IBE
SRR 14708228
General Information
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
GPPs1 | c.744C>G | p.Asp248Glu | missense variant | moderate | contig676 | 168993 | C/G |
|
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
GPPs1 | c.896A>G | p.Asn299Ser | missense variant | moderate | contig676 | 169772 | A/G |
|
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
PHL-2 | c.932T>C | p.Leu311Pro | missense variant | moderate | contig2621 | 340210 | T/C | |
PHL-2 | c.1096G>A | p.Ala366Thr | missense variant | moderate | contig2621 | 340374 | G/A | |
PHL-2 | c.1364A>G | p.Asp455Gly | missense variant | moderate | contig2621 | 340642 | A/G |
|
PHL-2 | c.1381T>G | p.Phe461Val | missense variant | moderate | contig2621 | 340659 | T/G |
|
PHL-2 | c.1438C>G | p.Leu480Val | missense variant | moderate | contig2621 | 340716 | C/G |
|
PHL-2 | c.1493G>A | p.Gly498Asp | missense variant | moderate | contig2621 | 340771 | G/A |
|
PHL-2 | c.2582C>G | p.Pro861Arg | missense variant | moderate | contig2621 | 342625 | C/G |
|
PHL-2 | c.2834A>G | p.Asn945Ser | missense variant | moderate | contig2621 | 342877 | A/G |
|
PHL-2 | c.3020T>A | p.Ile1007Asn | missense variant | moderate | contig2621 | 343063 | T/A |
|
PHL-2 | c.3373A>G | p.Thr1125Ala | missense variant | moderate | contig2621 | 343416 | A/G | |
PHL-2 |
c.3556_3557d |
p.Lys1186fs | frameshift variant | high | contig2621 | 343598 | GAA/G | |
PKSG-4b | c.554A>G | p.Tyr185Cys | missense variant | moderate | contig700 | 2721119 | T/C |
|
PKSG-4b |
c.535_545del |
p.Ile179fs | frameshift variant | high | contig700 | 2721127 |
CCCCACTCCAAT |
|
PKSG-4b | c.523C>T | p.His175Tyr | missense variant | moderate | contig700 | 2721150 | G/A | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
PKSG-4b | c.238T>C | p.Phe80Leu | missense variant | moderate | contig700 | 2724197 | A/G |
|
PKSG-4b | c.229G>A | p.Gly77Ser | missense variant | moderate | contig700 | 2724206 | C/T |
|
PKSG-4b | c.216G>C | p.Leu72Phe | missense variant | moderate | contig700 | 2724219 | C/G |
|
PKSG-4b | c.206T>C | p.Leu69Ser | missense variant | moderate | contig700 | 2724229 | A/G |
|
PKSG-4b | c.143G>A | p.Arg48Gln | missense variant | moderate | contig700 | 2724292 | C/T |
|
PKSG-4a | c.493G>A | p.Gly165Ser | missense variant | moderate | contig700 | 1937904 | G/A |
|
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 | c.574A>G | p.Asn192Asp | missense variant | moderate | contig97 | 242280 | A/G | |
ELF3 | c.630G>T | p.Lys210Asn | missense variant | moderate | contig97 | 242336 | G/T |
|
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 | c.1366T>G | p.Leu456Val | missense variant | moderate | contig97 | 244197 | T/G |
|
ELF3 | c.1385C>T | p.Ala462Val | missense variant | moderate | contig97 | 244216 | C/T |
|
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 | c.1794A>T | p.Gln598His | missense variant | moderate | contig97 | 244625 | A/T |
|
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 |
c.2142_2144d |
p.Pro715del | disruptive inframe deletion | moderate | contig97 | 244965 | GCTC/G |
|
ELF3 | c.2198delG | p.Arg733fs | frameshift variant | high | contig97 | 245028 | CG/C | |
ELF3 |
c.2200_2204d |
p.His734fs | frameshift variant | high | contig97 | 245030 | TCATCA/T |
|
ELF5 | c.853C>T | p.Pro285Ser | missense variant | moderate | contig382 | 880715 | C/T | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
HDS-2 | c.151G>T | p.Ala51Ser | missense variant | moderate | contig95 | 1989818 | G/T |
|
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 | c.374A>G | p.His125Arg | missense variant | moderate | contig81 | 209336 | A/G |
|
AAE1-2 | c.1102C>A | p.His368Asn | missense variant | moderate | contig81 | 210064 | C/A |
|
AAE1-2 | c.1115A>G | p.Glu372Gly | missense variant | moderate | contig81 | 210077 | A/G |
|
AAE1-2 | c.1406A>C | p.Asn469Thr | missense variant | moderate | contig81 | 210368 | A/C |
|
AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
|
AAE1-2 | c.1434G>T | p.Glu478Asp | missense variant | moderate | contig81 | 210396 | G/T |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
PHL-1 | c.407G>A | p.Arg136Gln | missense variant | moderate | contig1439 | 1491441 | C/T | |
PHL-1 | c.176G>A | p.Gly59Glu | missense variant | moderate | contig1439 | 1492817 | C/T |
|
PHL-1 | c.175G>A | p.Gly59Arg | missense variant | moderate | contig1439 | 1492818 | C/T | |
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
TFL1 | c.304G>A | p.Asp102Asn | missense variant & splice region variant | moderate | contig1636 | 520613 | C/T |
|
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 | c.35G>A | p.Cys12Tyr | missense variant | moderate | contig1891 | 889357 | C/T | |
HDS-1 |
c.-108+1_-10 |
splice donor variant & intron variant | high | contig1891 | 889975 | A/AC |
|
|
PIE1-2 | c.6653A>G | p.Asn2218Ser | missense variant | moderate | contig1460 | 1184434 | T/C | |
PIE1-2 | c.5932A>G | p.Ile1978Val | missense variant | moderate | contig1460 | 1185552 | T/C | |
PIE1-2 | c.1872T>A | p.Asp624Glu | missense variant | moderate | contig1460 | 1190252 | A/T | |
PIE1-2 | c.1450G>C | p.Asp484His | missense variant | moderate | contig1460 | 1191948 | C/G |
|
PIE1-2 | c.1289A>G | p.Asp430Gly | missense variant | moderate | contig1460 | 1192109 | T/C |
|
PIE1-2 | c.710C>T | p.Pro237Leu | missense variant | moderate | contig1460 | 1193804 | G/A | |
PIE1-2 | c.637T>A | p.Ser213Thr | missense variant | moderate | contig1460 | 1194421 | A/T | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
FT |
c.421_422dup |
p.Leu142fs | frameshift variant | high | contig1561 | 3126659 | C/CTA |
|
FT | c.424C>A | p.Leu142Ile | missense variant | moderate | contig1561 | 3126663 | C/A |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 | c.198A>C | p.Lys66Asn | missense variant | moderate | contig121 | 2828854 | A/C |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
FLD | c.2836A>T | p.Arg946* | stop gained | high | contig1450 | 2044196 | T/A |
|
FLD | c.2686G>A | p.Ala896Thr | missense variant | moderate | contig1450 | 2044848 | C/T | |
FLD | c.2681T>C | p.Ile894Thr | missense variant | moderate | contig1450 | 2044853 | A/G | |
FLD | c.2549C>T | p.Thr850Ile | missense variant & splice region variant | moderate | contig1450 | 2045191 | G/A |
|
FLD | c.125G>A | p.Ser42Asn | missense variant | moderate | contig1450 | 2047909 | C/T | |
AAE1-3 | c.199A>G | p.Asn67Asp | missense variant | moderate | contig976 | 1083876 | T/C |
|
AAE1-3 | c.188A>G | p.Asn63Ser | missense variant | moderate | contig976 | 1083887 | T/C |
|
PIE1-1 | c.1222C>G | p.Gln408Glu | missense variant | moderate | contig1225 | 2281482 | C/G | |
GGR | c.376G>C | p.Glu126Gln | missense variant | moderate | contig2282 | 549368 | G/C | |
GGR | c.382C>T | p.Leu128Phe | missense variant | moderate | contig2282 | 549374 | C/T |
|
GGR | c.456T>A | p.His152Gln | missense variant | moderate | contig2282 | 549448 | T/A |
|
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
GGR | c.581C>T | p.Ala194Val | missense variant | moderate | contig2282 | 549573 | C/T | |
GGR | c.675A>T | p.Glu225Asp | missense variant | moderate | contig2282 | 549667 | A/T |
|
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
PKSB-3 | c.1652A>G | p.Glu551Gly | missense variant | moderate | contig93 | 3339759 | A/G |
|
Nearest genetic relatives (All Samples)
- 0.189 IBR3 (SRR14708249)
- 0.193 IBR2 (SRR14708250)
- 0.196 IBR1 (SRR14708251)
- 0.220 IUP2 (SRR14708257)
- 0.222 IUP1 (SRR14708258)
- 0.234 IUP3 (SRR14708256)
- 0.242 PID2 (SRR14708247)
- 0.250 PID1 (SRR14708248)
- 0.261 IUL2 (SRR14708253)
- 0.262 IUL1 (SRR14708254)
- 0.263 Tisza (RSP10659)
- 0.264 Tak-HN (RSP11618)
- 0.264 PCL1 (SRR14708246)
- 0.265 KYRG-151 (RSP11052)
- 0.266 IUL3 (SRR14708252)
- 0.268 SCN (SRR14708201)
- 0.269 R4 (RSP11617)
- 0.271 KYRG-11 (RSP11051)
- 0.272 PCL2 (SRR14708245)
- 0.273 Tiger Tail -78- (RSP11619)
Nearest genetic relatives (Base Tree)
- 0.270 Tisza (RSP11044)
- 0.271 KYRG-11 (RSP11051)
- 0.273 Kyrgyz Gold (RSP11054)
- 0.277 Tisza (RSP10659)
- 0.281 Tygra (RSP10667)
- 0.282 Jiangji (RSP10653)
- 0.284 Lovrin (RSP10658)
- 0.286 Santhica27 (RSP11047)
- 0.289 Futura 75 (RSP10664)
- 0.294 Ivory (RSP10668)
- 0.298 USO 31 (RSP10981)
- 0.298 Carmagnola (RSP11037)
- 0.304 Monoica (RSP10241)
- 0.309 Carmagnola (RSP10979)
- 0.310 Recon (RSP10755)
- 0.311 Fedora 17 (RSP10661)
- 0.315 Feral (RSP10890)
- 0.316 RKM-2018-029 (RSP11121)
- 0.321 Hermaphrodite ResearchSample2 (RSP11050)
- 0.331 Kimbo Slice (RSP10997)
Most genetically distant strains (All Samples)
- 0.467 Cherry Blossom (RSP11318)
- 0.458 Cherry Blossom (RSP11323)
- 0.444 Cherry Blossom (RSP11328)
- 0.440 Cherry Blossom (RSP11301)
- 0.438 Chem 91 (RSP11185)
- 0.434 Unknown--Cherry Wine---001- (RSP11268)
- 0.432 Motor Breath #15 (RSP12093)
- 0.430 CHEM4 (RSP12090)
- 0.430 Cherry Blossom (RSP11321)
- 0.428 JL x NSPM1 4 (RSP11482)
- 0.427 Cherry Blossom (RSP11300)
- 0.426 New York City Deisel (RSP11225)
- 0.424 RKM-2018-002 (RSP11093)
- 0.424 Cherry Blossom (RSP11302)
- 0.423 GG4 (RSP11978)
- 0.422 Cherry Blossom (RSP11334)
- 0.421 Cherry Blossom (RSP11331)
- 0.420 QLE1 (RSP11451)
- 0.419 JL Cross 11 (RSP11512)
- 0.418 Super Sour Diesel (RSP11191)
Most genetically distant strains (Base Tree)
- 0.418 RKM-2018-002 (RSP11093)
- 0.404 RKM-2018-028 (RSP11120)
- 0.394 RKM-2018-032 (RSP11124)
- 0.393 JL yellow (RSP11075)
- 0.386 RKM-2018-004 (RSP11096)
- 0.384 Hermaphrodite Research Sample1 (RSP11049)
- 0.384 RKM-2018-006 (RSP11097)
- 0.383 RKM-2018-018 (RSP11110)
- 0.383 Skywalker OG (RSP10837)
- 0.382 RKM-2018-009 (RSP11100)
- 0.381 Skunk#18 (RSP11038)
- 0.378 RKM-2018-026 (RSP11118)
- 0.376 RKM-2018-033 (RSP11125)
- 0.372 RKM-2018-022 (RSP11114)
- 0.372 Cbot-2019-001 (RSP11129)
- 0.372 RKM-2018-023 (RSP11115)
- 0.371 Cbot-2019-005 (RSP11133)
- 0.368 Italian Kiss (RSP11034)
- 0.364 Gold Cracker (RSP11048)
- 0.362 Kush Hemp E1 (RSP11128)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 19
- Concordance:
- 15
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 4
- Concordance:
- 4