Ferimon 12
SRR 14708233
General Information
- Sample Name
- FFN
- Accession Date
- May 31, 2021
- Reported Plant Sex
- not reported
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Unknown
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
GPPs1 | c.896A>G | p.Asn299Ser | missense variant | moderate | contig676 | 169772 | A/G |
|
EMF1-2 | c.2256A>T | p.Lys752Asn | missense variant | moderate | contig885 | 3142 | A/T |
|
PHL-2 | c.2756A>C | p.Glu919Ala | missense variant | moderate | contig2621 | 342799 | A/C | |
PHL-2 | c.2830A>G | p.Asn944Asp | missense variant | moderate | contig2621 | 342873 | A/G |
|
PHL-2 | c.3002A>G | p.Tyr1001Cys | missense variant | moderate | contig2621 | 343045 | A/G | |
PHL-2 | c.3027G>T | p.Lys1009Asn | missense variant | moderate | contig2621 | 343070 | G/T | |
PHL-2 | c.3033T>G | p.Cys1011Trp | missense variant | moderate | contig2621 | 343076 | T/G | |
PHL-2 | c.3467A>G | p.Gln1156Arg | missense variant | moderate | contig2621 | 343510 | A/G | |
PKSG-4b |
c.535_545del |
p.Ile179fs | frameshift variant | high | contig700 | 2721127 |
CCCCACTCCAAT |
|
PKSG-4b | c.523C>T | p.His175Tyr | missense variant | moderate | contig700 | 2721150 | G/A | |
PKSG-4b |
c.353_354ins |
p.Gly119fs | frameshift variant | high | contig700 | 2721319 | T/TGG |
|
PKSG-4b | c.324A>C | p.Glu108Asp | missense variant | moderate | contig700 | 2721349 | T/G |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
PKSG-4b | c.238T>C | p.Phe80Leu | missense variant | moderate | contig700 | 2724197 | A/G |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 | c.1366T>G | p.Leu456Val | missense variant | moderate | contig97 | 244197 | T/G |
|
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
ELF3 | c.2128C>G | p.His710Asp | missense variant | moderate | contig97 | 244959 | C/G |
|
ELF3 | c.2140C>T | p.Pro714Ser | missense variant | moderate | contig97 | 244971 | C/T | |
ELF3 | c.2141C>G | p.Pro714Arg | missense variant | moderate | contig97 | 244972 | C/G | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
HDS-2 | c.679G>C | p.Gly227Arg | missense variant | moderate | contig95 | 1990632 | G/C |
|
AAE1-2 |
c.285_290dup |
p.Ser96_Ser9 |
disruptive inframe insertion | moderate | contig81 | 209243 | A/AATCCTC |
|
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 | c.1415G>A | p.Ser472Asn | missense variant | moderate | contig81 | 210377 | G/A |
|
AAE1-2 | c.1417A>G | p.Thr473Ala | missense variant | moderate | contig81 | 210379 | A/G |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
Edestin | c.16T>C | p.Ser6Pro | missense variant | moderate | contig850 | 3065274 | A/G |
|
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
HDS-1 |
c.-108+1_-10 |
splice donor variant & intron variant | high | contig1891 | 889975 | A/AC |
|
|
PIE1-2 | c.6653A>G | p.Asn2218Ser | missense variant | moderate | contig1460 | 1184434 | T/C | |
PIE1-2 | c.1289A>G | p.Asp430Gly | missense variant | moderate | contig1460 | 1192109 | T/C |
|
EMF2 | c.722C>T | p.Thr241Ile | missense variant | moderate | contig954 | 3050302 | C/T | |
EMF2 | c.1205C>T | p.Ala402Val | missense variant & splice region variant | moderate | contig954 | 3055694 | C/T | |
EMF2 | c.1228A>G | p.Ser410Gly | missense variant | moderate | contig954 | 3055717 | A/G |
|
EMF2 | c.1315G>C | p.Ala439Pro | missense variant | moderate | contig954 | 3055804 | G/C | |
EMF2 | c.1772A>G | p.Gln591Arg | missense variant | moderate | contig954 | 3059929 | A/G | |
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
FLD | c.2686G>A | p.Ala896Thr | missense variant | moderate | contig1450 | 2044848 | C/T | |
FLD | c.2681T>C | p.Ile894Thr | missense variant | moderate | contig1450 | 2044853 | A/G | |
AAE1-3 | c.635G>A | p.Gly212Asp | missense variant | moderate | contig976 | 1083219 | C/T |
|
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
AAE1-3 | c.296C>T | p.Pro99Leu | missense variant | moderate | contig976 | 1083729 | G/A |
|
AAE1-3 | c.224C>T | p.Pro75Leu | missense variant | moderate | contig976 | 1083851 | G/A |
|
GGR | c.362A>T | p.Tyr121Phe | missense variant | moderate | contig2282 | 549354 | A/T |
|
GGR | c.581C>T | p.Ala194Val | missense variant | moderate | contig2282 | 549573 | C/T | |
GGR | c.810A>C | p.Glu270Asp | missense variant | moderate | contig2282 | 549802 | A/C |
|
PKSB-3 | c.1490C>T | p.Ala497Val | missense variant | moderate | contig93 | 3339597 | C/T |
|
PKSB-3 | c.1652A>G | p.Glu551Gly | missense variant | moderate | contig93 | 3339759 | A/G |
|
PKSB-3 | c.1848G>A | p.Met616Ile | missense variant | moderate | contig93 | 3339955 | G/A |
|
Nearest genetic relatives (All Samples)
- 0.167 Beniko (SRR14708275)
- 0.183 Durban Poison 1 (RSP11013)
- 0.183 Santhica27 (RSP11047)
- 0.189 Tygra (RSP10667)
- 0.199 Santhica 27 (RSP10665)
- 0.200 Santhica27 (RSP10056)
- 0.201 VIR 223, Bernburgskaya Odnodomnaya, bm (SRR14708217)
- 0.204 XUM2 (SRR14708204)
- 0.205 VIR 449, Szegedi 9 (SRR14708213)
- 0.205 Hermaphrodite ResearchSample2 (RSP11050)
- 0.206 Santhica 27 (SRR14708211)
- 0.207 Super Blue Dream (RSP11011)
- 0.208 KYRG-11 (RSP11051)
- 0.213 Blue Dream (RSP11004)
- 0.213 Kompolti (SRR14708277)
- 0.216 Santhica27 (RSP11046)
- 0.217 AOAC MI 542 (RSP11755)
- 0.218 Bialobrzeskie (SRR14708244)
- 0.218 AOAC MI 548 (RSP11757)
- 0.219 Durban Poison 1 (RSP10996)
Nearest genetic relatives (Base Tree)
- 0.205 Santhica27 (RSP11047)
- 0.235 Futura 75 (RSP10664)
- 0.237 Monoica (RSP10241)
- 0.237 KYRG-11 (RSP11051)
- 0.242 Tygra (RSP10667)
- 0.259 Hermaphrodite ResearchSample2 (RSP11050)
- 0.259 USO 31 (RSP10981)
- 0.266 Blueberry Cheesecake (RSP10684)
- 0.268 Lovrin (RSP10658)
- 0.272 Liberty Haze (RSP11000)
- 0.275 UP Sunrise (RSP10989)
- 0.275 Kyrgyz Gold (RSP11054)
- 0.292 Fedora 17 (RSP10661)
- 0.292 RKM-2018-005 (RSP11096)
- 0.296 Tisza (RSP10659)
- 0.299 Tisza (RSP11044)
- 0.302 Cherry (RSP11142)
- 0.303 Sour Raspberry (RSP10551)
- 0.307 Hermaphrodite Research Sample1 (RSP11049)
- 0.309 RKM-2018-020 (RSP11112)
Most genetically distant strains (All Samples)
- 0.452 80E (RSP11213)
- 0.417 Star Dawg (RSP11352)
- 0.415 Danny Noonan (RSP11070)
- 0.412 JL yellow (RSP11075)
- 0.406 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.400 80E (RSP11211)
- 0.398 Tanao Sri 46 (RSP11486)
- 0.395 Right Mark (RSP11628)
- 0.393 RKM-2018-001 (RSP11092)
- 0.391 IUP3 (SRR14708256)
- 0.391 JL 3rd Gen Mother (RSP11197)
- 0.390 80E (RSP11212)
- 0.386 501st OG (RSP11241)
- 0.386 JL Cross 13 (RSP11514)
- 0.384 Squirrel Tail 81 (RSP11622)
- 0.384 White Chronic (RSP11220)
- 0.384 Cherry Blossom (RSP11323)
- 0.383 JL 3rd Gen Mother (RSP11214)
- 0.381 Glueberry OG (RSP11222)
- 0.381 Northern Lights (RSP11501)
Most genetically distant strains (Base Tree)
- 0.432 JL yellow (RSP11075)
- 0.398 Cbot-2019-006 (RSP11134)
- 0.395 Cbot-2019-005 (RSP11133)
- 0.393 Skunk 18 (RSP11038)
- 0.375 RKM-2018-002 (RSP11093)
- 0.371 Gold Cracker (RSP11048)
- 0.370 RKM-2018-006 (RSP11097)
- 0.366 Carmagnola (RSP10979)
- 0.364 Cbot-2019-004 (RSP11132)
- 0.358 RKM-2018-027 (RSP11119)
- 0.357 Durban Poison (RSP11014)
- 0.356 Skywalker OG (RSP10837)
- 0.353 Pie Hoe (RSP11073)
- 0.350 RKM-2018-034 (RSP11126)
- 0.348 RKM-2018-018 (RSP11110)
- 0.348 Blue Dream (RSP11033)
- 0.348 Blueberry Cheesecake (RSP10680)
- 0.347 Italian Kiss (RSP11034)
- 0.346 QUEEN JESUS (RSP10105)
- 0.343 Golden Goat 2 (RSP10991)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 13
- Concordance:
- 10
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 5
- Concordance:
- 4