys | missense variant | moderate | contig954 | 3054195 | G/A |
|
EMF2 | c.1205C>T | p.Ala402Val | missense variant & splice region variant | moderate | contig954 | 3055694 | C/T | |
EMF2 | c.1228A>G | p.Ser410Gly | missense variant | moderate | contig954 | 3055717 | A/G |
|
EMF2 | c.1315G>C | p.Ala439Pro | missense variant | moderate | contig954 | 3055804 | G/C | |
EMF2 | c.1742C>G | p.Thr581Ser | missense variant | moderate | contig954 | 3059899 | C/G |
|
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
EMF1-1 | c.242A>G | p.Lys81Arg | missense variant | moderate | contig883 | 269731 | A/G | |
FT |
c.435_436ins |
p.Met146fs | frameshift variant | high | contig1561 | 3126671 | T/TGTAC |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 | c.198A>C | p.Lys66Asn | missense variant | moderate | contig121 | 2828854 | A/C |
|
aPT4 | c.202T>A | p.Leu68Ile | missense variant | moderate | contig121 | 2828858 | T/A |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
FLD | c.2869C>T | p.His957Tyr | missense variant | moderate | contig1450 | 2044163 | G/A |
|
FLD | c.2831A>G | p.Glu944Gly | missense variant | moderate | contig1450 | 2044201 | T/C |
|
FLD | c.2686G>A | p.Ala896Thr | missense variant | moderate | contig1450 | 2044848 | C/T | |
FLD | c.296G>A | p.Ser99Asn | missense variant | moderate | contig1450 | 2047738 | C/T |
|
AAE1-3 | c.353C>T | p.Ala118Val | missense variant | moderate | contig976 | 1083672 | G/A |
|
AAE1-3 | c.293A>G | p.Asp98Gly | missense variant | moderate | contig976 | 1083732 | T/C |
|
AAE1-3 | c.260T>C | p.Val87Ala | missense variant | moderate | contig976 | 1083765 | A/G |
|
AAE1-3 | c.52G>A | p.Gly18Ser | missense variant | moderate | contig976 | 1084023 | C/T |
|
AAE1-3 | c.45C>A | p.His15Gln | missense variant | moderate | contig976 | 1084030 | G/T |
|
GGR | c.32C>A | p.Thr11Lys | missense variant | moderate | contig2282 | 549024 | C/A |
|
GGR | c.317C>T | p.Pro106Leu | missense variant | moderate | contig2282 | 549309 | C/T | |
GGR |
c.358_359del |
p.Ala120fs | frameshift variant | high | contig2282 | 549348 | ACG/A |
|
GGR | c.376G>C | p.Glu126Gln | missense variant | moderate | contig2282 | 549368 | G/C | |
GGR | c.382C>T | p.Leu128Phe | missense variant | moderate | contig2282 | 549374 | C/T |
|
GGR | c.456T>A | p.His152Gln | missense variant | moderate | contig2282 | 549448 | T/A |
|
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
GGR | c.541G>A | p.Val181Ile | missense variant | moderate | contig2282 | 549533 | G/A |
|
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
PKSB-3 | c.509T>C | p.Val170Ala | missense variant & splice region variant | moderate | contig93 | 3336743 | T/C |
|
Nearest genetic relatives (All Samples)
- 0.155 Super Blue Dream (RSP11011)
- 0.155 B52 (SRR14708255)
- 0.159 Blue Dream (RSP11007)
- 0.160 AOAC MI 504 (RSP11749)
- 0.163 AOAC MI 535 (RSP11754)
- 0.167 Lift (RSP11378)
- 0.170 AOAC MI 599 (RSP11762)
- 0.170 AOAC MI 501 (RSP11748)
- 0.170 AOAC MI 532 (RSP11752)
- 0.172 AOAC MI 548 (RSP11757)
- 0.172 Kompolti (SRR14708277)
- 0.172 AOAC MI 533 (RSP11753)
- 0.173 AOAC MI 542 (RSP11755)
- 0.173 AOAC MI 597 (RSP11761)
- 0.174 AOAC MI 567 (RSP11758)
- 0.175 AOAC MI 569 (RSP11759)
- 0.175 AOAC MI 588 (RSP11760)
- 0.175 AOAC MI 508 (RSP11750)
- 0.175 AOAC MI 545 (RSP11756)
- 0.179 Durban Poison 1 (RSP11013)
Nearest genetic relatives (Base Tree)
- 0.192 UP Sunrise (RSP10989)
- 0.235 Liberty Haze (RSP11000)
- 0.236 Tisza (RSP10659)
- 0.254 Durban Poison (RSP11014)
- 0.268 Jiangji (RSP10653)
- 0.271 Santhica27 (RSP11047)
- 0.272 Cherry (RSP11143)
- 0.274 CST (RSP11002)
- 0.275 RKM-2018-029 (RSP11121)
- 0.276 Golden Goat 2 (RSP10991)
- 0.278 Gold Cracker (RSP11048)
- 0.279 The Gift (RSP10988)
- 0.280 Carmagnola (RSP11037)
- 0.283 KYRG-11 (RSP11051)
- 0.283 Monoica (RSP10241)
- 0.284 Tygra (RSP10667)
- 0.286 USO 31 (RSP10981)
- 0.287 Hermaphrodite Research Sample1 (RSP11049)
- 0.288 Sour Raspberry (RSP10551)
- 0.289 RKM-2018-020 (RSP11112)
Most genetically distant strains (All Samples)
- 0.426 80E (RSP11213)
- 0.426 JL 3rd Gen Father (RSP11196)
- 0.420 JL 4th Gen 5 (RSP11199)
- 0.418 Danny Noonan (RSP11070)
- 0.411 JL 4th Gen 4 (RSP11198)
- 0.406 IUP3 (SRR14708256)
- 0.406 JL 3rd Gen Mother (RSP11197)
- 0.406 JL yellow (RSP11075)
- 0.402 JL 3rd Gen Mother (RSP11214)
- 0.399 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.398 Cbot-2019-005 (RSP11133)
- 0.394 80E (RSP11212)
- 0.387 80E (RSP11211)
- 0.385 Super Sour Diesel (RSP11191)
- 0.384 JL 4th Gen 1 (RSP11193)
- 0.383 Red Eye OG (RSP11190)
- 0.383 Kush Hemp E1 (RSP11128)
- 0.379 Cbot-2019-004 (RSP11132)
- 0.378 CS (RSP11208)
- 0.378 Grape Stomper (RSP11180)
Most genetically distant strains (Base Tree)
- 0.410 JL yellow (RSP11075)
- 0.406 Cbot-2019-005 (RSP11133)
- 0.395 Cbot-2019-004 (RSP11132)
- 0.395 RKM-2018-002 (RSP11093)
- 0.392 Kush Hemp E1 (RSP11128)
- 0.379 Skywalker OG (RSP10837)
- 0.368 RKM-2018-034 (RSP11126)
- 0.365 Blueberry Cheesecake (RSP10680)
- 0.363 RKM-2018-006 (RSP11097)
- 0.362 Ivory (RSP10668)
- 0.359 Black Beauty (RSP11035)
- 0.356 RKM-2018-026 (RSP11118)
- 0.354 RKM-2018-019 (RSP11111)
- 0.353 RKM-2018-022 (RSP11114)
- 0.353 Pie Hoe (RSP11073)
- 0.349 Feral (RSP10890)
- 0.345 Carmagnola (RSP10979)
- 0.341 RKM-2018-033 (RSP11125)
- 0.341 Hermaphrodite ResearchSample2 (RSP11050)
- 0.339 Kimbo Slice (RSP10997)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 16
- Concordance:
- 12
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 4
- Concordance:
- 4