R1in136
SRR 14708225
General Information
- Sample Name
- ERM4
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
CBDAS | c.8G>A | p.Cys3Tyr | missense variant | moderate | contig1772 | 2082234 | G/A |
|
CBDAS | c.221C>G | p.Thr74Ser | missense variant | moderate | contig1772 | 2082447 | C/G | |
CBDAS | c.503A>G | p.Asn168Ser | missense variant | moderate | contig1772 | 2082729 | A/G | |
CBDAS | c.587A>G | p.Asn196Ser | missense variant | moderate | contig1772 | 2082813 | A/G | |
CBDAS | c.1420A>C | p.Lys474Gln | missense variant | moderate | contig1772 | 2083646 | A/C | |
CBDAS | c.1628G>A | p.Arg543His | missense variant | moderate | contig1772 | 2083854 | G/A |
|
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
GPPs1 | c.896A>G | p.Asn299Ser | missense variant | moderate | contig676 | 169772 | A/G |
|
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
EMF1-2 | c.1187T>C | p.Leu396Ser | missense variant | moderate | contig885 | 2073 | T/C |
|
PHL-2 | c.722G>A | p.Gly241Glu | missense variant | moderate | contig2621 | 339860 | G/A |
|
PHL-2 | c.2467T>C | p.Ser823Pro | missense variant | moderate | contig2621 | 342510 | T/C |
|
PHL-2 | c.2564T>A | p.Phe855Tyr | missense variant | moderate | contig2621 | 342607 | T/A | |
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PHL-2 | c.2596G>A | p.Asp866Asn | missense variant | moderate | contig2621 | 342639 | G/A |
|
PHL-2 | c.2756A>C | p.Glu919Ala | missense variant | moderate | contig2621 | 342799 | A/C | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PHL-2 | c.3379C>G | p.His1127Asp | missense variant | moderate | contig2621 | 343422 | C/G |
|
PHL-2 | c.3380A>G | p.His1127Arg | missense variant | moderate | contig2621 | 343423 | A/G |
|
PHL-2 | c.3381T>A | p.His1127Gln | missense variant | moderate | contig2621 | 343424 | T/A |
|
PHL-2 | c.3467A>G | p.Gln1156Arg | missense variant | moderate | contig2621 | 343510 | A/G | |
PHL-2 | c.3552delG | p.Lys1185fs | frameshift variant | high | contig2621 | 343593 | CG/C |
|
PKSG-4b | c.558-1G>A | splice acceptor variant & intron variant | high | contig700 | 2715037 | C/T |
|
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
PKSG-4b | c.206T>C | p.Leu69Ser | missense variant | moderate | contig700 | 2724229 | A/G |
|
DXR-2 | c.431C>G | p.Ala144Gly | missense variant | moderate | contig380 | 287760 | G/C | |
OAC-2 | c.185C>T | p.Thr62Ile | missense variant | moderate | contig931 | 110054 | G/A |
|
OAC-2 | c.175G>A | p.Val59Ile | missense variant | moderate | contig931 | 110064 | C/T |
|
OAC-2 | c.22G>A | p.Val8Ile | missense variant | moderate | contig931 | 110317 | C/T |
|
ELF3 | c.305G>A | p.Arg102His | missense variant | moderate | contig97 | 242011 | G/A |
|
ELF3 | c.757C>T | p.Pro253Ser | missense variant | moderate | contig97 | 242463 | C/T | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 |
c.1803_1805d |
p.His601del | disruptive inframe deletion | moderate | contig97 | 244625 | ACAT/A |
|
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
OAC-1 | c.260C>G | p.Ser87Cys | missense variant | moderate | contig931 | 118104 | G/C |
|
AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
|
AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
|
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.241G>A | p.Val81Met | missense variant | moderate | contig700 | 1951397 | C/T |
|
PKSG-2b | c.240T>G | p.Asp80Glu | missense variant | moderate | contig700 | 1951398 | A/C |
|
PKSG-2b | c.230T>C | p.Val77Ala | missense variant | moderate | contig700 | 1951408 | A/G | |
DXR-1 | c.124G>A | p.Val42Ile | missense variant | moderate | contig380 | 235311 | C/T |
|
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 |
c.-108+1_-10 |
splice donor variant & intron variant | high | contig1891 | 889975 | A/AC |
|
|
PIE1-2 | c.6653A>G | p.Asn2218Ser | missense variant | moderate | contig1460 | 1184434 | T/C | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
EMF1-1 | c.242A>G | p.Lys81Arg | missense variant | moderate | contig883 | 269731 | A/G | |
FT | c.38A>T | p.Asn13Ile | missense variant | moderate | contig1561 | 3124462 | A/T |
|
FT | c.44G>A | p.Ser15Asn | missense variant | moderate | contig1561 | 3124468 | G/A |
|
FT | c.175C>G | p.Leu59Val | missense variant | moderate | contig1561 | 3124599 | C/G |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.517A>T | p.Ile173Leu | missense variant & splice region variant | moderate | contig121 | 2830795 | A/T |
|
aPT4 | c.634C>A | p.Pro212Thr | missense variant | moderate | contig121 | 2830912 | C/A |
|
aPT4 | c.757G>T | p.Val253Leu | missense variant | moderate | contig121 | 2831364 | G/T |
|
aPT4 | c.1156A>T | p.Met386Leu | missense variant | moderate | contig121 | 2833491 | A/T |
|
FLD |
c.2811_2813d |
p.Gly938dup | disruptive inframe insertion & splice region variant | moderate | contig1450 | 2044218 | T/TCCC |
|
FLD | c.2686G>A | p.Ala896Thr | missense variant | moderate | contig1450 | 2044848 | C/T | |
FLD | c.2681T>C | p.Ile894Thr | missense variant | moderate | contig1450 | 2044853 | A/G | |
FLD | c.125G>A | p.Ser42Asn | missense variant | moderate | contig1450 | 2047909 | C/T | |
AAE1-3 | c.416T>C | p.Leu139Pro | missense variant | moderate | contig976 | 1083609 | A/G |
|
AAE1-3 | c.403G>T | p.Asp135Tyr | missense variant | moderate | contig976 | 1083622 | C/A |
|
AAE1-3 | c.267T>G | p.His89Gln | missense variant | moderate | contig976 | 1083758 | A/C |
|
AAE1-3 | c.224C>T | p.Pro75Leu | missense variant | moderate | contig976 | 1083851 | G/A |
|
AAE1-3 | c.53G>T | p.Gly18Val | missense variant | moderate | contig976 | 1084022 | C/A |
|
AAE1-3 | c.12G>A | p.Met4Ile | missense variant | moderate | contig976 | 1084063 | C/T |
|
AAE1-3 | c.11T>C | p.Met4Thr | missense variant | moderate | contig976 | 1084064 | A/G |
|
GGR | c.317C>T | p.Pro106Leu | missense variant | moderate | contig2282 | 549309 | C/T | |
GGR |
c.358_359del |
p.Ala120fs | frameshift variant | high | contig2282 | 549348 | ACG/A |
|
GGR | c.376G>C | p.Glu126Gln | missense variant | moderate | contig2282 | 549368 | G/C | |
GGR | c.456T>A | p.His152Gln | missense variant | moderate | contig2282 | 549448 | T/A |
|
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
GGR | c.541G>A | p.Val181Ile | missense variant | moderate | contig2282 | 549533 | G/A |
|
GGR | c.581C>T | p.Ala194Val | missense variant | moderate | contig2282 | 549573 | C/T | |
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
Nearest genetic relatives (All Samples)
- 0.168 USO 31 (RSP10981)
- 0.173 Futura 75 (RSP10664)
- 0.176 Fedora 17 (SRR14708222)
- 0.187 Juso14 (SRR14708259)
- 0.190 R1in136 (SRR14708227)
- 0.191 R1in136 (SRR14708237)
- 0.196 R2in135 (SRR14708236)
- 0.201 USO 31 (RSP10983)
- 0.203 B52 (SRR14708255)
- 0.204 Carmagnola USO 31 (RSP11204)
- 0.207 VIR 469 (SRR14708243)
- 0.208 AOAC MI 542 (RSP11755)
- 0.209 AOAC MI 567 (RSP11758)
- 0.211 XUM2 (SRR14708204)
- 0.211 AOAC MI 545 (RSP11756)
- 0.212 VIR 449, Szegedi 9 (SRR14708213)
- 0.213 R1in136 (SRR14708226)
- 0.213 AOAC MI 597 (RSP11761)
- 0.214 AOAC MI 501 (RSP11748)
- 0.215 Santhica27 (RSP11047)
Nearest genetic relatives (Base Tree)
- 0.194 USO 31 (RSP10981)
- 0.202 Futura 75 (RSP10664)
- 0.237 Liberty Haze (RSP11000)
- 0.244 Santhica27 (RSP11047)
- 0.250 Lovrin (RSP10658)
- 0.250 Tygra (RSP10667)
- 0.268 Carmagnola (RSP11037)
- 0.269 Tisza (RSP11044)
- 0.283 Tisza (RSP10659)
- 0.284 UP Sunrise (RSP10989)
- 0.293 Kyrgyz Gold (RSP11054)
- 0.297 RKM-2018-031 (RSP11123)
- 0.305 Monoica (RSP10241)
- 0.309 Carmagnola (RSP10979)
- 0.310 Fedora 17 (RSP10661)
- 0.311 Blueberry Cheesecake (RSP10684)
- 0.312 Ivory (RSP10668)
- 0.314 RKM-2018-018 (RSP11110)
- 0.322 RKM-2018-020 (RSP11112)
- 0.322 Recon (RSP10755)
Most genetically distant strains (All Samples)
- 0.475 JL yellow (RSP11075)
- 0.471 JL 3rd Gen Mother (RSP11197)
- 0.446 80E (RSP11213)
- 0.440 JL 3rd Gen Mother (RSP11214)
- 0.429 Danny Noonan (RSP11070)
- 0.425 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.412 80E (RSP11212)
- 0.404 RKM-2018-002 (RSP11093)
- 0.404 Unknown- Cherry Wine - 001 (RSP11268)
- 0.403 JL 4th Gen 5 (RSP11199)
- 0.402 Cbot-2019-005 (RSP11133)
- 0.398 Grape Stomper (RSP11180)
- 0.398 JL 2 (RSP11076)
- 0.397 Cherry Blossom (RSP11274)
- 0.396 JL 4th Gen 3 (RSP11195)
- 0.394 80E (RSP11211)
- 0.390 Star Dawg (RSP11352)
- 0.390 Cbot-2019-004 (RSP11132)
- 0.390 RKM-2018-032 (RSP11124)
- 0.389 RKM-2018-017 (RSP11109)
Most genetically distant strains (Base Tree)
- 0.492 JL yellow (RSP11075)
- 0.411 Cbot-2019-005 (RSP11133)
- 0.401 Sour Raspberry (RSP10551)
- 0.394 Cbot-2019-004 (RSP11132)
- 0.389 RKM-2018-002 (RSP11093)
- 0.385 Cbot-2019-006 (RSP11134)
- 0.381 Skunk 18 (RSP11038)
- 0.375 RKM-2018-006 (RSP11097)
- 0.374 RKM-2018-027 (RSP11119)
- 0.370 Cbot-2019-001 (RSP11129)
- 0.370 RKM-2018-003 (RSP11094)
- 0.368 RKM-2018-022 (RSP11114)
- 0.365 Blueberry Cheesecake (RSP10672)
- 0.364 Blueberry Cheesecake (RSP10680)
- 0.364 RKM-2018-032 (RSP11124)
- 0.362 Hermaphrodite ResearchSample2 (RSP11050)
- 0.361 RKM-2018-034 (RSP11126)
- 0.360 Durban Poison (RSP11014)
- 0.359 Kush Hemp E1 (RSP11128)
- 0.358 Blue Dream (RSP11033)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 14
- Concordance:
- 10
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 3
- Concordance:
- 3