R1in136
SRR 14708226
General Information
- Sample Name
- ERM3
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Unknown
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
CBDAS | c.8G>A | p.Cys3Tyr | missense variant | moderate | contig1772 | 2082234 | G/A |
|
CBDAS | c.503A>G | p.Asn168Ser | missense variant | moderate | contig1772 | 2082729 | A/G | |
CBDAS | c.587A>G | p.Asn196Ser | missense variant | moderate | contig1772 | 2082813 | A/G | |
CBDAS | c.1420A>C | p.Lys474Gln | missense variant | moderate | contig1772 | 2083646 | A/C |
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
GPPs1 | c.896A>G | p.Asn299Ser | missense variant | moderate | contig676 | 169772 | A/G |
|
EMF1-2 | c.1187T>C | p.Leu396Ser | missense variant | moderate | contig885 | 2073 | T/C |
|
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.2564T>A | p.Phe855Tyr | missense variant | moderate | contig2621 | 342607 | T/A | |
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PHL-2 | c.2756A>C | p.Glu919Ala | missense variant | moderate | contig2621 | 342799 | A/C | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.2830A>G | p.Asn944Asp | missense variant | moderate | contig2621 | 342873 | A/G |
|
PHL-2 | c.3002A>G | p.Tyr1001Cys | missense variant | moderate | contig2621 | 343045 | A/G | |
PHL-2 | c.3467A>G | p.Gln1156Arg | missense variant | moderate | contig2621 | 343510 | A/G | |
PKSG-4a |
c.261_264dup |
p.Met89fs | frameshift variant | high | contig700 | 1937671 | A/AGTAC |
|
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
OAC-2 | c.185C>T | p.Thr62Ile | missense variant | moderate | contig931 | 110054 | G/A |
|
OAC-2 | c.22G>A | p.Val8Ile | missense variant | moderate | contig931 | 110317 | C/T |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 | c.1435G>C | p.Ala479Pro | missense variant | moderate | contig97 | 244266 | G/C |
|
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
HDS-2 | c.679G>C | p.Gly227Arg | missense variant | moderate | contig95 | 1990632 | G/C |
|
AAE1-2 | c.1434G>T | p.Glu478Asp | missense variant | moderate | contig81 | 210396 | G/T |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
Edestin |
c.271_272ins |
p.Leu90_Arg9 |
conservative inframe insertion | moderate | contig850 | 3065018 | C/CTGA |
|
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 |
c.-108+1_-10 |
splice donor variant & intron variant | high | contig1891 | 889975 | A/AC |
|
|
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.517A>T | p.Ile173Leu | missense variant & splice region variant | moderate | contig121 | 2830795 | A/T |
|
FLD |
c.2811_2813d |
p.Gly938dup | disruptive inframe insertion & splice region variant | moderate | contig1450 | 2044218 | T/TCCC |
|
FLD | c.125G>A | p.Ser42Asn | missense variant | moderate | contig1450 | 2047909 | C/T | |
AAE1-3 | c.382T>C | p.Tyr128His | missense variant | moderate | contig976 | 1083643 | A/G |
|
GGR | c.456T>A | p.His152Gln | missense variant | moderate | contig2282 | 549448 | T/A |
|
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
Nearest genetic relatives (All Samples)
- 0.172 USO31 (RSP10233)
- 0.198 KYRG-11 (RSP11051)
- 0.204 R1in136 (SRR14708227)
- 0.210 USO 31 (RSP10981)
- 0.211 USO 31 (RSP10983)
- 0.213 R1in136 (SRR14708225)
- 0.216 Juso14 (SRR14708259)
- 0.224 Futura 75 (RSP10664)
- 0.229 Kompolti (SRR14708277)
- 0.233 VIR 483 (SRR14708239)
- 0.235 XUM2 (SRR14708204)
- 0.235 Santhica 27 (SRR14708211)
- 0.238 R1in136 (SRR14708237)
- 0.240 VIR 223, Bernburgskaya Odnodomnaya, bm (SRR14708217)
- 0.240 Bialobrzeskie (SRR14708244)
- 0.246 XUM1 (SRR14708205)
- 0.252 VIR 507, Krasnodarsky 10 FB (SRR14708229)
- 0.254 KYRG-151 (RSP11052)
- 0.254 VIR 483 (SRR14708240)
- 0.257 VIR 369 (SRR14708231)
Nearest genetic relatives (Base Tree)
- 0.228 Futura 75 (RSP10664)
- 0.231 USO 31 (RSP10981)
- 0.232 KYRG-11 (RSP11051)
- 0.264 UP Sunrise (RSP10989)
- 0.270 Santhica27 (RSP11047)
- 0.277 Lovrin (RSP10658)
- 0.286 Fedora 17 (RSP10661)
- 0.286 Blueberry Cheesecake (RSP10684)
- 0.288 Tisza (RSP10659)
- 0.292 Liberty Haze (RSP11000)
- 0.298 Monoica (RSP10241)
- 0.307 Tygra (RSP10667)
- 0.310 Tisza (RSP11044)
- 0.312 Hermaphrodite Research Sample1 (RSP11049)
- 0.317 Ivory (RSP10668)
- 0.322 RKM-2018-028 (RSP11120)
- 0.324 The Gift (RSP10988)
- 0.324 RKM-2018-018 (RSP11110)
- 0.327 Skunk 18 (RSP11038)
- 0.333 Hermaphrodite ResearchSample2 (RSP11050)
Most genetically distant strains (All Samples)
- 0.481 JL 4th Gen 6 (RSP11200)
- 0.479 JL 3rd Gen Mother (RSP11197)
- 0.470 JL yellow (RSP11075)
- 0.463 Cherry Blossom (RSP11312)
- 0.463 UP Sunset (RSP11256)
- 0.463 JL 4th Gen 3 (RSP11195)
- 0.458 Cherry Blossom (RSP11274)
- 0.456 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.449 Northern Lights (RSP11501)
- 0.444 JL 4th Gen 5 (RSP11199)
- 0.441 Chem 91 (RSP11185)
- 0.436 Candy Kush (RSP11492)
- 0.436 Cherry Blossom (RSP11298)
- 0.434 Grape Stomper (RSP11180)
- 0.434 JL 3rd Gen Mother (RSP11214)
- 0.434 Wife (RSP11148)
- 0.433 Cbot-2019-004 (RSP11132)
- 0.433 Danny Noonan (RSP11070)
- 0.430 Cbot-2019-003 (RSP11131)
- 0.428 Unknown- Cherry Wine - 003 (RSP11270)
Most genetically distant strains (Base Tree)
- 0.470 JL yellow (RSP11075)
- 0.425 Cbot-2019-004 (RSP11132)
- 0.420 CST (RSP11002)
- 0.412 Blueberry Cheesecake (RSP10672)
- 0.412 RKM-2018-019 (RSP11111)
- 0.408 Cbot-2019-005 (RSP11133)
- 0.408 RKM-2018-006 (RSP11097)
- 0.405 RKM-2018-009 (RSP11100)
- 0.402 RKM-2018-022 (RSP11114)
- 0.396 Sour Raspberry (RSP10551)
- 0.392 Cbot-2019-001 (RSP11129)
- 0.391 Kush Hemp E1 (RSP11128)
- 0.390 Durban Poison (RSP11014)
- 0.388 RKM-2018-020 (RSP11112)
- 0.387 RKM-2018-003 (RSP11094)
- 0.385 RKM-2018-005 (RSP11096)
- 0.385 RKM-2018-002 (RSP11093)
- 0.384 RKM-2018-023 (RSP11115)
- 0.383 Blueberry Cheesecake (RSP10680)
- 0.383 RKM-2018-033 (RSP11125)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 10
- Concordance:
- 9
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 3
- Concordance:
- 2