VIR 201
SRR 14708232
General Information
- Sample Name
- UKE
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
GPPs1 | c.744C>G | p.Asp248Glu | missense variant | moderate | contig676 | 168993 | C/G |
|
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
GPPs1 | c.896A>G | p.Asn299Ser | missense variant | moderate | contig676 | 169772 | A/G |
|
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
PHL-2 | c.2578T>A | p.Leu860Ile | missense variant | moderate | contig2621 | 342621 | T/A | |
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PHL-2 | c.3379C>G | p.His1127Asp | missense variant | moderate | contig2621 | 343422 | C/G |
|
PHL-2 | c.3380A>G | p.His1127Arg | missense variant | moderate | contig2621 | 343423 | A/G |
|
PHL-2 | c.3381T>A | p.His1127Gln | missense variant | moderate | contig2621 | 343424 | T/A |
|
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
PKSG-2a | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1944273 | T/C | |
PKSG-2a | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1944442 | A/C |
|
PKSG-2a | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1944445 | A/C |
|
PKSG-2a | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1944446 | C/T |
|
PKSG-2a | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1944456 | G/C |
|
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 | c.1571C>T | p.Pro524Leu | missense variant | moderate | contig97 | 244402 | C/T |
|
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 | c.2128C>G | p.His710Asp | missense variant | moderate | contig97 | 244959 | C/G |
|
ELF3 | c.2140C>T | p.Pro714Ser | missense variant | moderate | contig97 | 244971 | C/T | |
ELF3 | c.2141C>G | p.Pro714Arg | missense variant | moderate | contig97 | 244972 | C/G | |
aPT1 |
c.95_97delGT |
p.Cys32del | disruptive inframe deletion | moderate | contig121 | 2835800 | ATGT/A | |
aPT1 | c.160A>C | p.Thr54Pro | missense variant | moderate | contig121 | 2835867 | A/C | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.670T>A | p.Ser224Thr | missense variant | moderate | contig121 | 2840278 | T/A |
|
aPT1 | c.727G>T | p.Glu243* | stop gained | high | contig121 | 2841362 | G/T | |
aPT1 | c.864C>G | p.Asn288Lys | missense variant | moderate | contig121 | 2842407 | C/G | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 |
c.948_949ins |
p.Asp317fs | frameshift variant | high | contig81 | 209910 | C/CA |
|
AAE1-2 | c.952delC | p.Gln318fs | frameshift variant | high | contig81 | 209912 | AC/A |
|
AAE1-2 | c.953A>G | p.Gln318Arg | missense variant | moderate | contig81 | 209915 | A/G |
|
AAE1-2 | c.955C>T | p.Arg319Cys | missense variant | moderate | contig81 | 209917 | C/T |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
Edestin | c.231G>T | p.Glu77Asp | missense variant | moderate | contig850 | 3065059 | C/A |
|
Edestin | c.203G>A | p.Gly68Glu | missense variant | moderate | contig850 | 3065087 | C/T |
|
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
EMF2 |
c.1415_1416i |
p.His474fs | frameshift variant | high | contig954 | 3056602 | A/ATT |
|
EMF2 |
c.1418_1419i |
p.Ser473_His |
disruptive inframe insertion | moderate | contig954 | 3056605 | C/CACA | |
EMF2 |
c.1419_1420i |
p.His474fs | frameshift variant | high | contig954 | 3056606 | G/GT |
|
FT | c.240C>G | p.Asn80Lys | missense variant | moderate | contig1561 | 3124664 | C/G |
|
aPT4 | c.80A>G | p.Lys27Arg | missense variant | moderate | contig121 | 2828736 | A/G |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 | c.202T>A | p.Leu68Ile | missense variant | moderate | contig121 | 2828858 | T/A |
|
aPT4 | c.757G>T | p.Val253Leu | missense variant | moderate | contig121 | 2831364 | G/T |
|
aPT4 | c.916C>T | p.His306Tyr | missense variant & splice region variant | moderate | contig121 | 2832711 | C/T |
|
FLD | c.2869C>T | p.His957Tyr | missense variant | moderate | contig1450 | 2044163 | G/A |
|
FLD | c.2831A>G | p.Glu944Gly | missense variant | moderate | contig1450 | 2044201 | T/C |
|
AAE1-3 | c.667G>A | p.Val223Ile | missense variant | moderate | contig976 | 1083187 | C/T |
|
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
AAE1-3 | c.296C>T | p.Pro99Leu | missense variant | moderate | contig976 | 1083729 | G/A |
|
AAE1-3 | c.293A>G | p.Asp98Gly | missense variant | moderate | contig976 | 1083732 | T/C |
|
AAE1-3 | c.284A>T | p.Glu95Val | missense variant | moderate | contig976 | 1083741 | T/A |
|
AAE1-3 | c.181G>A | p.Val61Ile | missense variant | moderate | contig976 | 1083894 | C/T |
|
AAE1-3 | c.167A>G | p.Glu56Gly | missense variant | moderate | contig976 | 1083908 | T/C |
|
AAE1-3 | c.141A>G | p.Ile47Met | missense variant | moderate | contig976 | 1083934 | T/C |
|
AAE1-3 | c.125A>G | p.Glu42Gly | missense variant | moderate | contig976 | 1083950 | T/C |
|
GGR | c.317C>T | p.Pro106Leu | missense variant | moderate | contig2282 | 549309 | C/T | |
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
GGR | c.541G>A | p.Val181Ile | missense variant | moderate | contig2282 | 549533 | G/A |
|
GGR | c.581C>T | p.Ala194Val | missense variant | moderate | contig2282 | 549573 | C/T | |
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
GGR | c.810A>C | p.Glu270Asp | missense variant | moderate | contig2282 | 549802 | A/C |
|
Nearest genetic relatives (All Samples)
- 0.212 Santhica27 (RSP10056)
- 0.217 Carmagnola (RSP10979)
- 0.219 Carmagnola (RSP10980)
- 0.220 VIR 469 (SRR14708243)
- 0.220 Carmagnola (RSP10978)
- 0.220 C-930 lot 211005 (RSP12603)
- 0.221 VIR 369 (SRR14708231)
- 0.221 Carmagnola (RSP10982)
- 0.223 VIR 37 - Novgorod-Seversky - cv (SRR14708234)
- 0.223 Carmagnola USO 31 (RSP11204)
- 0.224 Carmagnola (RSP11039)
- 0.224 Carmagnola (RSP10976)
- 0.225 Tisza (RSP10659)
- 0.225 VIR 469 (SRR14708242)
- 0.225 Carmagnola (RSP11037)
- 0.225 Santhica27 (RSP11046)
- 0.226 Santhica27 (RSP11047)
- 0.226 VIR 449 - Szegedi 9 (SRR14708213)
- 0.226 Tiborszallasie (RSP11210)
- 0.227 Carmagnola (RSP11202)
Nearest genetic relatives (Base Tree)
- 0.220 Carmagnola (RSP11037)
- 0.222 Carmagnola (RSP10979)
- 0.224 Tisza (RSP10659)
- 0.228 Tygra (RSP10667)
- 0.231 Lovrin (RSP10658)
- 0.235 Fedora 17 (RSP10661)
- 0.238 Tisza (RSP11044)
- 0.240 USO 31 (RSP10981)
- 0.241 Futura 75 (RSP10664)
- 0.242 Santhica27 (RSP11047)
- 0.250 Monoica (RSP10241)
- 0.252 KYRG-11 (RSP11051)
- 0.252 Ivory (RSP10668)
- 0.252 Feral (RSP10890)
- 0.258 Kyrgyz Gold (RSP11054)
- 0.298 Liberty Haze (RSP11000)
- 0.311 Jiangji (RSP10653)
- 0.315 Hermaphrodite ResearchSample2 (RSP11050)
- 0.320 Recon (RSP10755)
- 0.320 Kimbo Slice (RSP10997)
Most genetically distant strains (All Samples)
- 0.448 Cherry Blossom (RSP11318)
- 0.442 Cherry Blossom (RSP11323)
- 0.441 Cherry Blossom (RSP11301)
- 0.436 AVIDEKEL 2 0 (RSP11174)
- 0.431 Chematonic -Cannatonic x Chemdawg- (RSP11394)
- 0.427 Cherry Blossom (RSP11328)
- 0.422 Chem 91 (RSP11185)
- 0.422 Queen Dream (RSP11278)
- 0.422 QQD2 (RSP11450)
- 0.421 Medxotic (RSP11410)
- 0.419 Cherry Blossom (RSP11300)
- 0.419 Cherry Blossom (RSP11298)
- 0.418 New York City Deisel (RSP11225)
- 0.417 Queen Dream CBG (RSP11293)
- 0.416 Unknown--Cherry Wine---001- (RSP11268)
- 0.415 GMO x Garlic Breath (RSP12507)
- 0.415 GG4 (RSP11978)
- 0.413 Ringo s Gift -Katie s Cut- (RSP11624)
- 0.411 Cherry Blossom (RSP11312)
- 0.410 Wife (RSP11148)
Most genetically distant strains (Base Tree)
- 0.404 Cbot-2019-005 (RSP11133)
- 0.391 RKM-2018-028 (RSP11120)
- 0.387 RKM-2018-002 (RSP11093)
- 0.385 JL yellow (RSP11075)
- 0.385 Cbot-2019-001 (RSP11129)
- 0.381 RKM-2018-018 (RSP11110)
- 0.381 Skunk#18 (RSP11038)
- 0.379 Cherry (RSP11143)
- 0.374 Cherry (RSP11142)
- 0.371 RKM-2018-032 (RSP11124)
- 0.370 RKM-2018-004 (RSP11096)
- 0.370 Kush Hemp E1 (RSP11128)
- 0.367 RKM-2018-031 (RSP11123)
- 0.366 RKM-2018-022 (RSP11114)
- 0.366 RKM-2018-023 (RSP11115)
- 0.365 Blue Dream (RSP11033)
- 0.362 RKM-2018-006 (RSP11097)
- 0.361 Hermaphrodite Research Sample1 (RSP11049)
- 0.361 Skywalker OG (RSP10837)
- 0.361 RKM-2018-027 (RSP11119)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 12
- Concordance:
- 9
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 3
- Concordance:
- 3