VIR 201
SRR 14708232
General Information
- Sample Name
- UKE
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
GPPs1 | c.744C>G | p.Asp248Glu | missense variant | moderate | contig676 | 168993 | C/G |
|
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
GPPs1 | c.896A>G | p.Asn299Ser | missense variant | moderate | contig676 | 169772 | A/G |
|
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PHL-2 | c.3379C>G | p.His1127Asp | missense variant | moderate | contig2621 | 343422 | C/G |
|
PHL-2 | c.3380A>G | p.His1127Arg | missense variant | moderate | contig2621 | 343423 | A/G |
|
PHL-2 | c.3381T>A | p.His1127Gln | missense variant | moderate | contig2621 | 343424 | T/A |
|
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
PKSG-2a | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1944273 | T/C | |
PKSG-2a | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1944442 | A/C |
|
PKSG-2a | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1944445 | A/C |
|
PKSG-2a | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1944446 | C/T |
|
PKSG-2a | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1944456 | G/C |
|
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 | c.1571C>T | p.Pro524Leu | missense variant | moderate | contig97 | 244402 | C/T |
|
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 | c.2128C>G | p.His710Asp | missense variant | moderate | contig97 | 244959 | C/G |
|
ELF3 | c.2140C>T | p.Pro714Ser | missense variant | moderate | contig97 | 244971 | C/T | |
ELF3 | c.2141C>G | p.Pro714Arg | missense variant | moderate | contig97 | 244972 | C/G | |
aPT1 |
c.95_97delGT |
p.Cys32del | disruptive inframe deletion | moderate | contig121 | 2835800 | ATGT/A | |
aPT1 | c.160A>C | p.Thr54Pro | missense variant | moderate | contig121 | 2835867 | A/C | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.670T>A | p.Ser224Thr | missense variant | moderate | contig121 | 2840278 | T/A |
|
aPT1 | c.727G>T | p.Glu243* | stop gained | high | contig121 | 2841362 | G/T | |
aPT1 | c.864C>G | p.Asn288Lys | missense variant | moderate | contig121 | 2842407 | C/G | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 |
c.948_949ins |
p.Asp317fs | frameshift variant | high | contig81 | 209910 | C/CA |
|
AAE1-2 | c.952delC | p.Gln318fs | frameshift variant | high | contig81 | 209912 | AC/A |
|
AAE1-2 | c.953A>G | p.Gln318Arg | missense variant | moderate | contig81 | 209915 | A/G |
|
AAE1-2 | c.955C>T | p.Arg319Cys | missense variant | moderate | contig81 | 209917 | C/T |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
Edestin | c.231G>T | p.Glu77Asp | missense variant | moderate | contig850 | 3065059 | C/A |
|
Edestin | c.203G>A | p.Gly68Glu | missense variant | moderate | contig850 | 3065087 | C/T |
|
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
EMF2 |
c.1415_1416i |
p.His474fs | frameshift variant | high | contig954 | 3056602 | A/ATT |
|
EMF2 |
c.1418_1419i |
p.Ser473_His |
disruptive inframe insertion | moderate | contig954 | 3056605 | C/CACA | |
EMF2 |
c.1419_1420i |
p.His474fs | frameshift variant | high | contig954 | 3056606 | G/GT |
|
FT | c.240C>G | p.Asn80Lys | missense variant | moderate | contig1561 | 3124664 | C/G |
|
aPT4 | c.80A>G | p.Lys27Arg | missense variant | moderate | contig121 | 2828736 | A/G |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 | c.202T>A | p.Leu68Ile | missense variant | moderate | contig121 | 2828858 | T/A |
|
aPT4 | c.757G>T | p.Val253Leu | missense variant | moderate | contig121 | 2831364 | G/T |
|
aPT4 | c.916C>T | p.His306Tyr | missense variant & splice region variant | moderate | contig121 | 2832711 | C/T |
|
FLD | c.2869C>T | p.His957Tyr | missense variant | moderate | contig1450 | 2044163 | G/A |
|
FLD | c.2831A>G | p.Glu944Gly | missense variant | moderate | contig1450 | 2044201 | T/C |
|
AAE1-3 | c.667G>A | p.Val223Ile | missense variant | moderate | contig976 | 1083187 | C/T |
|
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
AAE1-3 | c.296C>T | p.Pro99Leu | missense variant | moderate | contig976 | 1083729 | G/A |
|
AAE1-3 | c.293A>G | p.Asp98Gly | missense variant | moderate | contig976 | 1083732 | T/C |
|
AAE1-3 | c.284A>T | p.Glu95Val | missense variant | moderate | contig976 | 1083741 | T/A |
|
AAE1-3 | c.181G>A | p.Val61Ile | missense variant | moderate | contig976 | 1083894 | C/T |
|
AAE1-3 | c.167A>G | p.Glu56Gly | missense variant | moderate | contig976 | 1083908 | T/C |
|
AAE1-3 | c.141A>G | p.Ile47Met | missense variant | moderate | contig976 | 1083934 | T/C |
|
AAE1-3 | c.125A>G | p.Glu42Gly | missense variant | moderate | contig976 | 1083950 | T/C |
|
GGR | c.317C>T | p.Pro106Leu | missense variant | moderate | contig2282 | 549309 | C/T | |
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
GGR | c.541G>A | p.Val181Ile | missense variant | moderate | contig2282 | 549533 | G/A |
|
GGR | c.581C>T | p.Ala194Val | missense variant | moderate | contig2282 | 549573 | C/T | |
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
GGR | c.810A>C | p.Glu270Asp | missense variant | moderate | contig2282 | 549802 | A/C |
|
Nearest genetic relatives (All Samples)
- 0.156 B52 (SRR14708255)
- 0.167 Electra (RSP11366)
- 0.167 Lift (RSP11378)
- 0.170 Joy (RSP11380)
- 0.176 Trump x Trump (RSP11466)
- 0.181 R1in136 (SRR14708237)
- 0.185 AOAC MI 567 (RSP11758)
- 0.186 AOAC MI 504 (RSP11749)
- 0.188 AOAC MI 542 (RSP11755)
- 0.189 AOAC MI 508 (RSP11750)
- 0.189 AOAC MI 599 (RSP11762)
- 0.190 Kompolti (SRR14708277)
- 0.191 AOAC MI 548 (RSP11757)
- 0.192 VIR 483 (SRR14708239)
- 0.193 AOAC MI 501 (RSP11748)
- 0.193 VIR 469 (SRR14708242)
- 0.194 AOAC MI 533 (RSP11753)
- 0.194 AOAC MI 535 (RSP11754)
- 0.194 Alpine Rocket (SRR14708266)
- 0.195 Durban Poison 1 (RSP11013)
Nearest genetic relatives (Base Tree)
- 0.205 Tygra (RSP10667)
- 0.213 Liberty Haze (RSP11000)
- 0.214 Tisza (RSP10659)
- 0.214 UP Sunrise (RSP10989)
- 0.232 Tisza (RSP11044)
- 0.240 Carmagnola (RSP11037)
- 0.245 Lovrin (RSP10658)
- 0.246 Carmagnola (RSP10979)
- 0.250 Futura 75 (RSP10664)
- 0.250 Kyrgyz Gold (RSP11054)
- 0.258 Italian Kiss (RSP11034)
- 0.259 Blueberry Cheesecake (RSP10684)
- 0.264 Santhica27 (RSP11047)
- 0.266 RKM-2018-019 (RSP11111)
- 0.270 Golden Goat 2 (RSP10991)
- 0.270 Feral (RSP10890)
- 0.278 RKM-2018-020 (RSP11112)
- 0.278 Hermaphrodite Research Sample1 (RSP11049)
- 0.284 Recon (RSP10755)
- 0.286 RKM-2018-005 (RSP11096)
Most genetically distant strains (All Samples)
- 0.438 JL 3rd Gen Mother (RSP11197)
- 0.424 JL yellow (RSP11075)
- 0.422 JL 3rd Gen Mother (RSP11214)
- 0.409 Tanao Sri-white 80 (RSP11621)
- 0.392 Red Eye OG (RSP11190)
- 0.390 JL 2 (RSP11076)
- 0.390 Unknown- Cherry Wine - 001 (RSP11268)
- 0.390 Tanao Sri 46 (RSP11486)
- 0.387 Chem 91 (RSP11185)
- 0.380 Danny Noonan (RSP11070)
- 0.379 JL 4th Gen 6 (RSP11200)
- 0.375 Cherry Blossom (RSP11323)
- 0.372 Tanao Sri-white-T1 (RSP11658)
- 0.372 Tanao Sri-white 79 (RSP11620)
- 0.371 JL 4th Gen 5 (RSP11199)
- 0.370 Squirrel Tail 81 (RSP11622)
- 0.367 JL 4th Gen 1 (RSP11193)
- 0.367 80E (RSP11213)
- 0.364 JL 4th Gen 4 (RSP11198)
- 0.364 Skywalker OG (RSP10837)
Most genetically distant strains (Base Tree)
- 0.429 JL yellow (RSP11075)
- 0.371 RKM-2018-034 (RSP11126)
- 0.368 Skywalker OG (RSP10837)
- 0.363 RKM-2018-002 (RSP11093)
- 0.361 Blueberry Cheesecake (RSP10672)
- 0.349 Sour Raspberry (RSP10551)
- 0.346 Cbot-2019-004 (RSP11132)
- 0.341 Cbot-2019-005 (RSP11133)
- 0.341 The Gift (RSP10988)
- 0.339 RKM-2018-031 (RSP11123)
- 0.336 Cherry (RSP11143)
- 0.335 RKM-2018-026 (RSP11118)
- 0.335 Kush Hemp E1 (RSP11128)
- 0.332 RKM-2018-006 (RSP11097)
- 0.331 Cbot-2019-006 (RSP11134)
- 0.326 RKM-2018-023 (RSP11115)
- 0.326 Cbot-2019-001 (RSP11129)
- 0.325 RKM-2018-032 (RSP11124)
- 0.324 Blueberry Cheesecake (RSP10680)
- 0.324 Jiangji (RSP10653)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 12
- Concordance:
- 9
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 3
- Concordance:
- 3