VIR 507 - Krasnodarsky 10 FB
SRR 14708229
General Information
- Sample Name
- RKY
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Unknown
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
CBDAS | c.221C>G | p.Thr74Ser | missense variant | moderate | contig1772 | 2082447 | C/G | |
CBDAS | c.503A>G | p.Asn168Ser | missense variant | moderate | contig1772 | 2082729 | A/G | |
CBDAS | c.587A>G | p.Asn196Ser | missense variant | moderate | contig1772 | 2082813 | A/G | |
CBDAS | c.1420A>C | p.Lys474Gln | missense variant | moderate | contig1772 | 2083646 | A/C | |
CBDAS | c.1628G>A | p.Arg543His | missense variant | moderate | contig1772 | 2083854 | G/A |
|
Variants (Select Genes of Interest)
GPPs1 | c.744C>G | p.Asp248Glu | missense variant | moderate | contig676 | 168993 | C/G |
|
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
PHL-2 | c.1057A>G | p.Arg353Gly | missense variant | moderate | contig2621 | 340335 | A/G | |
PHL-2 | c.3467A>G | p.Gln1156Arg | missense variant | moderate | contig2621 | 343510 | A/G | |
PKSG-4b | c.558-1G>A | splice acceptor variant & intron variant | high | contig700 | 2715037 | C/T |
|
|
PKSG-4b |
c.353_354ins |
p.Gly119fs | frameshift variant | high | contig700 | 2721319 | T/TGG |
|
PKSG-4b | c.324A>C | p.Glu108Asp | missense variant | moderate | contig700 | 2721349 | T/G |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
DXR-2 | c.431C>G | p.Ala144Gly | missense variant | moderate | contig380 | 287760 | G/C | |
ELF4 | c.407G>C | p.Arg136Pro | missense variant | moderate | contig869 | 622163 | C/G |
|
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 | c.757C>T | p.Pro253Ser | missense variant | moderate | contig97 | 242463 | C/T | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 | c.1435G>C | p.Ala479Pro | missense variant | moderate | contig97 | 244266 | G/C |
|
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 | c.2128C>G | p.His710Asp | missense variant | moderate | contig97 | 244959 | C/G |
|
ELF3 | c.2140C>T | p.Pro714Ser | missense variant | moderate | contig97 | 244971 | C/T | |
ELF3 | c.2141C>G | p.Pro714Arg | missense variant | moderate | contig97 | 244972 | C/G | |
ELF3 | c.2198G>T | p.Arg733Leu | missense variant | moderate | contig97 | 245029 | G/T | |
ELF5 | c.520A>G | p.Thr174Ala | missense variant | moderate | contig382 | 880382 | A/G | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 |
c.948_949ins |
p.Asp317fs | frameshift variant | high | contig81 | 209910 | C/CA |
|
AAE1-2 | c.952delC | p.Gln318fs | frameshift variant | high | contig81 | 209912 | AC/A |
|
AAE1-2 | c.953A>G | p.Gln318Arg | missense variant | moderate | contig81 | 209915 | A/G |
|
AAE1-2 | c.955C>T | p.Arg319Cys | missense variant | moderate | contig81 | 209917 | C/T |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
|
AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
|
AAE1-2 | c.1434G>T | p.Glu478Asp | missense variant | moderate | contig81 | 210396 | G/T |
|
AAE1-2 | c.1541T>C | p.Val514Ala | missense variant | moderate | contig81 | 210503 | T/C |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.560C>T | p.Thr187Met | missense variant | moderate | contig700 | 1951078 | G/A |
|
PKSG-2b | c.558G>A | p.Met186Ile | missense variant | moderate | contig700 | 1951080 | C/T |
|
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
PIE1-2 | c.6653A>G | p.Asn2218Ser | missense variant | moderate | contig1460 | 1184434 | T/C | |
PIE1-2 | c.1846A>G | p.Lys616Glu | missense variant | moderate | contig1460 | 1190278 | T/C |
|
PIE1-2 | c.1630G>C | p.Ala544Pro | missense variant | moderate | contig1460 | 1191600 | C/G | |
PIE1-2 | c.1156T>G | p.Trp386Gly | missense variant | moderate | contig1460 | 1192242 | A/C | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
FT | c.175C>G | p.Leu59Val | missense variant | moderate | contig1561 | 3124599 | C/G |
|
FT | c.194A>T | p.His65Leu | missense variant | moderate | contig1561 | 3124618 | A/T |
|
FT | c.196A>G | p.Ile66Val | missense variant | moderate | contig1561 | 3124620 | A/G | |
FT |
c.371_372ins |
p.Arg124_Phe |
disruptive inframe insertion | moderate | contig1561 | 3126408 | G/GGTTTGT |
|
aPT4 | c.198A>C | p.Lys66Asn | missense variant | moderate | contig121 | 2828854 | A/C |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT4 | c.757G>T | p.Val253Leu | missense variant | moderate | contig121 | 2831364 | G/T |
|
aPT4 | c.916C>T | p.His306Tyr | missense variant & splice region variant | moderate | contig121 | 2832711 | C/T |
|
aPT4 | c.920G>A | p.Gly307Asp | missense variant | moderate | contig121 | 2832715 | G/A |
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
FLD | c.2869C>T | p.His957Tyr | missense variant | moderate | contig1450 | 2044163 | G/A |
|
FLD | c.2831A>G | p.Glu944Gly | missense variant | moderate | contig1450 | 2044201 | T/C |
|
AAE1-3 | c.655C>T | p.Pro219Ser | missense variant | moderate | contig976 | 1083199 | G/A |
|
AAE1-3 | c.635G>A | p.Gly212Asp | missense variant | moderate | contig976 | 1083219 | C/T |
|
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
AAE1-3 | c.610delG | p.Glu204fs | frameshift variant | high | contig976 | 1083243 | TC/T |
|
AAE1-3 |
c.600_608del |
p.Ser201_Asp |
disruptive inframe deletion | moderate | contig976 | 1083245 | ATCACCACTG/A |
|
AAE1-3 | c.416T>C | p.Leu139Pro | missense variant | moderate | contig976 | 1083609 | A/G |
|
AAE1-3 | c.403G>T | p.Asp135Tyr | missense variant | moderate | contig976 | 1083622 | C/A |
|
AAE1-3 | c.382T>C | p.Tyr128His | missense variant | moderate | contig976 | 1083643 | A/G |
|
AAE1-3 | c.233C>G | p.Ser78Cys | missense variant | moderate | contig976 | 1083842 | G/C |
|
AAE1-3 | c.224C>T | p.Pro75Leu | missense variant | moderate | contig976 | 1083851 | G/A |
|
AAE1-3 | c.212C>G | p.Thr71Arg | missense variant | moderate | contig976 | 1083863 | G/C |
|
AAE1-3 | c.208G>C | p.Ala70Pro | missense variant | moderate | contig976 | 1083867 | C/G |
|
AAE1-3 | c.167A>G | p.Glu56Gly | missense variant | moderate | contig976 | 1083908 | T/C |
|
AAE1-3 | c.154G>A | p.Val52Ile | missense variant | moderate | contig976 | 1083921 | C/T |
|
AAE1-3 | c.101A>G | p.Tyr34Cys | missense variant | moderate | contig976 | 1083974 | T/C |
|
PKSB-3 | c.509T>C | p.Val170Ala | missense variant & splice region variant | moderate | contig93 | 3336743 | T/C |
|
PKSB-3 | c.1490C>T | p.Ala497Val | missense variant | moderate | contig93 | 3339597 | C/T |
|
PKSB-3 | c.1848G>A | p.Met616Ile | missense variant | moderate | contig93 | 3339955 | G/A |
|
Nearest genetic relatives (All Samples)
- 0.188 Futura 75 (RSP10664)
- 0.205 VIR 469 (SRR14708242)
- 0.210 R1in136 (SRR14708237)
- 0.213 USO 31 (RSP10983)
- 0.215 Tygra (RSP10667)
- 0.216 R1in136 (SRR14708225)
- 0.217 Carmagnola (RSP10982)
- 0.219 Miss X (RSP10999)
- 0.222 Tisza (RSP10659)
- 0.226 Fedora 17 (SRR14708222)
- 0.232 Tisza (RSP11045)
- 0.232 KYRG-11 (RSP11051)
- 0.233 Lovrin (RSP10658)
- 0.233 VIR 449, Szegedi 9 (SRR14708213)
- 0.235 VIR 223, Bernburgskaya Odnodomnaya, bm (SRR14708217)
- 0.237 B52 (SRR14708255)
- 0.239 USO 31 (RSP10981)
- 0.239 Bialobrzeskie (SRR14708244)
- 0.239 JL Cross 26 (RSP11527)
- 0.240 JL X NSPM1 14 (RSP11473)
Nearest genetic relatives (Base Tree)
- 0.199 Futura 75 (RSP10664)
- 0.231 Tygra (RSP10667)
- 0.232 KYRG-11 (RSP11051)
- 0.242 Tisza (RSP10659)
- 0.248 Lovrin (RSP10658)
- 0.253 USO 31 (RSP10981)
- 0.263 Liberty Haze (RSP11000)
- 0.268 Jiangji (RSP10653)
- 0.270 Santhica27 (RSP11047)
- 0.276 Fedora 17 (RSP10661)
- 0.276 Kyrgyz Gold (RSP11054)
- 0.276 Carmagnola (RSP11037)
- 0.277 Tisza (RSP11044)
- 0.296 Monoica (RSP10241)
- 0.296 Black Beauty (RSP11035)
- 0.296 Ivory (RSP10668)
- 0.297 Feral (RSP10890)
- 0.297 Recon (RSP10755)
- 0.299 Kimbo Slice (RSP10997)
- 0.300 RKM-2018-009 (RSP11100)
Most genetically distant strains (All Samples)
- 0.464 JL yellow (RSP11075)
- 0.447 JL 3rd Gen Mother (RSP11197)
- 0.438 JL 4th Gen 6 (RSP11200)
- 0.431 JL 3rd Gen Mother (RSP11214)
- 0.429 JL 4th Gen 5 (RSP11199)
- 0.428 Cbot-2019-005 (RSP11133)
- 0.425 Red Eye OG (RSP11190)
- 0.422 JL 4th Gen 1 (RSP11193)
- 0.419 JL 3rd Gen Father (RSP11196)
- 0.419 Cbot-2019-003 (RSP11131)
- 0.419 JL 4th Gen 4 (RSP11198)
- 0.418 80E (RSP11213)
- 0.417 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.414 UP Sunset (RSP11256)
- 0.409 Grape Stomper (RSP11180)
- 0.408 Tanao Sri-white 80 (RSP11621)
- 0.400 RKM-2018-002 (RSP11093)
- 0.399 Northern Lights (RSP11501)
- 0.396 Skywalker OG (RSP10837)
- 0.396 Blueberry Cheesecake (RSP10680)
Most genetically distant strains (Base Tree)
- 0.425 JL yellow (RSP11075)
- 0.422 Cbot-2019-005 (RSP11133)
- 0.421 RKM-2018-026 (RSP11118)
- 0.414 RKM-2018-002 (RSP11093)
- 0.404 Blueberry Cheesecake (RSP10680)
- 0.402 Durban Poison (RSP11014)
- 0.385 Skywalker OG (RSP10837)
- 0.380 Cbot-2019-004 (RSP11132)
- 0.371 Pie Hoe (RSP11073)
- 0.370 Kush Hemp E1 (RSP11128)
- 0.369 RKM-2018-019 (RSP11111)
- 0.356 Gold Cracker (RSP11048)
- 0.355 Hermaphrodite ResearchSample2 (RSP11050)
- 0.354 RKM-2018-032 (RSP11124)
- 0.353 RKM-2018-006 (RSP11097)
- 0.352 The Gift (RSP10988)
- 0.351 Blueberry Cheesecake (RSP10672)
- 0.349 Skunk 18 (RSP11038)
- 0.345 RKM-2018-034 (RSP11126)
- 0.343 Blueberry Cheesecake (RSP10684)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 13
- Concordance:
- 8
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 2
- Concordance:
- 2