VIR 493 - Glukhovskaja 10 Zheltostebel'naja
SRR 14708230
General Information
- Sample Name
- UGA
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
GPPs1 | c.896A>G | p.Asn299Ser | missense variant | moderate | contig676 | 169772 | A/G |
|
EMF1-2 | c.1148C>T | p.Ala383Val | missense variant | moderate | contig885 | 2034 | C/T |
|
EMF1-2 | c.1187T>C | p.Leu396Ser | missense variant | moderate | contig885 | 2073 | T/C |
|
EMF1-2 | c.1189G>A | p.Ala397Thr | missense variant | moderate | contig885 | 2075 | G/A |
|
EMF1-2 | c.1828A>G | p.Ile610Val | missense variant | moderate | contig885 | 2714 | A/G |
|
EMF1-2 | c.2008C>T | p.Pro670Ser | missense variant | moderate | contig885 | 2894 | C/T |
|
PHL-2 | c.44G>A | p.Arg15Lys | missense variant | moderate | contig2621 | 337613 | G/A | |
PHL-2 | c.932T>C | p.Leu311Pro | missense variant | moderate | contig2621 | 340210 | T/C | |
PHL-2 | c.2564T>A | p.Phe855Tyr | missense variant | moderate | contig2621 | 342607 | T/A | |
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PKSG-4b | c.558-1G>A | splice acceptor variant & intron variant | high | contig700 | 2715037 | C/T |
|
|
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
PKSG-4b | c.229G>A | p.Gly77Ser | missense variant | moderate | contig700 | 2724206 | C/T |
|
AAE1-1 | c.454A>G | p.Lys152Glu | missense variant | moderate | contig606 | 3243817 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
FAD2-2 | c.75C>A | p.His25Gln | missense variant | moderate | contig83 | 1803294 | G/T |
|
aPT1 | c.160A>C | p.Thr54Pro | missense variant | moderate | contig121 | 2835867 | A/C | |
aPT1 | c.670T>A | p.Ser224Thr | missense variant | moderate | contig121 | 2840278 | T/A |
|
aPT1 | c.864C>G | p.Asn288Lys | missense variant | moderate | contig121 | 2842407 | C/G | |
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 | c.1541T>C | p.Val514Ala | missense variant | moderate | contig81 | 210503 | T/C |
|
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 |
c.-108+1_-10 |
splice donor variant & intron variant | high | contig1891 | 889975 | A/AC |
|
|
PIE1-2 | c.982G>A | p.Glu328Lys | missense variant | moderate | contig1460 | 1192416 | C/T | |
PIE1-2 | c.710C>T | p.Pro237Leu | missense variant | moderate | contig1460 | 1193804 | G/A | |
EMF2 | c.1183G>A | p.Glu395Lys | missense variant | moderate | contig954 | 3054195 | G/A |
|
EMF2 | c.1205C>T | p.Ala402Val | missense variant & splice region variant | moderate | contig954 | 3055694 | C/T | |
EMF2 | c.1742C>G | p.Thr581Ser | missense variant | moderate | contig954 | 3059899 | C/G |
|
EMF1-1 | c.62C>G | p.Thr21Ser | missense variant | moderate | contig883 | 268910 | C/G |
|
EMF1-1 | c.389G>A | p.Arg130Gln | missense variant | moderate | contig883 | 269878 | G/A |
|
FT | c.194A>T | p.His65Leu | missense variant | moderate | contig1561 | 3124618 | A/T |
|
FT | c.196A>G | p.Ile66Val | missense variant | moderate | contig1561 | 3124620 | A/G | |
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 | c.198A>C | p.Lys66Asn | missense variant | moderate | contig121 | 2828854 | A/C |
|
aPT4 | c.202T>A | p.Leu68Ile | missense variant | moderate | contig121 | 2828858 | T/A |
|
AAE1-3 | c.635G>A | p.Gly212Asp | missense variant | moderate | contig976 | 1083219 | C/T |
|
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
AAE1-3 | c.224C>T | p.Pro75Leu | missense variant | moderate | contig976 | 1083851 | G/A |
|
AAE1-3 | c.208G>C | p.Ala70Pro | missense variant | moderate | contig976 | 1083867 | C/G |
|
AAE1-3 | c.181G>A | p.Val61Ile | missense variant | moderate | contig976 | 1083894 | C/T |
|
AAE1-3 | c.167A>G | p.Glu56Gly | missense variant | moderate | contig976 | 1083908 | T/C |
|
PKSB-3 | c.1652A>G | p.Glu551Gly | missense variant | moderate | contig93 | 3339759 | A/G |
|
Nearest genetic relatives (All Samples)
- 0.118 R1in136 (SRR14708237)
- 0.122 AOAC MI 535 (RSP11754)
- 0.129 Lifter (RSP11365)
- 0.130 AOAC MI 545 (RSP11756)
- 0.133 AOAC MI 548 (RSP11757)
- 0.136 AOAC MI 508 (RSP11750)
- 0.136 AOAC MI 532 (RSP11752)
- 0.138 AOAC MI 597 (RSP11761)
- 0.138 AOAC MI 533 (RSP11753)
- 0.140 AOAC MI 501 (RSP11748)
- 0.140 AOAC MI 569 (RSP11759)
- 0.141 Electra (RSP11366)
- 0.141 AOAC MI 504 (RSP11749)
- 0.142 AOAC MI 588 (RSP11760)
- 0.145 Kompolti (SRR14708277)
- 0.146 AOAC MI 542 (RSP11755)
- 0.148 AOAC MI 599 (RSP11762)
- 0.149 AOAC MI 567 (RSP11758)
- 0.150 Serious Happiness (RSP10763)
- 0.151 B52 (SRR14708255)
Nearest genetic relatives (Base Tree)
- 0.199 Lovrin (RSP10658)
- 0.213 Tisza (RSP10659)
- 0.223 Kyrgyz Gold (RSP11054)
- 0.226 Liberty Haze (RSP11000)
- 0.233 Recon (RSP10755)
- 0.241 USO 31 (RSP10981)
- 0.241 Carmagnola (RSP11037)
- 0.242 Carmagnola (RSP10979)
- 0.242 Tisza (RSP11044)
- 0.243 Santhica27 (RSP11047)
- 0.244 UP Sunrise (RSP10989)
- 0.245 Blueberry Cheesecake (RSP10684)
- 0.250 Futura 75 (RSP10664)
- 0.254 Tygra (RSP10667)
- 0.254 Feral (RSP10890)
- 0.265 RKM-2018-029 (RSP11121)
- 0.266 RKM-2018-009 (RSP11100)
- 0.267 Fedora 17 (RSP10661)
- 0.270 Golden Goat 2 (RSP10991)
- 0.274 RKM-2018-023 (RSP11115)
Most genetically distant strains (All Samples)
- 0.414 Northern Lights (RSP11501)
- 0.409 JL yellow (RSP11075)
- 0.404 80E (RSP11213)
- 0.404 Danny Noonan (RSP11070)
- 0.402 Squirrel Tail 81 (RSP11622)
- 0.402 Tanao Sri-white 80 (RSP11621)
- 0.401 JL 3rd Gen Mother (RSP11214)
- 0.388 Tanao Sri 46 (RSP11486)
- 0.387 JL 2 (RSP11076)
- 0.381 Cherry Blossom (RSP11323)
- 0.379 Tanao Sri-white-T1 (RSP11658)
- 0.378 Tanao Sri-white 79 (RSP11620)
- 0.376 Feral (RSP11205)
- 0.375 JL 3rd Gen Mother (RSP11197)
- 0.374 JL 4th Gen 5 (RSP11199)
- 0.371 Tiger Tail 78 (RSP11619)
- 0.371 UP Sunset (RSP11256)
- 0.359 Tiger Tail 30 (RSP11484)
- 0.355 IUP3 (SRR14708256)
- 0.351 Squirrel Tail 31 (RSP11485)
Most genetically distant strains (Base Tree)
- 0.406 JL yellow (RSP11075)
- 0.355 Kush Hemp E1 (RSP11128)
- 0.350 Cbot-2019-005 (RSP11133)
- 0.347 RKM-2018-002 (RSP11093)
- 0.337 Blueberry Cheesecake (RSP10672)
- 0.337 Cbot-2019-004 (RSP11132)
- 0.329 RKM-2018-022 (RSP11114)
- 0.326 Ivory (RSP10668)
- 0.324 RKM-2018-006 (RSP11097)
- 0.322 Blue Dream (RSP11033)
- 0.320 Kimbo Slice (RSP10997)
- 0.319 Sour Raspberry (RSP10551)
- 0.318 Durban Poison (RSP11014)
- 0.317 Jiangji (RSP10653)
- 0.317 RKM-2018-003 (RSP11094)
- 0.315 RKM-2018-034 (RSP11126)
- 0.315 Skywalker OG (RSP10837)
- 0.315 RKM-2018-027 (RSP11119)
- 0.314 RKM-2018-031 (RSP11123)
- 0.309 RKM-2018-026 (RSP11118)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 12
- Concordance:
- 9
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 3
- Concordance:
- 3