R1in136
SRR 14708227
General Information
- Sample Name
- ERM2
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Unknown
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
CBDAS | c.8G>A | p.Cys3Tyr | missense variant | moderate | contig1772 | 2082234 | G/A |
|
CBDAS | c.221C>G | p.Thr74Ser | missense variant | moderate | contig1772 | 2082447 | C/G | |
CBDAS | c.503A>G | p.Asn168Ser | missense variant | moderate | contig1772 | 2082729 | A/G | |
CBDAS | c.1420A>C | p.Lys474Gln | missense variant | moderate | contig1772 | 2083646 | A/C | |
CBDAS | c.1628G>A | p.Arg543His | missense variant | moderate | contig1772 | 2083854 | G/A |
|
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
GPPs1 | c.896A>G | p.Asn299Ser | missense variant | moderate | contig676 | 169772 | A/G |
|
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
EMF1-2 | c.1187T>C | p.Leu396Ser | missense variant | moderate | contig885 | 2073 | T/C |
|
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.2830A>G | p.Asn944Asp | missense variant | moderate | contig2621 | 342873 | A/G |
|
PKSG-4b | c.558-1G>A | splice acceptor variant & intron variant | high | contig700 | 2715037 | C/T |
|
|
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
PKSG-4a |
c.261_264dup |
p.Met89fs | frameshift variant | high | contig700 | 1937671 | A/AGTAC |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
OAC-2 | c.22G>A | p.Val8Ile | missense variant | moderate | contig931 | 110317 | C/T |
|
ELF3 | c.1366T>G | p.Leu456Val | missense variant | moderate | contig97 | 244197 | T/G |
|
ELF3 | c.1435G>C | p.Ala479Pro | missense variant | moderate | contig97 | 244266 | G/C |
|
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
aPT1 |
c.95_97delGT |
p.Cys32del | disruptive inframe deletion | moderate | contig121 | 2835800 | ATGT/A | |
AAE1-2 | c.1102C>A | p.His368Asn | missense variant | moderate | contig81 | 210064 | C/A |
|
AAE1-2 | c.1115A>G | p.Glu372Gly | missense variant | moderate | contig81 | 210077 | A/G |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
Edestin |
c.271_272ins |
p.Leu90_Arg9 |
conservative inframe insertion | moderate | contig850 | 3065018 | C/CTGA |
|
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.613G>A | p.Asp205Asn | missense variant | moderate | contig1891 | 888040 | C/T |
|
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
PIE1-2 | c.1630G>C | p.Ala544Pro | missense variant | moderate | contig1460 | 1191600 | C/G | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
EMF1-1 | c.242A>G | p.Lys81Arg | missense variant | moderate | contig883 | 269731 | A/G | |
FT | c.175C>G | p.Leu59Val | missense variant | moderate | contig1561 | 3124599 | C/G |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 | c.198A>C | p.Lys66Asn | missense variant | moderate | contig121 | 2828854 | A/C |
|
FLD |
c.2811_2813d |
p.Gly938dup | disruptive inframe insertion & splice region variant | moderate | contig1450 | 2044218 | T/TCCC |
|
FLD | c.2686G>A | p.Ala896Thr | missense variant | moderate | contig1450 | 2044848 | C/T | |
FLD | c.2681T>C | p.Ile894Thr | missense variant | moderate | contig1450 | 2044853 | A/G | |
AAE1-3 | c.655C>T | p.Pro219Ser | missense variant | moderate | contig976 | 1083199 | G/A |
|
AAE1-3 | c.635G>A | p.Gly212Asp | missense variant | moderate | contig976 | 1083219 | C/T |
|
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
AAE1-3 | c.416T>C | p.Leu139Pro | missense variant | moderate | contig976 | 1083609 | A/G |
|
AAE1-3 | c.267T>G | p.His89Gln | missense variant | moderate | contig976 | 1083758 | A/C |
|
FAD7A-1 | c.691G>A | p.Gly231Ser | missense variant | moderate | contig510 | 69995 | G/A |
|
GGR | c.376G>C | p.Glu126Gln | missense variant | moderate | contig2282 | 549368 | G/C | |
GGR | c.382C>T | p.Leu128Phe | missense variant | moderate | contig2282 | 549374 | C/T |
|
PKSB-3 | c.509T>C | p.Val170Ala | missense variant & splice region variant | moderate | contig93 | 3336743 | T/C |
|
PKSB-3 | c.1848G>A | p.Met616Ile | missense variant | moderate | contig93 | 3339955 | G/A |
|
Nearest genetic relatives (All Samples)
- 0.172 R1in136 (SRR14708237)
- 0.174 Juso14 (SRR14708259)
- 0.177 Tygra (RSP10667)
- 0.190 R1in136 (SRR14708225)
- 0.204 R1in136 (SRR14708226)
- 0.214 Kompolti (SRR14708277)
- 0.222 Serious Happiness (RSP10763)
- 0.223 VIR 469 (SRR14708242)
- 0.225 USO 31 (RSP10981)
- 0.226 Fedora 17 (SRR14708222)
- 0.228 Santhica27 (RSP11047)
- 0.230 Santhica 27 (SRR14708211)
- 0.230 Futura 75 (RSP10664)
- 0.230 Suver Haze (RSP11364)
- 0.231 Uniko B (SRR14708278)
- 0.235 USO31 (RSP10233)
- 0.235 Miss X (RSP10999)
- 0.238 KYRG-151 (RSP11052)
- 0.240 Santhica 27 (RSP10665)
- 0.240 Santhica27 (RSP11046)
Nearest genetic relatives (Base Tree)
- 0.177 Tygra (RSP10667)
- 0.226 UP Sunrise (RSP10989)
- 0.229 USO 31 (RSP10981)
- 0.233 Santhica27 (RSP11047)
- 0.236 Lovrin (RSP10658)
- 0.248 Futura 75 (RSP10664)
- 0.265 Ivory (RSP10668)
- 0.265 Monoica (RSP10241)
- 0.295 RKM-2018-034 (RSP11126)
- 0.298 Tisza (RSP10659)
- 0.298 Fedora 17 (RSP10661)
- 0.300 Gold Cracker (RSP11048)
- 0.301 Skywalker OG (RSP10837)
- 0.302 Tisza (RSP11044)
- 0.303 RKM-2018-018 (RSP11110)
- 0.304 Liberty Haze (RSP11000)
- 0.313 RKM-2018-029 (RSP11121)
- 0.314 KYRG-11 (RSP11051)
- 0.315 Carmagnola (RSP11037)
- 0.321 Kyrgyz Gold (RSP11054)
Most genetically distant strains (All Samples)
- 0.453 JL 4th Gen 4 (RSP11198)
- 0.450 JL 3rd Gen Mother (RSP11197)
- 0.430 JL yellow (RSP11075)
- 0.428 JL 2 (RSP11076)
- 0.421 CST (RSP11002)
- 0.421 Northern Lights (RSP11501)
- 0.420 JL 4th Gen 6 (RSP11200)
- 0.419 White Label 1 (RSP11336)
- 0.416 Sour Tsunami (RSP11187)
- 0.412 80E (RSP11213)
- 0.411 80E (RSP11211)
- 0.411 Master Kush (RSP11182)
- 0.410 JL 3rd Gen Father (RSP11196)
- 0.409 80E (RSP11212)
- 0.406 JL 4th Gen 5 (RSP11199)
- 0.404 JL 3rd Gen Mother (RSP11214)
- 0.403 Danny Noonan (RSP11070)
- 0.402 Tanao Sri 46 (RSP11486)
- 0.400 Big Bud (SRR14708270)
- 0.398 Durban Poison (RSP11014)
Most genetically distant strains (Base Tree)
- 0.426 JL yellow (RSP11075)
- 0.422 RKM-2018-027 (RSP11119)
- 0.408 QUEEN JESUS (RSP10105)
- 0.402 RKM-2018-006 (RSP11097)
- 0.397 CST (RSP11002)
- 0.397 RKM-2018-002 (RSP11093)
- 0.390 Cbot-2019-005 (RSP11133)
- 0.384 RKM-2018-023 (RSP11115)
- 0.382 Cbot-2019-004 (RSP11132)
- 0.378 Durban Poison (RSP11014)
- 0.375 RKM-2018-031 (RSP11123)
- 0.375 Blueberry Cheesecake (RSP10672)
- 0.374 Cherry (RSP11142)
- 0.372 RKM-2018-022 (RSP11114)
- 0.369 RKM-2018-033 (RSP11125)
- 0.368 RKM-2018-003 (RSP11094)
- 0.364 Blueberry Cheesecake (RSP10680)
- 0.364 Cherry (RSP11143)
- 0.361 Cbot-2019-006 (RSP11134)
- 0.360 Pie Hoe (RSP11073)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 5
- Concordance:
- 4
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 3
- Concordance:
- 2