R1in136
SRR 14708225
General Information
- Sample Name
- ERM4
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
CBDAS | c.8G>A | p.Cys3Tyr | missense variant | moderate | contig1772 | 2082234 | G/A |
|
CBDAS | c.221C>G | p.Thr74Ser | missense variant | moderate | contig1772 | 2082447 | C/G | |
CBDAS | c.503A>G | p.Asn168Ser | missense variant | moderate | contig1772 | 2082729 | A/G | |
CBDAS | c.587A>G | p.Asn196Ser | missense variant | moderate | contig1772 | 2082813 | A/G | |
CBDAS | c.1420A>C | p.Lys474Gln | missense variant | moderate | contig1772 | 2083646 | A/C | |
CBDAS | c.1628G>A | p.Arg543His | missense variant | moderate | contig1772 | 2083854 | G/A |
|
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
GPPs1 | c.896A>G | p.Asn299Ser | missense variant | moderate | contig676 | 169772 | A/G |
|
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
EMF1-2 | c.1187T>C | p.Leu396Ser | missense variant | moderate | contig885 | 2073 | T/C |
|
PHL-2 | c.722G>A | p.Gly241Glu | missense variant | moderate | contig2621 | 339860 | G/A |
|
PHL-2 | c.2467T>C | p.Ser823Pro | missense variant | moderate | contig2621 | 342510 | T/C |
|
PHL-2 | c.2564T>A | p.Phe855Tyr | missense variant | moderate | contig2621 | 342607 | T/A | |
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PHL-2 | c.2596G>A | p.Asp866Asn | missense variant | moderate | contig2621 | 342639 | G/A |
|
PHL-2 | c.2756A>C | p.Glu919Ala | missense variant | moderate | contig2621 | 342799 | A/C | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PHL-2 | c.3379C>G | p.His1127Asp | missense variant | moderate | contig2621 | 343422 | C/G |
|
PHL-2 | c.3380A>G | p.His1127Arg | missense variant | moderate | contig2621 | 343423 | A/G |
|
PHL-2 | c.3381T>A | p.His1127Gln | missense variant | moderate | contig2621 | 343424 | T/A |
|
PHL-2 | c.3467A>G | p.Gln1156Arg | missense variant | moderate | contig2621 | 343510 | A/G | |
PHL-2 | c.3552delG | p.Lys1185fs | frameshift variant | high | contig2621 | 343593 | CG/C |
|
PKSG-4b | c.558-1G>A | splice acceptor variant & intron variant | high | contig700 | 2715037 | C/T |
|
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
PKSG-4b | c.206T>C | p.Leu69Ser | missense variant | moderate | contig700 | 2724229 | A/G |
|
DXR-2 | c.431C>G | p.Ala144Gly | missense variant | moderate | contig380 | 287760 | G/C | |
OAC-2 | c.185C>T | p.Thr62Ile | missense variant | moderate | contig931 | 110054 | G/A |
|
OAC-2 | c.175G>A | p.Val59Ile | missense variant | moderate | contig931 | 110064 | C/T |
|
OAC-2 | c.22G>A | p.Val8Ile | missense variant | moderate | contig931 | 110317 | C/T |
|
ELF3 | c.305G>A | p.Arg102His | missense variant | moderate | contig97 | 242011 | G/A |
|
ELF3 | c.757C>T | p.Pro253Ser | missense variant | moderate | contig97 | 242463 | C/T | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 |
c.1803_1805d |
p.His601del | disruptive inframe deletion | moderate | contig97 | 244625 | ACAT/A |
|
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
OAC-1 | c.260C>G | p.Ser87Cys | missense variant | moderate | contig931 | 118104 | G/C |
|
AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
|
AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
|
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.241G>A | p.Val81Met | missense variant | moderate | contig700 | 1951397 | C/T |
|
PKSG-2b | c.240T>G | p.Asp80Glu | missense variant | moderate | contig700 | 1951398 | A/C |
|
PKSG-2b | c.230T>C | p.Val77Ala | missense variant | moderate | contig700 | 1951408 | A/G | |
DXR-1 | c.124G>A | p.Val42Ile | missense variant | moderate | contig380 | 235311 | C/T |
|
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 |
c.-108+1_-10 |
splice donor variant & intron variant | high | contig1891 | 889975 | A/AC |
|
|
PIE1-2 | c.6653A>G | p.Asn2218Ser | missense variant | moderate | contig1460 | 1184434 | T/C | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
EMF1-1 | c.242A>G | p.Lys81Arg | missense variant | moderate | contig883 | 269731 | A/G | |
FT | c.38A>T | p.Asn13Ile | missense variant | moderate | contig1561 | 3124462 | A/T |
|
FT | c.44G>A | p.Ser15Asn | missense variant | moderate | contig1561 | 3124468 | G/A |
|
FT | c.175C>G | p.Leu59Val | missense variant | moderate | contig1561 | 3124599 | C/G |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.517A>T | p.Ile173Leu | missense variant & splice region variant | moderate | contig121 | 2830795 | A/T |
|
aPT4 | c.634C>A | p.Pro212Thr | missense variant | moderate | contig121 | 2830912 | C/A |
|
aPT4 | c.757G>T | p.Val253Leu | missense variant | moderate | contig121 | 2831364 | G/T |
|
aPT4 | c.1156A>T | p.Met386Leu | missense variant | moderate | contig121 | 2833491 | A/T |
|
FLD |
c.2811_2813d |
p.Gly938dup | disruptive inframe insertion & splice region variant | moderate | contig1450 | 2044218 | T/TCCC |
|
FLD | c.2686G>A | p.Ala896Thr | missense variant | moderate | contig1450 | 2044848 | C/T | |
FLD | c.2681T>C | p.Ile894Thr | missense variant | moderate | contig1450 | 2044853 | A/G | |
FLD | c.125G>A | p.Ser42Asn | missense variant | moderate | contig1450 | 2047909 | C/T | |
AAE1-3 | c.416T>C | p.Leu139Pro | missense variant | moderate | contig976 | 1083609 | A/G |
|
AAE1-3 | c.403G>T | p.Asp135Tyr | missense variant | moderate | contig976 | 1083622 | C/A |
|
AAE1-3 | c.267T>G | p.His89Gln | missense variant | moderate | contig976 | 1083758 | A/C |
|
AAE1-3 | c.224C>T | p.Pro75Leu | missense variant | moderate | contig976 | 1083851 | G/A |
|
AAE1-3 | c.53G>T | p.Gly18Val | missense variant | moderate | contig976 | 1084022 | C/A |
|
AAE1-3 | c.12G>A | p.Met4Ile | missense variant | moderate | contig976 | 1084063 | C/T |
|
AAE1-3 | c.11T>C | p.Met4Thr | missense variant | moderate | contig976 | 1084064 | A/G |
|
GGR | c.317C>T | p.Pro106Leu | missense variant | moderate | contig2282 | 549309 | C/T | |
GGR |
c.358_359del |
p.Ala120fs | frameshift variant | high | contig2282 | 549348 | ACG/A |
|
GGR | c.376G>C | p.Glu126Gln | missense variant | moderate | contig2282 | 549368 | G/C | |
GGR | c.456T>A | p.His152Gln | missense variant | moderate | contig2282 | 549448 | T/A |
|
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
GGR | c.541G>A | p.Val181Ile | missense variant | moderate | contig2282 | 549533 | G/A |
|
GGR | c.581C>T | p.Ala194Val | missense variant | moderate | contig2282 | 549573 | C/T | |
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
Nearest genetic relatives (All Samples)
- 0.166 R1in136 (SRR14708227)
- 0.185 Juso14 (SRR14708259)
- 0.187 R1in136 (SRR14708237)
- 0.187 R1in136 (SRR14708226)
- 0.192 USO 31 (RSP10983)
- 0.201 Santhica27 (RSP10056)
- 0.203 USO 31 (RSP10981)
- 0.212 Lovrin (RSP10658)
- 0.212 Carmagnola USO 31 (RSP11204)
- 0.214 Fedora 17 (RSP10661)
- 0.217 Santhica 27 (RSP10665)
- 0.220 USO31 (RSP10233)
- 0.221 Santhica27 (RSP11047)
- 0.222 Fedora 17 (SRR14708222)
- 0.222 Ferimon 12 (SRR14708233)
- 0.222 VIR 37 - Novgorod-Seversky - cv (SRR14708234)
- 0.223 Futura 75 (RSP10664)
- 0.225 Tygra (RSP10667)
- 0.225 Monoica (RSP10241)
- 0.228 Beniko (SRR14708275)
Nearest genetic relatives (Base Tree)
- 0.195 Lovrin (RSP10658)
- 0.197 USO 31 (RSP10981)
- 0.202 Tygra (RSP10667)
- 0.215 Fedora 17 (RSP10661)
- 0.220 Santhica27 (RSP11047)
- 0.227 Monoica (RSP10241)
- 0.228 Futura 75 (RSP10664)
- 0.230 Ivory (RSP10668)
- 0.239 Tisza (RSP10659)
- 0.240 Carmagnola (RSP11037)
- 0.243 Carmagnola (RSP10979)
- 0.261 KYRG-11 (RSP11051)
- 0.263 Tisza (RSP11044)
- 0.267 Kyrgyz Gold (RSP11054)
- 0.279 Feral (RSP10890)
- 0.305 Jiangji (RSP10653)
- 0.334 Kimbo Slice (RSP10997)
- 0.335 Hermaphrodite ResearchSample2 (RSP11050)
- 0.341 RKM-2018-029 (RSP11121)
- 0.342 Liberty Haze (RSP11000)
Most genetically distant strains (All Samples)
- 0.451 Cherry Blossom (RSP11300)
- 0.449 Cherry Blossom (RSP11312)
- 0.446 Cherry Blossom (RSP11301)
- 0.441 Chem 91 (RSP11185)
- 0.441 Cherry Blossom (RSP11318)
- 0.440 Cherry Blossom (RSP11298)
- 0.433 QQD2 (RSP11450)
- 0.433 Cherry Blossom (RSP11311)
- 0.432 Unknown--Cherry Wine---001- (RSP11268)
- 0.431 GMO x Garlic Breath (RSP12507)
- 0.430 QLE1 (RSP11451)
- 0.429 Cherry Blossom (RSP11323)
- 0.428 New York City Deisel (RSP11225)
- 0.427 Cherry Blossom (RSP11319)
- 0.427 Chematonic -Cannatonic x Chemdawg- (RSP11394)
- 0.426 JL x NSPM1 4 (RSP11482)
- 0.426 Cherry Blossom (RSP11309)
- 0.425 AVIDEKEL 2 0 (RSP11174)
- 0.424 BagSeed (RSP12627)
- 0.422 JL Cross 10 (RSP11511)
Most genetically distant strains (Base Tree)
- 0.413 RKM-2018-002 (RSP11093)
- 0.411 Cbot-2019-005 (RSP11133)
- 0.401 RKM-2018-028 (RSP11120)
- 0.395 Kush Hemp E1 (RSP11128)
- 0.395 RKM-2018-032 (RSP11124)
- 0.389 JL yellow (RSP11075)
- 0.388 RKM-2018-022 (RSP11114)
- 0.383 Skunk#18 (RSP11038)
- 0.383 RKM-2018-009 (RSP11100)
- 0.382 RKM-2018-006 (RSP11097)
- 0.382 Hermaphrodite Research Sample1 (RSP11049)
- 0.380 RKM-2018-023 (RSP11115)
- 0.379 Cbot-2019-004 (RSP11132)
- 0.379 RKM-2018-018 (RSP11110)
- 0.379 Blue Dream (RSP11033)
- 0.378 Cbot-2019-001 (RSP11129)
- 0.378 Cherry (RSP11142)
- 0.377 RKM-2018-027 (RSP11119)
- 0.377 RKM-2018-026 (RSP11118)
- 0.375 RKM-2018-004 (RSP11096)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 14
- Concordance:
- 10
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 3
- Concordance:
- 3